Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Forward (+)

38569795 .. 38572025

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0316600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCCTCGTCAAAAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTAAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

233

Amino Acids

26.71

Weight (kDa)

9.28

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	4, 427
AclWI	GGATC	2 cut(s)	278, 370
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	93, 258, 407
AgsI	TTSAA	2 cut(s)	556, 571
AluBI	AGCT	5 cut(s)	63, 263, 281, 671, 699
AluI	AGCT	5 cut(s)	63, 263, 281, 671, 699
Alw21I	GWGCWC	2 cut(s)	65, 319
Alw26I	GTCTC	3 cut(s)	231, 413, 579
AlwI	GGATC	2 cut(s)	278, 370
AlwNI	CAGNNNCTG	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	476, 643
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 319
BbvCI	CCTCAGC	1 cut(s)	680
BccI	CCATC	3 cut(s)	143, 556, 643
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	231, 413, 579
BfaI	CTAG	2 cut(s)	225, 461
BglI	GCCNNNNNGGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	31, 32, 107
BmrFI	CCNGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	46, 266, 460, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 529, 559
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	3 cut(s)	305, 422, 522
BseDI	CCNNGG	4 cut(s)	46, 266, 460, 636
BseGI	GGATG	1 cut(s)	646
BseMI	GCAATG	3 cut(s)	305, 422, 522
BseMII	CTCAG	4 cut(s)	405, 654, 663, 694
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	65, 319
BsiSI	CCGG	2 cut(s)	71, 110
BslFI	GGGAC	3 cut(s)	16, 457, 519
BsmAI	GTCTC	3 cut(s)	231, 413, 579
BsmFI	GGGAC	3 cut(s)	16, 457, 519
Bsp1286I	GDGCHC	2 cut(s)	65, 319
Bsp143I	GATC	4 cut(s)	270, 362, 466, 690
BspACI	CCGC	2 cut(s)	4, 427
BspCNI	CTCAG	4 cut(s)	406, 655, 664, 693
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	31, 32, 107
BspPI	GGATC	2 cut(s)	278, 370
BsrDI	GCAATG	3 cut(s)	305, 422, 522
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	46, 266, 460, 636
BssMI	GATC	4 cut(s)	270, 362, 466, 690
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	460, 636
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	4 cut(s)	414, 663, 672, 680
BstDSI	CCRYGG	1 cut(s)	266
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	273, 365, 469, 693
BstMAI	GTCTC	3 cut(s)	231, 413, 579
BstMBI	GATC	4 cut(s)	270, 362, 466, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 443
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	75, 195
Csp6I	GTAC	3 cut(s)	92, 257, 406
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 671, 699
CviKI_1	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 671, 699
CviQI	GTAC	3 cut(s)	92, 257, 406
DdeI	CTNAG	4 cut(s)	414, 663, 672, 680
DpnI	GATC	4 cut(s)	272, 364, 468, 692
DpnII	GATC	4 cut(s)	270, 362, 466, 690
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	460, 636
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	460, 636
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	460, 636
FaeI	CATG	1 cut(s)	362
FaiI	YATR	7 cut(s)	144, 255, 348, 360, 481, 503, 510
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	3 cut(s)	16, 457, 519
FatI	CATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 461
HapII	CCGG	2 cut(s)	71, 110
HgaI	GACGC	2 cut(s)	75, 195
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	5 cut(s)	19, 410, 440, 521, 542
HpaII	CCGG	2 cut(s)	71, 110
HphI	GGTGA	2 cut(s)	476, 643
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	4 cut(s)	100, 197, 395, 662
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	3 cut(s)	70, 86, 189
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	146, 310, 437, 446, 515, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 443
HpyF3I	CTNAG	4 cut(s)	414, 663, 672, 680
Hsp92II	CATG	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	270, 362, 466, 690
LmnI	GCTCC	3 cut(s)	111, 268, 502
LpnPI	CCDG	9 cut(s)	8, 84, 123, 210, 273, 370, 393, 408, 675
MaeI	CTAG	2 cut(s)	225, 461
MaeIII	GTNAC	3 cut(s)	350, 535, 631
MalI	GATC	4 cut(s)	272, 364, 468, 692
MboI	GATC	4 cut(s)	270, 362, 466, 690
MboII	GAAGA	3 cut(s)	88, 329, 339
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	65, 319
MluCI	AATT	4 cut(s)	246, 560, 603, 644
MlyI	GAGTC	4 cut(s)	28, 419, 530, 536
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	6 cut(s)	41, 44, 96, 409, 610, 689
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	2 cut(s)	150, 599
MspI	CCGG	2 cut(s)	71, 110
MspR9I	CCNGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	385, 443
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	4 cut(s)	270, 362, 466, 690
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	3 cut(s)	31, 32, 107
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	535, 631
NsiI	ATGCAT	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	27, 418, 529, 536
PpsI	GAGTC	4 cut(s)	27, 418, 529, 536
PpuMI	RGGWCCY	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	31, 32, 107
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	3 cut(s)	93, 258, 407
RsaNI	GTAC	3 cut(s)	92, 257, 406
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	150, 599
Sau3AI	GATC	4 cut(s)	270, 362, 466, 690
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 419, 530, 536
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	65, 319
SetI	ASST	7 cut(s)	11, 65, 265, 283, 466, 673, 701
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	4 cut(s)	246, 560, 603, 644
SsiI	CCGC	2 cut(s)	4, 427
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	225, 461
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	460, 636
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	246, 560, 603, 644
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	150, 599
Tru9I	TTAA	2 cut(s)	150, 599
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	535, 631
Tsp45I	GTSAC	2 cut(s)	535, 631
TspDTI	ATGAA	2 cut(s)	216, 657
TspGWI	ACGGA	2 cut(s)	79, 283
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	225, 461
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.