Topless-related protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 652 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3171 |
| Acc36I | ACCTGC | 3 cut(s) | 652, 743, 1448 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 662 |
| AccI | GTMKAC | 1 cut(s) | 1496 |
| AccII | CGCG | 2 cut(s) | 631, 2950 |
| AccIII | TCCGGA | 1 cut(s) | 173 |
| AciI | CCGC | 9 cut(s) | 514, 631, 1443, 1783, 1839, 1939, 2651, 2657, 3239 |
| AclI | AACGTT | 1 cut(s) | 2669 |
| AclWI | GGATC | 8 cut(s) | 609, 660, 673, 1162, 1203, 1235, 1248, 1627 |
| AcoI | YGGCCR | 1 cut(s) | 1836 |
| AcsI | RAATTY | 6 cut(s) | 59, 367, 502, 1862, 2016, 2869 |
| AcuI | CTGAAG | 6 cut(s) | 819, 966, 2094, 2259, 2553, 3339 |
| AcvI | CACGTG | 1 cut(s) | 3056 |
| AdeI | CACNNNGTG | 1 cut(s) | 701 |
| AfaI | GTAC | 9 cut(s) | 75, 167, 398, 887, 1120, 1684, 2820, 2955, 3222 |
| AflII | CTTAAG | 1 cut(s) | 440 |
| AflIII | ACRYGT | 2 cut(s) | 966, 2948 |
| AgeI | ACCGGT | 1 cut(s) | 198 |
| AhlI | ACTAGT | 2 cut(s) | 289, 1168 |
| AjiI | CACGTC | 1 cut(s) | 3298 |
| AjnI | CCWGG | 3 cut(s) | 416, 1243, 1642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 859, 891 |
| AleI | CACNNNNGTG | 2 cut(s) | 185, 609 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 11, 43 |
| Alw21I | GWGCWC | 3 cut(s) | 706, 826, 1658 |
| Alw26I | GTCTC | 4 cut(s) | 62, 502, 1964, 2990 |
| Alw44I | GTGCAC | 2 cut(s) | 702, 1654 |
| AlwI | GGATC | 8 cut(s) | 609, 660, 673, 1162, 1203, 1235, 1248, 1627 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1105, 1891, 2114, 2132, 2135, 2591 |
| Ama87I | CYCGRG | 1 cut(s) | 1623 |
| Aor13HI | TCCGGA | 1 cut(s) | 173 |
| AoxI | GGCC | 5 cut(s) | 710, 1755, 1836, 1915, 2800 |
| ApaLI | GTGCAC | 2 cut(s) | 702, 1654 |
| ApoI | RAATTY | 6 cut(s) | 59, 367, 502, 1862, 2016, 2869 |
| AseI | ATTAAT | 1 cut(s) | 3180 |
| AsiGI | ACCGGT | 1 cut(s) | 198 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1554, 2541, 2602 |
| AspLEI | GCGC | 1 cut(s) | 631 |
| AspS9I | GGNCC | 7 cut(s) | 270, 710, 1755, 1767, 2067, 2968, 3049 |
| AsuC2I | CCSGG | 1 cut(s) | 987 |
| AsuHPI | GGTGA | 6 cut(s) | 337, 633, 1355, 1730, 1856, 2460 |
| AsuNHI | GCTAGC | 1 cut(s) | 2444 |
| AvaI | CYCGRG | 1 cut(s) | 1623 |
| AvaII | GGWCC | 5 cut(s) | 270, 1767, 2067, 2968, 3049 |
| BaeGI | GKGCMC | 2 cut(s) | 706, 1658 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 224, 257, 1110, 1143 |
| BamHI | GGATCC | 2 cut(s) | 665, 1240 |
| BanII | GRGCYC | 2 cut(s) | 637, 3309 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3169, 3201 |
| BauI | CACGAG | 2 cut(s) | 607, 3230 |
| BbrPI | CACGTG | 1 cut(s) | 3056 |
| BbsI | GAAGAC | 1 cut(s) | 933 |
| Bbv12I | GWGCWC | 3 cut(s) | 706, 826, 1658 |
| BceAI | ACGGC | 1 cut(s) | 1742 |
| BciT130I | CCWGG | 3 cut(s) | 418, 1245, 1644 |
| BciVI | GTATCC | 1 cut(s) | 1946 |
| BclI | TGATCA | 1 cut(s) | 904 |
| BcnI | CCSGG | 1 cut(s) | 987 |
| BcoDI | GTCTC | 4 cut(s) | 62, 502, 1964, 2990 |
| BcuI | ACTAGT | 2 cut(s) | 289, 1168 |
| BfmI | CTRYAG | 5 cut(s) | 879, 1220, 2115, 2172, 3393 |
| BfrI | CTTAAG | 1 cut(s) | 440 |
| BfuAI | ACCTGC | 3 cut(s) | 652, 743, 1448 |
| BfuI | GTATCC | 1 cut(s) | 1946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2381 |
| BlpI | GCTNAGC | 1 cut(s) | 2853 |
| Bme1390I | CCNGG | 4 cut(s) | 418, 987, 1245, 1644 |
| Bme18I | GGWCC | 5 cut(s) | 270, 1767, 2067, 2968, 3049 |
| BmeT110I | CYCGRG | 1 cut(s) | 1623 |
| BmgBI | CACGTC | 1 cut(s) | 3298 |
| BmgT120I | GGNCC | 7 cut(s) | 270, 710, 1755, 1767, 2067, 2968, 3049 |
| BmiI | GGNNCC | 7 cut(s) | 636, 667, 1242, 1518, 1756, 3050, 3051 |
| BmrFI | CCNGG | 4 cut(s) | 418, 987, 1245, 1644 |
| BmrI | ACTGGG | 1 cut(s) | 728 |
| BmtI | GCTAGC | 1 cut(s) | 2448 |
| BmuI | ACTGGG | 1 cut(s) | 728 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2526 |
| BpiI | GAAGAC | 1 cut(s) | 933 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2423, 2455 |
| BpmI | CTGGAG | 1 cut(s) | 104 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2853 |
| BpuEI | CTTGAG | 5 cut(s) | 266, 1291, 2329, 2673, 3366 |
| BpuMI | CCSGG | 1 cut(s) | 987 |
| BsaAI | YACGTR | 1 cut(s) | 3056 |
| BsaBI | GATNNNNATC | 2 cut(s) | 903, 1086 |
| BsaJI | CCNNGG | 4 cut(s) | 417, 854, 930, 1662 |
| BsaWI | WCCGGW | 2 cut(s) | 173, 198 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 11, 41, 2419, 2449 |
| Bse118I | RCCGGY | 2 cut(s) | 198, 973 |
| Bse1I | ACTGG | 4 cut(s) | 734, 1486, 2142, 2803 |
| Bse8I | GATNNNNATC | 2 cut(s) | 903, 1086 |
| BseAI | TCCGGA | 1 cut(s) | 173 |
| BseBI | CCWGG | 3 cut(s) | 418, 1245, 1644 |
| BseDI | CCNNGG | 4 cut(s) | 417, 854, 930, 1662 |
| BseJI | GATNNNNATC | 2 cut(s) | 903, 1086 |
| BseMII | CTCAG | 3 cut(s) | 25, 2867, 3175 |
| BseNI | ACTGG | 4 cut(s) | 734, 1486, 2142, 2803 |
| BseRI | GAGGAG | 2 cut(s) | 819, 2440 |
| BseSI | GKGCMC | 2 cut(s) | 706, 1658 |
| BseYI | CCCAGC | 3 cut(s) | 348, 1921, 2918 |
| BsgI | GTGCAG | 1 cut(s) | 3051 |
| Bsh1236I | CGCG | 2 cut(s) | 631, 2950 |
| BshFI | GGCC | 5 cut(s) | 712, 1757, 1838, 1917, 2802 |
| BshTI | ACCGGT | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 3 cut(s) | 706, 826, 1658 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1623 |
| BsiSI | CCGG | 5 cut(s) | 174, 199, 681, 974, 986 |
| BslFI | GGGAC | 4 cut(s) | 1145, 1717, 1883, 3035 |
| BsmAI | GTCTC | 4 cut(s) | 62, 502, 1964, 2990 |
| BsmFI | GGGAC | 4 cut(s) | 1145, 1717, 1883, 3035 |
| BsmI | GAATGC | 4 cut(s) | 1018, 1403, 2496, 2807 |
| BsnI | GGCC | 5 cut(s) | 712, 1757, 1838, 1917, 2802 |
| BsoBI | CYCGRG | 1 cut(s) | 1623 |
| Bsp1286I | GDGCHC | 5 cut(s) | 637, 706, 826, 1658, 3309 |
| Bsp13I | TCCGGA | 1 cut(s) | 173 |
| Bsp1407I | TGTACA | 2 cut(s) | 73, 2953 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2853 |
| Bsp19I | CCATGG | 2 cut(s) | 930, 1662 |
| BspACI | CCGC | 9 cut(s) | 514, 631, 1443, 1783, 1839, 1939, 2651, 2657, 3239 |
| BspANI | GGCC | 5 cut(s) | 712, 1757, 1838, 1917, 2802 |
| BspCNI | CTCAG | 3 cut(s) | 24, 2866, 3174 |
| BspEI | TCCGGA | 1 cut(s) | 173 |
| BspFNI | CGCG | 2 cut(s) | 631, 2950 |
| BspHI | TCATGA | 1 cut(s) | 1510 |
| BspLI | GGNNCC | 7 cut(s) | 636, 667, 1242, 1518, 1756, 3050, 3051 |
| BspMAI | CTGCAG | 4 cut(s) | 1224, 2119, 2176, 3397 |
| BspMI | ACCTGC | 3 cut(s) | 652, 743, 1448 |
| BspOI | GCTAGC | 1 cut(s) | 2448 |
| BspPI | GGATC | 8 cut(s) | 609, 660, 673, 1162, 1203, 1235, 1248, 1627 |
| BspTI | CTTAAG | 1 cut(s) | 440 |
| BsrFI | RCCGGY | 2 cut(s) | 198, 973 |
| BsrGI | TGTACA | 2 cut(s) | 73, 2953 |
| BsrI | ACTGG | 4 cut(s) | 734, 1486, 2142, 2803 |
| BssAI | RCCGGY | 2 cut(s) | 198, 973 |
| BssECI | CCNNGG | 4 cut(s) | 417, 854, 930, 1662 |
| BssNAI | GTATAC | 1 cut(s) | 1497 |
| BssSI | CACGAG | 2 cut(s) | 607, 3230 |
| BssT1I | CCWWGG | 3 cut(s) | 854, 930, 1662 |
| Bst1107I | GTATAC | 1 cut(s) | 1497 |
| Bst2BI | CACGAG | 2 cut(s) | 607, 3230 |
| Bst2UI | CCWGG | 3 cut(s) | 418, 1245, 1644 |
| Bst6I | CTCTTC | 1 cut(s) | 1757 |
| BstAFI | CTTAAG | 1 cut(s) | 440 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1105, 2132, 2135, 2396 |
| BstAUI | TGTACA | 2 cut(s) | 73, 2953 |
| BstBAI | YACGTR | 1 cut(s) | 3056 |
| BstDEI | CTNAG | 4 cut(s) | 11, 1199, 2853, 3161 |
| BstDSI | CCRYGG | 2 cut(s) | 930, 1662 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 50, 696, 750 |
| BstFNI | CGCG | 2 cut(s) | 631, 2950 |
| BstHHI | GCGC | 1 cut(s) | 631 |
| BstMAI | GTCTC | 4 cut(s) | 62, 502, 1964, 2990 |
| BstNI | CCWGG | 3 cut(s) | 418, 1245, 1644 |
| BstNSI | RCATGY | 1 cut(s) | 970 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2526 |
| BstSCI | CCNGG | 4 cut(s) | 416, 985, 1243, 1642 |
| BstSFI | CTRYAG | 5 cut(s) | 879, 1220, 2115, 2172, 3393 |
| BstSLI | GKGCMC | 2 cut(s) | 706, 1658 |
| BstUI | CGCG | 2 cut(s) | 631, 2950 |
| BstV2I | GAAGAC | 1 cut(s) | 933 |
| BstX2I | RGATCY | 5 cut(s) | 665, 1154, 1195, 1240, 1619 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 280, 1078 |
| BstYI | RGATCY | 5 cut(s) | 665, 1154, 1195, 1240, 1619 |
| BstZ17I | GTATAC | 1 cut(s) | 1497 |
| BsuI | GTATCC | 1 cut(s) | 1946 |
| BsuRI | GGCC | 5 cut(s) | 712, 1757, 1838, 1917, 2802 |
| BtgI | CCRYGG | 2 cut(s) | 930, 1662 |
| BtrI | CACGTC | 1 cut(s) | 3298 |
| BtsI | GCAGTG | 3 cut(s) | 656, 3050, 3373 |
| BtsIMutI | CAGTG | 6 cut(s) | 656, 774, 1678, 2149, 3050, 3373 |
| BveI | ACCTGC | 3 cut(s) | 652, 743, 1448 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1105, 1891, 2114, 2132, 2135, 2591 |
| CciI | TCATGA | 1 cut(s) | 1510 |
| CfoI | GCGC | 1 cut(s) | 631 |
| Cfr10I | RCCGGY | 2 cut(s) | 198, 973 |
| Cfr13I | GGNCC | 7 cut(s) | 270, 710, 1755, 1767, 2067, 2968, 3049 |
| Csp6I | GTAC | 9 cut(s) | 74, 166, 397, 886, 1119, 1683, 2819, 2954, 3221 |
| CspAI | ACCGGT | 1 cut(s) | 198 |
| CviQI | GTAC | 9 cut(s) | 74, 166, 397, 886, 1119, 1683, 2819, 2954, 3221 |
| DdeI | CTNAG | 4 cut(s) | 11, 1199, 2853, 3161 |
| DraI | TTTAAA | 1 cut(s) | 303 |
| DraIII | CACNNNGTG | 1 cut(s) | 701 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3171 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3171 |
| EaeI | YGGCCR | 1 cut(s) | 1836 |
| Eam1104I | CTCTTC | 1 cut(s) | 1757 |
| EarI | CTCTTC | 1 cut(s) | 1757 |
| Eco130I | CCWWGG | 3 cut(s) | 854, 930, 1662 |
| Eco147I | AGGCCT | 1 cut(s) | 1917 |
| Eco24I | GRGCYC | 2 cut(s) | 637, 3309 |
| Eco32I | GATATC | 1 cut(s) | 2343 |
| Eco47I | GGWCC | 5 cut(s) | 270, 1767, 2067, 2968, 3049 |
| Eco57I | CTGAAG | 6 cut(s) | 819, 966, 2094, 2259, 2553, 3339 |
| Eco72I | CACGTG | 1 cut(s) | 3056 |
| Eco88I | CYCGRG | 1 cut(s) | 1623 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 50, 696, 750 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1767, 2067, 3049 |
| EcoRI | GAATTC | 2 cut(s) | 2016, 2869 |
| EcoRII | CCWGG | 3 cut(s) | 416, 1243, 1642 |
| EcoRV | GATATC | 1 cut(s) | 2343 |
| EcoT14I | CCWWGG | 3 cut(s) | 854, 930, 1662 |
| EcoT22I | ATGCAT | 1 cut(s) | 2062 |
| EcoT38I | GRGCYC | 2 cut(s) | 637, 3309 |
| ErhI | CCWWGG | 3 cut(s) | 854, 930, 1662 |
| FaqI | GGGAC | 4 cut(s) | 1145, 1717, 1883, 3035 |
| FauI | CCCGC | 2 cut(s) | 624, 1436 |
| FbaI | TGATCA | 1 cut(s) | 904 |
| FblI | GTMKAC | 1 cut(s) | 1496 |
| FriOI | GRGCYC | 2 cut(s) | 637, 3309 |
| GlaI | GCGC | 1 cut(s) | 630 |
| GsaI | CCCAGC | 3 cut(s) | 352, 1925, 2922 |
| GsuI | CTGGAG | 1 cut(s) | 104 |
| HaeIII | GGCC | 5 cut(s) | 712, 1757, 1838, 1917, 2802 |
| HapII | CCGG | 5 cut(s) | 174, 199, 681, 974, 986 |
| HhaI | GCGC | 1 cut(s) | 631 |
| Hin6I | GCGC | 1 cut(s) | 629 |
| HinP1I | GCGC | 1 cut(s) | 629 |
| HincII | GTYRAC | 2 cut(s) | 964, 1258 |
| HindII | GTYRAC | 2 cut(s) | 964, 1258 |
| HindIII | AAGCTT | 3 cut(s) | 532, 1005, 2771 |
| HpaI | GTTAAC | 2 cut(s) | 964, 1258 |
| HpaII | CCGG | 5 cut(s) | 174, 199, 681, 974, 986 |
| HphI | GGTGA | 6 cut(s) | 337, 633, 1355, 1730, 1856, 2460 |
| HpyAV | CCTTC | 8 cut(s) | 780, 794, 885, 1499, 1745, 2301, 3195, 3314 |
| HpyCH4IV | ACGT | 4 cut(s) | 2669, 3055, 3219, 3297 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 1199, 2853, 3161 |
| HpySE526I | ACGT | 4 cut(s) | 2669, 3055, 3219, 3297 |
| HspAI | GCGC | 1 cut(s) | 629 |
| KflI | GGGWCCC | 1 cut(s) | 3049 |
| Kpn2I | TCCGGA | 1 cut(s) | 173 |
| Ksp22I | TGATCA | 1 cut(s) | 904 |
| KspAI | GTTAAC | 2 cut(s) | 964, 1258 |
| LmnI | GCTCC | 9 cut(s) | 19, 85, 640, 806, 829, 1162, 1522, 1645, 2843 |
| MaeII | ACGT | 4 cut(s) | 2669, 3055, 3219, 3297 |
| MaeIII | GTNAC | 9 cut(s) | 778, 976, 1039, 1343, 2025, 2080, 2332, 2435, 2780 |
| MboII | GAAGA | 8 cut(s) | 97, 338, 933, 1774, 2252, 2272, 2546, 3188 |
| MflI | RGATCY | 5 cut(s) | 665, 1154, 1195, 1240, 1619 |
| MhlI | GDGCHC | 5 cut(s) | 637, 706, 826, 1658, 3309 |
| MluI | ACGCGT | 1 cut(s) | 2948 |
| MlyI | GAGTC | 6 cut(s) | 511, 853, 1096, 1282, 1730, 2992 |
| MmeI | TCCRAC | 3 cut(s) | 737, 1132, 3367 |
| Mph1103I | ATGCAT | 1 cut(s) | 2062 |
| MroI | TCCGGA | 1 cut(s) | 173 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1554, 2541, 2602 |
| MspA1I | CMGCKG | 5 cut(s) | 791, 839, 1841, 2132, 2918 |
| MspCI | CTTAAG | 1 cut(s) | 440 |
| MspI | CCGG | 5 cut(s) | 174, 199, 681, 974, 986 |
| MspR9I | CCNGG | 4 cut(s) | 418, 987, 1245, 1644 |
| Mva1269I | GAATGC | 4 cut(s) | 1018, 1403, 2496, 2807 |
| MvaI | CCWGG | 3 cut(s) | 418, 1245, 1644 |
| MvnI | CGCG | 2 cut(s) | 631, 2950 |
| NciI | CCSGG | 1 cut(s) | 987 |
| NcoI | CCATGG | 2 cut(s) | 930, 1662 |
| NheI | GCTAGC | 1 cut(s) | 2444 |
| NlaIV | GGNNCC | 7 cut(s) | 636, 667, 1242, 1518, 1756, 3050, 3051 |
| NmuCI | GTSAC | 5 cut(s) | 1039, 1343, 2080, 2332, 2780 |
| NsiI | ATGCAT | 1 cut(s) | 2062 |
| NspI | RCATGY | 1 cut(s) | 970 |
| OliI | CACNNNNGTG | 2 cut(s) | 185, 609 |
| PagI | TCATGA | 1 cut(s) | 1510 |
| PaqCI | CACCTGC | 1 cut(s) | 652 |
| PceI | AGGCCT | 1 cut(s) | 1917 |
| PciI | ACATGT | 1 cut(s) | 966 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2026 |
| PctI | GAATGC | 4 cut(s) | 1018, 1403, 2496, 2807 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1554, 2541, 2602 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 662 |
| PinAI | ACCGGT | 1 cut(s) | 198 |
| PleI | GAGTC | 6 cut(s) | 511, 853, 1096, 1281, 1729, 2992 |
| PmaCI | CACGTG | 1 cut(s) | 3056 |
| PmlI | CACGTG | 1 cut(s) | 3056 |
| PpsI | GAGTC | 6 cut(s) | 511, 853, 1096, 1281, 1729, 2992 |
| Ppu21I | YACGTR | 1 cut(s) | 3056 |
| PpuMI | RGGWCCY | 3 cut(s) | 1767, 2067, 3049 |
| PscI | ACATGT | 1 cut(s) | 966 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2526 |
| PshBI | ATTAAT | 1 cut(s) | 3180 |
| Psp1406I | AACGTT | 1 cut(s) | 2669 |
| Psp5II | RGGWCCY | 3 cut(s) | 1767, 2067, 3049 |
| Psp6I | CCWGG | 3 cut(s) | 416, 1243, 1642 |
| PspCI | CACGTG | 1 cut(s) | 3056 |
| PspFI | CCCAGC | 3 cut(s) | 348, 1921, 2918 |
| PspGI | CCWGG | 3 cut(s) | 416, 1243, 1642 |
| PspN4I | GGNNCC | 7 cut(s) | 636, 667, 1242, 1518, 1756, 3050, 3051 |
| PspPI | GGNCC | 7 cut(s) | 270, 710, 1755, 1767, 2067, 2968, 3049 |
| PspPPI | RGGWCCY | 3 cut(s) | 1767, 2067, 3049 |
| PstI | CTGCAG | 4 cut(s) | 1224, 2119, 2176, 3397 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1105, 1891, 2114, 2132, 2135, 2591 |
| PsuI | RGATCY | 5 cut(s) | 665, 1154, 1195, 1240, 1619 |
| PvuII | CAGCTG | 4 cut(s) | 791, 839, 2132, 2918 |
| RsaI | GTAC | 9 cut(s) | 75, 167, 398, 887, 1120, 1684, 2820, 2955, 3222 |
| RsaNI | GTAC | 9 cut(s) | 74, 166, 397, 886, 1119, 1683, 2819, 2954, 3221 |
| Sau96I | GGNCC | 7 cut(s) | 270, 710, 1755, 1767, 2067, 2968, 3049 |
| SchI | GAGTC | 6 cut(s) | 511, 853, 1096, 1282, 1730, 2992 |
| ScrFI | CCNGG | 4 cut(s) | 418, 987, 1245, 1644 |
| SduI | GDGCHC | 5 cut(s) | 637, 706, 826, 1658, 3309 |
| SfcI | CTRYAG | 5 cut(s) | 879, 1220, 2115, 2172, 3393 |
| SinI | GGWCC | 5 cut(s) | 270, 1767, 2067, 2968, 3049 |
| SmlI | CTYRAG | 6 cut(s) | 245, 440, 1306, 2308, 2688, 3381 |
| SmoI | CTYRAG | 6 cut(s) | 245, 440, 1306, 2308, 2688, 3381 |
| SpeI | ACTAGT | 2 cut(s) | 289, 1168 |
| SseBI | AGGCCT | 1 cut(s) | 1917 |
| SsiI | CCGC | 9 cut(s) | 514, 631, 1443, 1783, 1839, 1939, 2651, 2657, 3239 |
| SspI | AATATT | 3 cut(s) | 119, 1882, 2701 |
| StuI | AGGCCT | 1 cut(s) | 1917 |
| StyD4I | CCNGG | 4 cut(s) | 416, 985, 1243, 1642 |
| StyI | CCWWGG | 3 cut(s) | 854, 930, 1662 |
| TaiI | ACGT | 4 cut(s) | 2672, 3058, 3222, 3300 |
| TaqI | TCGA | 6 cut(s) | 506, 1812, 2020, 2258, 2345, 3312 |
| TaqII | GACCGA | 1 cut(s) | 258 |
| TatI | WGTACW | 3 cut(s) | 73, 2818, 2953 |
| TauI | GCSGC | 3 cut(s) | 1841, 2653, 3242 |
| TscAI | CASTG | 6 cut(s) | 663, 781, 1678, 2149, 3050, 3373 |
| TseFI | GTSAC | 5 cut(s) | 1039, 1343, 2080, 2332, 2780 |
| Tsp45I | GTSAC | 5 cut(s) | 1039, 1343, 2080, 2332, 2780 |
| TspGWI | ACGGA | 4 cut(s) | 244, 414, 461, 1060 |
| TspRI | CASTG | 6 cut(s) | 663, 781, 1678, 2149, 3050, 3373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 662 |
| Vha464I | CTTAAG | 1 cut(s) | 440 |
| VneI | GTGCAC | 2 cut(s) | 702, 1654 |
| VpaK11BI | GGWCC | 5 cut(s) | 270, 1767, 2067, 2968, 3049 |
| VspI | ATTAAT | 1 cut(s) | 3180 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 50, 696, 750 |
| XapI | RAATTY | 6 cut(s) | 59, 367, 502, 1862, 2016, 2869 |
| XceI | RCATGY | 1 cut(s) | 970 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2149 |
| XmiI | GTMKAC | 1 cut(s) | 1496 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1554, 2541, 2602 |
| Zsp2I | ATGCAT | 1 cut(s) | 2062 |