Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Forward (+)

22507405 .. 22516046

Gene Structure 8642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29170.t10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3417 bp

ATGTCTTCCCTCAGTAGGGAGCTTGTGTTCCTGATCTTGCAGTTTCTAGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAGGAATCTGGGTTTTTCTTTAATATGAAGTATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTGGAAAAGTACCTCTCTGGGTTCACTAAAGTGGACGATAACCGGTACTCCATGAAAATATTTTTTGAGATAAGGAAGCAGAAGTATCTCGAGGCATTGGACAAGCATGACAGGTCCAAAGCTGTGGACATTCTGGTGAAGGATTTAAAAGTGTTTGCCACATTTAATGAAGAACTTTTCAAGGAAATCACTCAGCTTTTGACACTGGATAATTTTAGGGAGAATGAACAACTATCCAAATATGGAGATACAAAGTCTGCAAGGGCAATTATGCTTGTTGAACTTAAGAAGCTGATTGAGGCAAATCCCTTATTCCGTGATAAATTGCAGTTCCCAAACCTAAAAAATTCAAGGCTCCGAACTCTGATTAACCAAAGCTTAAACTGGCAACATCAGCTTTGTAAGAATCCAAGGCCGAATCCAGATATAAAAACTCTTTTTGTGGATCACTCGTGCGGACAACCGAATGGTGCTCGGGCTCCATCACCTGCAAACAATCCCTTGCTTGGATCCTTACCAAAAGCTGGAGGATTTCCTCCTTTGGGTGCACATGGGCCCTTTCAACCTACACCAGCCCCAGTTCCAATTCCCCTTGCAGGTTGGATGTCTAATGCTTCCACTGTTACTCATCCAGCAGTTTCTGAAGGAGGAGCTATTGGTCTTGGTGGTCCCTCGATAACAGCGGCCTTGAAACATCCAAGGACTCCTCCAACTAACCCTTCTGTAGAGTACCCGTCTGGGGATTCTGATCATGTTTCTAAGCGAACAAGACCCATGGGACTTTCCAATGAGGTTAATCTCCCTGTTAACATATTGCCAGTGTCATTTCCGGGTCACAGTCATAGTCAGGCTTTGAATGCACCTGATGACTTGCCAAAGAATGTTGCTCGGACTTTAAATCAGGGTTCATCGCCCATGAGCATGGATTTTCATCCTGTTCAGCTGACGCTGCTTCTTGTTGGTACCAATGTGGGGGACATAGGGCTGTGGGAAGTTGGATCCAGGGAGCGACTGGTTTTAAGGAACTTCAAAGTTTGGGATCTTGGTTCTTGTTCAATGCCTCTACAGGCTGCTCTGGTAAAGGATCCTGGTGTATCTGTTAACCGTGTGATTTGGAGCCCTGATGGTTCTTTATTTGGTGTTGCTTACTCGAGGCACATTGTTCAAATCTACTCTTATCACGGAGGTGATGATATACGACAACACCTAGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTCTCTCACCCCAATAAGCAGCTTTGTGTAATAACCTGTGGGGATGACAAGACAATCAAGGTCTGGGATGCTGCAACTGGTTCAAAACAGTATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACACTATAAGGAAAACATTCAGTTTATCTTTTCAACAGCACTGGATGGAAAGATAAAGGCCTGGCTCTATGACAATTTGGGATCTCGAGTTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCATACAGTGCTGATGGCACAAGGCTCTTTTCGTGTGGGACAAGTAAAGAAGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGGGCAGTGAAAAGGACCTATCAAGGTTTCCGCAAACGTTCTTTCGGCGTTGTGCAATTTGATACTACGAAAAACCGGTTTTTGGCGGCTGGTGATGATTTCTCTATTAAATTCTGGGACATGGACAATGTTCAGCTTCTAACGACAGTTGATGCTGATGGAGGGCTCCCGGCTAGCCCCCGTATCCGCTTTAACAAGGATGGCACTCTCTTGGCTGTATCTGCCAATGAGAATGGGATTAAAATTTTGGGCAATGCAGATGGCATTCGGTTGTTGCGCACATTTGAGAATCTTTCTTATGATGCGTCAAGGACCTCTGAAGTTGTGACAAAGCCTGCAATGAATCCAATTTCTGTTGCTGCCGCCGCCGCCGCAGCTGCTTCAAGCGCTGGACTGGCTGAGAGAAGTGCATCAGCGGTTGCTATTTCTGGAATGAATGGGGAGGCTAGGAACTTGGGGGATGTGAAACCTAGAATAACTGAAGAATCCAATGACAAATCAAAGATTTGGAAACTCACTGAAATCAATGAACCGTCTCAATGTCGCTCCTTGAGGCTACCTGAAAACATGAGAGTAACCAAGATATCAAGATTAATCTATACAAATTCTGGTAATGCGATTCTTGCATTAGCATCAAATGCCATCCATTTGCTCTGGAAATGGCAAAGGAATGATCGCACCTCTGTTAGCAAGGCAACTGCCAGTGTTTCACCTCAACTTTGGCAGCCAACAAGTGGCATTCTAATGACAAATGATGTTACTGACACAAGTTCTGAAGAAGCTGTTCCTTGCTTTGCTTTATCCAAGAATGATTCTTATGTGATGTCAGCTTCTGGTGGAAAGATTTCTCTCTTCAATATGATGACATTTAAGACAATGACAACTTTCATGCCACCACCACCTGCTGCAACATTTCTTGCTTTCCATCCTCAAGATAACAATATCATAGCTATCGGCATGGACGATTCAACAATTCAGATATATAATGTCCGTGTGGATGAGGTTAAGAGCAAGCTTAAAGGTCACTCCAAAAGGATAACTGGCCTAGCATTTTCTCATGTATTAAATGTGCTAGTTTCGTCAGGAGCAGATGCTCAGGTTTGTGTATGGAATTCTGATGGATGGGAAAAGCAGAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCGTCTTCGCAGTCAGATACTCGTGTTCAGTTTCATCAGGATCAGACACACTTCTTGGTTGTGCATGAGACTCAACTGGCCATATTTGAAACTACAAAACTAGAATGTGTAAAGCAGTGGGTCCCACGTGATTCTGCTGCCCCAATCTCCCATGCAACATTCTCATGTGATAGCCAGCTTATTTATGCCAGCTTCTTAGATGCAACCGTGTGTGTCTTCAGTGCTGCAAATCTCAGATTACGATGTCGTATTAATCCTCCTGTTTATCTTCCTGCTAATGTCAGCAGTTCTAATGTACAGCCCCTTGTGATTGCGGCACATCCACAAGAACCAAATCAGTTTGCTTTAGGACTATCAGATGGTGCGGTTCATGTGTTTGAGCCGCTTGAATCAGAAGGCAAATGGGGCGTGCCTCCTCCTGCTGAAAATGGTTCAGCAAGCAGTGTGCCGGCTTCTCAAGTTGGAAATTCAAGTTCGGAACAGGCTCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

1139

Amino Acids

125.23

Weight (kDa)

6.67

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	2 - 116	1.1e-08	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	23 - 127	8.5e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	262 - 487	1.1e-17	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	269 - 504	1.2e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	271 - 402	3.8e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	282 - 406	2.5e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	283 - 401	4e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	284 - 409	1.3e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	285 - 497	8.7e-19	WDHD1 first WD40 domain
WDR55	PF24796	287 - 401	2.9e-07	WDR55
Beta-prop_WDR5	PF25175	288 - 496	8.9e-22	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	293 - 493	4.9e-14	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	305 - 401	6.7e-10	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	305 - 405	8.3e-09	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	310 - 411	6.3e-08	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	652, 2662
Acc16I	TGCGCA	1 cut(s)	2030
Acc36I	ACCTGC	3 cut(s)	652, 743, 2662
Acc65I	GGTACC	1 cut(s)	1118
AccB1I	GGYRCC	1 cut(s)	1118
AccB7I	CCANNNNNTGG	2 cut(s)	680, 2486
AccI	GTMKAC	1 cut(s)	1496
AclI	AACGTT	1 cut(s)	1789
AcoI	YGGCCR	1 cut(s)	3000
AcsI	RAATTY	6 cut(s)	502, 1862, 1995, 2356, 2863, 3388
AcuI	CTGAAG	5 cut(s)	819, 2091, 2253, 2547, 3124
AcvI	CACGTG	1 cut(s)	3050
AfaI	GTAC	5 cut(s)	167, 203, 887, 1120, 3219
AfeI	AGCGCT	1 cut(s)	2140
AflII	CTTAAG	1 cut(s)	440
AgeI	ACCGGT	2 cut(s)	198, 1827
AjnI	CCWGG	4 cut(s)	1157, 1243, 1598, 1642
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	2 cut(s)	185, 1341
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
Alw21I	GWGCWC	3 cut(s)	631, 706, 1658
Alw26I	GTCTC	3 cut(s)	62, 2292, 2984
Alw44I	GTGCAC	2 cut(s)	702, 1654
AlwNI	CAGNNNCTG	2 cut(s)	797, 2585
Ama87I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
Aor51HI	AGCGCT	1 cut(s)	2140
AoxI	GGCC	6 cut(s)	569, 710, 840, 1596, 2794, 3000
ApaI	GGGCCC	1 cut(s)	714
ApaLI	GTGCAC	2 cut(s)	702, 1654
ApoI	RAATTY	6 cut(s)	502, 1862, 1995, 2356, 2863, 3388
AseI	ATTAAT	2 cut(s)	2345, 3174
AsiGI	ACCGGT	2 cut(s)	198, 1827
Asp700I	GAANNNNTTC	3 cut(s)	1554, 2535, 2596
Asp718I	GGTACC	1 cut(s)	1118
AspLEI	GCGC	2 cut(s)	2031, 2141
AspS9I	GGNCC	7 cut(s)	270, 710, 711, 824, 1767, 2064, 3043
AsuC2I	CCSGG	2 cut(s)	987, 1922
AsuHPI	GGTGA	7 cut(s)	304, 633, 1355, 1403, 1730, 1856, 2454
AsuNHI	GCTAGC	1 cut(s)	1925
AvaI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
AvaII	GGWCC	5 cut(s)	270, 824, 1767, 2064, 3043
BaeGI	GKGCMC	3 cut(s)	706, 714, 1658
BaeI	ACNNNNGTAYC	4 cut(s)	1110, 1143, 2931, 2964
BalI	TGGCCA	1 cut(s)	3002
BamHI	GGATCC	3 cut(s)	665, 1154, 1240
BanI	GGYRCC	1 cut(s)	1118
BanII	GRGCYC	4 cut(s)	637, 714, 1277, 1920
BauI	CACGAG	2 cut(s)	607, 2943
BbrPI	CACGTG	1 cut(s)	3050
BbsI	GAAGAC	2 cut(s)	2919, 3130
Bbv12I	GWGCWC	3 cut(s)	631, 706, 1658
BciT130I	CCWGG	4 cut(s)	1159, 1245, 1600, 1644
BciVI	GTATCC	1 cut(s)	1946
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	2 cut(s)	987, 1922
BcoDI	GTCTC	3 cut(s)	62, 2292, 2984
BfaI	CTAG	9 cut(s)	47, 1364, 1400, 1926, 2199, 2223, 2798, 2825, 3023
BfmI	CTRYAG	2 cut(s)	879, 1220
BfoI	RGCGCY	1 cut(s)	2142
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	3 cut(s)	652, 743, 2662
BfuI	GTATCC	1 cut(s)	1946
Bme1390I	CCNGG	6 cut(s)	987, 1159, 1245, 1600, 1644, 1922
Bme18I	GGWCC	5 cut(s)	270, 824, 1767, 2064, 3043
BmeT110I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
BmgT120I	GGNCC	7 cut(s)	270, 710, 711, 824, 1767, 2064, 3043
BmrFI	CCNGG	6 cut(s)	987, 1159, 1245, 1600, 1644, 1922
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	9 cut(s)	1363, 1462, 1627, 1894, 2044, 2171, 2393, 2833, 3112
BmtI	GCTAGC	1 cut(s)	1929
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	2 cut(s)	2919, 3130
BpmI	CTGGAG	2 cut(s)	702, 1503
Bpu10I	CCTNAGC	1 cut(s)	2847
BpuEI	CTTGAG	3 cut(s)	2323, 2667, 3363
BpuMI	CCSGG	2 cut(s)	987, 1922
BsaAI	YACGTR	1 cut(s)	3050
BsaBI	GATNNNNATC	2 cut(s)	903, 1086
BsaJI	CCNNGG	5 cut(s)	566, 854, 930, 1158, 1662
BsaWI	WCCGGW	2 cut(s)	198, 1827
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 188, 218
Bse118I	RCCGGY	3 cut(s)	198, 1827, 3370
Bse3DI	GCAATG	2 cut(s)	2011, 2097
Bse8I	GATNNNNATC	2 cut(s)	903, 1086
BseBI	CCWGG	4 cut(s)	1159, 1245, 1600, 1644
BseDI	CCNNGG	5 cut(s)	566, 854, 930, 1158, 1662
BseJI	GATNNNNATC	2 cut(s)	903, 1086
BseMI	GCAATG	2 cut(s)	2011, 2097
BseMII	CTCAG	5 cut(s)	25, 362, 2142, 2861, 3169
BseRI	GAGGAG	3 cut(s)	819, 852, 3327
BseSI	GKGCMC	3 cut(s)	706, 714, 1658
BseYI	CCCAGC	1 cut(s)	2912
BshFI	GGCC	6 cut(s)	571, 712, 842, 1598, 2796, 3002
BshNI	GGYRCC	1 cut(s)	1118
BshTI	ACCGGT	2 cut(s)	198, 1827
BsiHKAI	GWGCWC	3 cut(s)	631, 706, 1658
BsiHKCI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
BsiSI	CCGG	5 cut(s)	199, 986, 1828, 1922, 3371
BslFI	GGGAC	6 cut(s)	810, 948, 1145, 1717, 1883, 3029
BsmAI	GTCTC	3 cut(s)	62, 2292, 2984
BsmBI	CGTCTC	1 cut(s)	2292
BsmFI	GGGAC	6 cut(s)	810, 948, 1145, 1717, 1883, 3029
BsmI	GAATGC	4 cut(s)	1018, 1403, 2016, 2490
BsnI	GGCC	6 cut(s)	571, 712, 842, 1598, 2796, 3002
BsoBI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	7 cut(s)	631, 637, 706, 714, 1277, 1658, 1920
Bsp1407I	TGTACA	1 cut(s)	3217
Bsp19I	CCATGG	2 cut(s)	930, 1662
BspANI	GGCC	6 cut(s)	571, 712, 842, 1598, 2796, 3002
BspCNI	CTCAG	5 cut(s)	24, 361, 2143, 2860, 3168
BspHI	TCATGA	1 cut(s)	1510
BspMI	ACCTGC	3 cut(s)	652, 743, 2662
BspOI	GCTAGC	1 cut(s)	1929
BspQI	GCTCTTC	1 cut(s)	2882
BspT107I	GGYRCC	1 cut(s)	1118
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	2011, 2097
BsrFI	RCCGGY	3 cut(s)	198, 1827, 3370
BsrGI	TGTACA	1 cut(s)	3217
BssAI	RCCGGY	3 cut(s)	198, 1827, 3370
BssECI	CCNNGG	5 cut(s)	566, 854, 930, 1158, 1662
BssNAI	GTATAC	1 cut(s)	1497
BssSI	CACGAG	2 cut(s)	607, 2943
BssT1I	CCWWGG	4 cut(s)	566, 854, 930, 1662
Bst1107I	GTATAC	1 cut(s)	1497
Bst2BI	CACGAG	2 cut(s)	607, 2943
Bst2UI	CCWGG	4 cut(s)	1159, 1245, 1600, 1644
Bst6I	CTCTTC	2 cut(s)	2609, 2882
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	2 cut(s)	1673, 2390
BstAUI	TGTACA	1 cut(s)	3217
BstBAI	YACGTR	1 cut(s)	3050
BstC8I	GCNNGC	8 cut(s)	1927, 2088, 2765, 3098, 3112, 3332, 3361, 3372
BstDEI	CTNAG	8 cut(s)	11, 348, 915, 2151, 2847, 3118, 3155, 3408
BstDSI	CCRYGG	2 cut(s)	930, 1662
BstH2I	RGCGCY	1 cut(s)	2142
BstHHI	GCGC	2 cut(s)	2031, 2141
BstMAI	GTCTC	3 cut(s)	62, 2292, 2984
BstNI	CCWGG	4 cut(s)	1159, 1245, 1600, 1644
BstSCI	CCNGG	6 cut(s)	985, 1157, 1243, 1598, 1642, 1920
BstSFI	CTRYAG	2 cut(s)	879, 1220
BstSLI	GKGCMC	3 cut(s)	706, 714, 1658
BstV2I	GAAGAC	2 cut(s)	2919, 3130
BstX2I	RGATCY	5 cut(s)	665, 1154, 1195, 1240, 1619
BstXI	CCANNNNNNTGG	2 cut(s)	280, 1078
BstYI	RGATCY	5 cut(s)	665, 1154, 1195, 1240, 1619
BstZ17I	GTATAC	1 cut(s)	1497
BsuI	GTATCC	1 cut(s)	1946
BsuRI	GGCC	6 cut(s)	571, 712, 842, 1598, 2796, 3002
BtgI	CCRYGG	2 cut(s)	930, 1662
BtgZI	GCGATG	1 cut(s)	1050
BtsI	GCAGTG	3 cut(s)	1764, 3044, 3370
BveI	ACCTGC	3 cut(s)	652, 743, 2662
Cac8I	GCNNGC	8 cut(s)	1927, 2088, 2765, 3098, 3112, 3332, 3361, 3372
CaiI	CAGNNNCTG	2 cut(s)	797, 2585
CciI	TCATGA	1 cut(s)	1510
CfoI	GCGC	2 cut(s)	2031, 2141
Cfr10I	RCCGGY	3 cut(s)	198, 1827, 3370
Cfr13I	GGNCC	7 cut(s)	270, 710, 711, 824, 1767, 2064, 3043
CseI	GACGC	2 cut(s)	1111, 2046
Csp6I	GTAC	5 cut(s)	166, 202, 886, 1119, 3218
CspAI	ACCGGT	2 cut(s)	198, 1827
CviQI	GTAC	5 cut(s)	166, 202, 886, 1119, 3218
DdeI	CTNAG	8 cut(s)	11, 348, 915, 2151, 2847, 3118, 3155, 3408
DraI	TTTAAA	2 cut(s)	303, 1053
EaeI	YGGCCR	1 cut(s)	3000
Eam1104I	CTCTTC	2 cut(s)	2609, 2882
EarI	CTCTTC	2 cut(s)	2609, 2882
Eco130I	CCWWGG	4 cut(s)	566, 854, 930, 1662
Eco147I	AGGCCT	1 cut(s)	1598
Eco24I	GRGCYC	4 cut(s)	637, 714, 1277, 1920
Eco32I	GATATC	1 cut(s)	2337
Eco47I	GGWCC	5 cut(s)	270, 824, 1767, 2064, 3043
Eco47III	AGCGCT	1 cut(s)	2140
Eco57I	CTGAAG	5 cut(s)	819, 2091, 2253, 2547, 3124
Eco72I	CACGTG	1 cut(s)	3050
Eco88I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
EcoO109I	RGGNCCY	4 cut(s)	711, 1767, 2064, 3043
EcoRI	GAATTC	1 cut(s)	2863
EcoRII	CCWGG	4 cut(s)	1157, 1243, 1598, 1642
EcoRV	GATATC	1 cut(s)	2337
EcoT14I	CCWWGG	4 cut(s)	566, 854, 930, 1662
EcoT38I	GRGCYC	4 cut(s)	637, 714, 1277, 1920
ErhI	CCWWGG	4 cut(s)	566, 854, 930, 1662
Esp3I	CGTCTC	1 cut(s)	2292
FaqI	GGGAC	6 cut(s)	810, 948, 1145, 1717, 1883, 3029
FbaI	TGATCA	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	1496
FriOI	GRGCYC	4 cut(s)	637, 714, 1277, 1920
FspBI	CTAG	9 cut(s)	47, 1364, 1400, 1926, 2199, 2223, 2798, 2825, 3023
FspI	TGCGCA	1 cut(s)	2030
GlaI	GCGC	2 cut(s)	2030, 2140
GsaI	CCCAGC	1 cut(s)	2916
GsuI	CTGGAG	2 cut(s)	702, 1503
HaeII	RGCGCY	1 cut(s)	2142
HaeIII	GGCC	6 cut(s)	571, 712, 842, 1598, 2796, 3002
HapII	CCGG	5 cut(s)	199, 986, 1828, 1922, 3371
HgaI	GACGC	2 cut(s)	1111, 2046
HhaI	GCGC	2 cut(s)	2031, 2141
Hin6I	GCGC	2 cut(s)	2029, 2139
HinP1I	GCGC	2 cut(s)	2029, 2139
HincII	GTYRAC	2 cut(s)	964, 1258
HindII	GTYRAC	2 cut(s)	964, 1258
HindIII	AAGCTT	3 cut(s)	80, 532, 2765
HpaI	GTTAAC	2 cut(s)	964, 1258
HpaII	CCGG	5 cut(s)	199, 986, 1828, 1922, 3371
HphI	GGTGA	7 cut(s)	304, 633, 1355, 1403, 1730, 1856, 2454
Hpy166II	GTNNAC	9 cut(s)	76, 180, 190, 283, 704, 964, 1258, 1497, 1656
Hpy8I	GTNNAC	9 cut(s)	76, 180, 190, 283, 704, 964, 1258, 1497, 1656
HpyAV	CCTTC	7 cut(s)	289, 794, 885, 1499, 1709, 1745, 3311
HpyCH4IV	ACGT	2 cut(s)	1789, 3049
HpyF3I	CTNAG	8 cut(s)	11, 348, 915, 2151, 2847, 3118, 3155, 3408
HpySE526I	ACGT	2 cut(s)	1789, 3049
HspAI	GCGC	2 cut(s)	2029, 2139
KflI	GGGWCCC	1 cut(s)	3043
KpnI	GGTACC	1 cut(s)	1122
KroI	GCCGGC	1 cut(s)	3370
KroNI	GCCGGC	1 cut(s)	3372
Ksp22I	TGATCA	1 cut(s)	904
KspAI	GTTAAC	2 cut(s)	964, 1258
LguI	GCTCTTC	1 cut(s)	2882
LweI	GCATC	9 cut(s)	1363, 1462, 1627, 1894, 2044, 2171, 2393, 2833, 3112
MaeI	CTAG	9 cut(s)	47, 1364, 1400, 1926, 2199, 2223, 2798, 2825, 3023
MaeII	ACGT	2 cut(s)	1789, 3049
MaeIII	GTNAC	6 cut(s)	778, 989, 2077, 2326, 2509, 2774
MboII	GAAGA	8 cut(s)	338, 2246, 2540, 2596, 2899, 2919, 3130, 3182
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	5 cut(s)	665, 1154, 1195, 1240, 1619
MhlI	GDGCHC	7 cut(s)	631, 637, 706, 714, 1277, 1658, 1920
MlsI	TGGCCA	1 cut(s)	3002
MluNI	TGGCCA	1 cut(s)	3002
MlyI	GAGTC	3 cut(s)	853, 1730, 2986
MmeI	TCCRAC	4 cut(s)	737, 890, 1132, 3364
Mox20I	TGGCCA	1 cut(s)	3002
MroNI	GCCGGC	1 cut(s)	3370
MroXI	GAANNNNTTC	3 cut(s)	1554, 2535, 2596
MscI	TGGCCA	1 cut(s)	3002
MslI	CAYNNNNRTG	8 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2495, 3085
Msp20I	TGGCCA	1 cut(s)	3002
MspA1I	CMGCKG	5 cut(s)	839, 1099, 2129, 2168, 2912
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	5 cut(s)	199, 986, 1828, 1922, 3371
MspR9I	CCNGG	6 cut(s)	987, 1159, 1245, 1600, 1644, 1922
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	4 cut(s)	1018, 1403, 2016, 2490
MvaI	CCWGG	4 cut(s)	1159, 1245, 1600, 1644
NaeI	GCCGGC	1 cut(s)	3372
NciI	CCSGG	2 cut(s)	987, 1922
NcoI	CCATGG	2 cut(s)	930, 1662
NgoMIV	GCCGGC	1 cut(s)	3370
NheI	GCTAGC	1 cut(s)	1925
NmuCI	GTSAC	3 cut(s)	989, 2077, 2774
NsbI	TGCGCA	1 cut(s)	2030
OliI	CACNNNNGTG	2 cut(s)	185, 1341
PaeR7I	CTCGAG	3 cut(s)	245, 1306, 1623
PagI	TCATGA	1 cut(s)	1510
PaqCI	CACCTGC	2 cut(s)	652, 2662
PceI	AGGCCT	1 cut(s)	1598
PciSI	GCTCTTC	1 cut(s)	2882
PcsI	WCGNNNNNNNCGW	1 cut(s)	2712
PctI	GAATGC	4 cut(s)	1018, 1403, 2016, 2490
PdiI	GCCGGC	1 cut(s)	3372
PdmI	GAANNNNTTC	3 cut(s)	1554, 2535, 2596
PflMI	CCANNNNNTGG	2 cut(s)	680, 2486
PinAI	ACCGGT	2 cut(s)	198, 1827
PleI	GAGTC	3 cut(s)	853, 1729, 2986
PmaCI	CACGTG	1 cut(s)	3050
PmlI	CACGTG	1 cut(s)	3050
PpsI	GAGTC	3 cut(s)	853, 1729, 2986
Ppu21I	YACGTR	1 cut(s)	3050
PpuMI	RGGWCCY	3 cut(s)	1767, 2064, 3043
PshBI	ATTAAT	2 cut(s)	2345, 3174
Psp1406I	AACGTT	1 cut(s)	1789
Psp5II	RGGWCCY	3 cut(s)	1767, 2064, 3043
Psp6I	CCWGG	4 cut(s)	1157, 1243, 1598, 1642
PspCI	CACGTG	1 cut(s)	3050
PspFI	CCCAGC	1 cut(s)	2912
PspGI	CCWGG	4 cut(s)	1157, 1243, 1598, 1642
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	7 cut(s)	270, 710, 711, 824, 1767, 2064, 3043
PspPPI	RGGWCCY	3 cut(s)	1767, 2064, 3043
PspXI	VCTCGAGB	1 cut(s)	1306
PstNI	CAGNNNCTG	2 cut(s)	797, 2585
PsuI	RGATCY	5 cut(s)	665, 1154, 1195, 1240, 1619
PvuII	CAGCTG	3 cut(s)	1099, 2129, 2912
RsaI	GTAC	5 cut(s)	167, 203, 887, 1120, 3219
RsaNI	GTAC	5 cut(s)	166, 202, 886, 1119, 3218
RseI	CAYNNNNRTG	8 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2495, 3085
SapI	GCTCTTC	1 cut(s)	2882
Sau96I	GGNCC	7 cut(s)	270, 710, 711, 824, 1767, 2064, 3043
SchI	GAGTC	3 cut(s)	853, 1730, 2986
ScrFI	CCNGG	6 cut(s)	987, 1159, 1245, 1600, 1644, 1922
SduI	GDGCHC	7 cut(s)	631, 637, 706, 714, 1277, 1658, 1920
SfaNI	GCATC	9 cut(s)	1363, 1462, 1627, 1894, 2044, 2171, 2393, 2833, 3112
SfcI	CTRYAG	2 cut(s)	879, 1220
Sfr274I	CTCGAG	3 cut(s)	245, 1306, 1623
SinI	GGWCC	5 cut(s)	270, 824, 1767, 2064, 3043
SlaI	CTCGAG	3 cut(s)	245, 1306, 1623
SmiMI	CAYNNNNRTG	8 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2495, 3085
SmlI	CTYRAG	7 cut(s)	245, 440, 1306, 1623, 2302, 2682, 3378
SmoI	CTYRAG	7 cut(s)	245, 440, 1306, 1623, 2302, 2682, 3378
SseBI	AGGCCT	1 cut(s)	1598
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	9 cut(s)	47, 1364, 1400, 1926, 2199, 2223, 2798, 2825, 3023
StuI	AGGCCT	1 cut(s)	1598
StyD4I	CCNGG	6 cut(s)	985, 1157, 1243, 1598, 1642, 1920
StyI	CCWWGG	4 cut(s)	566, 854, 930, 1662
TaiI	ACGT	2 cut(s)	1792, 3052
TaqI	TCGA	4 cut(s)	246, 830, 1307, 1624
TatI	WGTACW	1 cut(s)	3217
TauI	GCSGC	8 cut(s)	842, 1841, 2117, 2120, 2123, 2126, 3239, 3307
TseFI	GTSAC	3 cut(s)	989, 2077, 2774
Tsp45I	GTSAC	3 cut(s)	989, 2077, 2774
TspGWI	ACGGA	3 cut(s)	461, 1353, 2732
Van91I	CCANNNNNTGG	2 cut(s)	680, 2486
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	2 cut(s)	702, 1654
VpaK11BI	GGWCC	5 cut(s)	270, 824, 1767, 2064, 3043
VspI	ATTAAT	2 cut(s)	2345, 3174
XapI	RAATTY	6 cut(s)	502, 1862, 1995, 2356, 2863, 3388
XbaI	TCTAGA	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1165
XhoI	CTCGAG	3 cut(s)	245, 1306, 1623
XmiI	GTMKAC	1 cut(s)	1496
XmnI	GAANNNNTTC	3 cut(s)	1554, 2535, 2596
XspI	CTAG	9 cut(s)	47, 1364, 1400, 1926, 2199, 2223, 2798, 2825, 3023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.