Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000064.1

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Reverse (-)

236813 .. 244573

Gene Structure 7761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000064.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3336 bp

atgtcttccctcagtagggagcttgtgttcctgatcttgcagtttctagatgaggaaaaattcaaagagactgttcacaagctagaacaggaatctgggtttttcttcaatatgaaatattttgaggatgaggtgcataatggcaattgggatgaagtagagaagtacctctctgggttcactaaagtggacgataaccgctactccatgaaaatatttttcgagataaggaagcagaagtatctcgaggcattggacaagcatgaccggtccaaagcggtggacatattggtgaaggatttaaaggtttttgccacatttaatgaagaacttttcaaggaaatcactcagcttttgacactggataattttagggagaatgaacagctatccaaatatggagatacaaagtctgccagggcaattatgctggttgaacttaagaaactgattgaggcgaaccccttattccgtgataaattgcaattcccaaacctcaaaaattcgaggctgcgaactctgattaaccaaagcttaaattggcagcatcagctttgtaagaatccaaggccgaatccagatataaaaactctttttgtggatcactcatgcggacaacccaatggtgctcgggccccgtcacctgcaaacaatccattgcttggatccttaccaaaagctggaggatttcctcctctaggtgcacatgggccctttcaacctacaccagccccggttccaatacctcttgcaggttggatgtctaatgcttctactgttactcatccagcagtttctgaaggaggagctattggtcttggtggtccctcgataacagctgccttgaaacatccaaggactcctccaactaacccttctgtagattacccgtctggggattctgatcatgtttctaagcgaacaagacccatgggactttccactgaggtaaatctccctgttaacatattgccagtgacatttccgggtcacagtcacagtcaggcgttgaatgcacctgatgacttgccaaagaacgtcgcacgaactttaaatcagggttcatcgcccatgagcatggattttcatcctgttcagcagactctgcttcttgttggtaccaatgtgggggacatagggctgtgggaagttggatccagggagcgactggttttaaggaacttcaaagtttgggatattagtacttgttcaatgcctctacaggctgctctggtaaaggatcctggtgtatctgttaaccgtgtgatttggagccctgatggttctttatttggtgttgcttactcgaggcacattgttcaaatatattcttatcacggaggtgatgatatacgacaacacttagagattgatgctcatgttggtggagtaaatgatctagcattctcccaccccaataagcagctttgtgtaataacctgtggggatgacaagacaatcaaggtgtgggatgctgcgactggttcaaaacagtatacttttgaaggtcatgaggctccggtttattctgtctgcccacattataaggaaaatattcagtttatcttttcaacggcactggatggaaaaataaaggcctggctctatgacaatttgggatctcgagttgattatgatgctcctggtcgctggtgcacaaccatggcatacagtgctgatggcacaaggctcttttcatgtgggacaagtaaagatggtgagtcatatattgttgaatggaatgaaagtgaaggggcagtgaaaaggacctatcaaggcttccgcaagcgttcttttggtgttgtgcaatttgatactacgaaaaaccggtttttggctgctggtgatgatttctctattaaattctgggacatggacaatgttcagcttctaatgacagttgatgctgatggaggcctcccggcaagcccccgtatccgctttaacaaggatggcactctcttggctgtatctgccaatgagaatgggattaaaattttgggcaatgcagatggtgttcggctgttgcgcacatttgagaatctttcttatgatgcatcaaggtcctctgaagttgtgacaaagcctgcaatgaacccaatttctgttgctgctgctgccgccgctgcagctgctacaagtgctggactggctgagagaaatgcatctgcagttgctgtttctggaatgaatggggatgctaggaacttgggggatgtgaaacctagaataactgaagaatccaatgacaaatcaaagatttggaaactcactgaaatcaacgaaccgtctcaatgtcgttccttgaggctacctgaaaatatgagagtaaccaagatatcaagattaatctatacaaattctggtaatgcaattctggcattagcatcgaatgccatccatttgctctggaaatggcaaaggaatgatcgcaattctgttagcaaggcaactgccagtgtttcacctcaactctggcagccaacaagtggcattctaatgacaaatgatgttactgacacaagtcctgaagaagctgttccttgctttgctttatccaagaatgattcttatgtaatgtcggcttctggtggaaagatttccctcttcaatatgatgacatttaagacgatgacaactttcatgccaccaccacctgcagcaacatttcttgctttccatcctcaagataacaatattatagctattggcatggatgattctacaattcagatatataatgtccgtgtggatgaggttaagagcaagcttaaaggtcactctaaaaggataactggcctagcattctctcatgtattaaatgtgctagtttcatcaggagcagatgctcaggtttgtgtgtggaattctgatggatgggaaaaacagaagagcagattcttgcagcttccagctgggagaacaccatcttcagtgtcagatactcgcgttcagtttcatcaggatcaggcacatttcttggttgtgcatgagactcagctggccatatttgaaacaacaaaactagaatgtgtaaagcagtggctcccacgtgaactacgatgttgtattaatcctcctgtttatcttcctgctaatgtcagcagttctaatgtacagcccctcgtgattgcggcacatccacaagaaccaaaccagtttgctctaggactatcagatggtgcggttcatgtgtttgagccccttgaatcagaaggcaaatgggagatgatcaagtggctggcagagcacaagttcttttacatgcttggcttgctggcccagttcaaatatagtttgtggttcctcatgcaaagtaatttactgaaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

1111

Amino Acids

123.33

Weight (kDa)

6.87

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1545
AarI	CACCTGC	2 cut(s)	652, 2665
Acc16I	TGCGCA	1 cut(s)	2030
Acc36I	ACCTGC	3 cut(s)	652, 743, 2665
Acc65I	GGTACC	1 cut(s)	1118
AccB1I	GGYRCC	1 cut(s)	1118
AccB7I	CCANNNNNTGG	3 cut(s)	662, 680, 2489
AccI	GTMKAC	1 cut(s)	1496
AccII	CGCG	1 cut(s)	2949
AciI	CCGC	9 cut(s)	199, 278, 612, 1783, 1939, 2121, 2124, 3134, 3185
AclWI	GGATC	9 cut(s)	609, 660, 673, 1149, 1162, 1235, 1248, 1627, 2973
AcoI	YGGCCR	1 cut(s)	3003
AcsI	RAATTY	6 cut(s)	59, 502, 1862, 1995, 2359, 2866
AcuI	CTGAAG	5 cut(s)	819, 2091, 2256, 2550, 2916
AcvI	CACGTG	1 cut(s)	3053
AfaI	GTAC	4 cut(s)	167, 1120, 1204, 3117
AflII	CTTAAG	1 cut(s)	440
AgeI	ACCGGT	2 cut(s)	267, 1827
AjnI	CCWGG	5 cut(s)	416, 1157, 1243, 1598, 1642
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	2 cut(s)	185, 1341
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
Alw21I	GWGCWC	4 cut(s)	631, 706, 1658, 3252
Alw26I	GTCTC	3 cut(s)	62, 2295, 2987
Alw44I	GTGCAC	2 cut(s)	702, 1654
AlwI	GGATC	9 cut(s)	609, 660, 673, 1149, 1162, 1235, 1248, 1627, 2973
AlwNI	CAGNNNCTG	3 cut(s)	797, 1105, 2177
Ama87I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
AoxI	GGCC	8 cut(s)	569, 633, 710, 1596, 1915, 2797, 3003, 3279
ApaI	GGGCCC	2 cut(s)	637, 714
ApaLI	GTGCAC	2 cut(s)	702, 1654
ApoI	RAATTY	6 cut(s)	59, 502, 1862, 1995, 2359, 2866
AseI	ATTAAT	2 cut(s)	2348, 3072
AsiGI	ACCGGT	2 cut(s)	267, 1827
Asp700I	GAANNNNTTC	3 cut(s)	1554, 2538, 2599
Asp718I	GGTACC	1 cut(s)	1118
AspLEI	GCGC	1 cut(s)	2031
AspS9I	GGNCC	9 cut(s)	270, 633, 634, 710, 711, 824, 1767, 2064, 3280
AsuC2I	CCSGG	3 cut(s)	734, 987, 1922
AsuHPI	GGTGA	6 cut(s)	304, 633, 1355, 1730, 1856, 2457
AvaI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
AvaII	GGWCC	4 cut(s)	270, 824, 1767, 2064
BaeGI	GKGCMC	4 cut(s)	637, 706, 714, 1658
BaeI	ACNNNNGTAYC	4 cut(s)	1110, 1143, 2934, 2967
BalI	TGGCCA	1 cut(s)	3005
BamHI	GGATCC	3 cut(s)	665, 1154, 1240
BanI	GGYRCC	1 cut(s)	1118
BanII	GRGCYC	4 cut(s)	637, 714, 1277, 3204
BauI	CACGAG	1 cut(s)	3125
BbrPI	CACGTG	1 cut(s)	3053
Bbv12I	GWGCWC	4 cut(s)	631, 706, 1658, 3252
BceAI	ACGGC	1 cut(s)	1590
BcgI	CGANNNNNNTGC	2 cut(s)	2370, 2404
BciT130I	CCWGG	5 cut(s)	418, 1159, 1245, 1600, 1644
BciVI	GTATCC	1 cut(s)	1946
BclI	TGATCA	2 cut(s)	904, 3231
BcnI	CCSGG	3 cut(s)	734, 987, 1922
BcoDI	GTCTC	3 cut(s)	62, 2295, 2987
BfmI	CTRYAG	5 cut(s)	879, 1220, 2127, 2169, 2658
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	3 cut(s)	652, 743, 2665
BfuI	GTATCC	1 cut(s)	1946
BmcAI	AGTACT	1 cut(s)	1204
Bme1390I	CCNGG	8 cut(s)	418, 734, 987, 1159, 1245, 1600, 1644, 1922
Bme18I	GGWCC	4 cut(s)	270, 824, 1767, 2064
BmeT110I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
BmgT120I	GGNCC	9 cut(s)	270, 633, 634, 710, 711, 824, 1767, 2064, 3280
BmrFI	CCNGG	8 cut(s)	418, 734, 987, 1159, 1245, 1600, 1644, 1922
BmrI	ACTGGG	1 cut(s)	3277
BmuI	ACTGGG	1 cut(s)	3277
BoxI	GACNNNNGTC	1 cut(s)	2523
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	2850
BpuEI	CTTGAG	2 cut(s)	2326, 2670
BpuMI	CCSGG	3 cut(s)	734, 987, 1922
BsaAI	YACGTR	1 cut(s)	3053
BsaBI	GATNNNNATC	2 cut(s)	903, 1086
BsaJI	CCNNGG	7 cut(s)	417, 566, 732, 854, 930, 1158, 1662
BsaWI	WCCGGW	3 cut(s)	267, 1519, 1827
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 188, 218
Bse118I	RCCGGY	2 cut(s)	267, 1827
Bse3DI	GCAATG	3 cut(s)	656, 2011, 2097
Bse8I	GATNNNNATC	2 cut(s)	903, 1086
BseBI	CCWGG	5 cut(s)	418, 1159, 1245, 1600, 1644
BseDI	CCNNGG	7 cut(s)	417, 566, 732, 854, 930, 1158, 1662
BseJI	GATNNNNATC	2 cut(s)	903, 1086
BseMI	GCAATG	3 cut(s)	656, 2011, 2097
BseMII	CTCAG	6 cut(s)	25, 362, 936, 2145, 2864, 3011
BseRI	GAGGAG	3 cut(s)	684, 819, 852
BseSI	GKGCMC	4 cut(s)	637, 706, 714, 1658
BseYI	CCCAGC	1 cut(s)	2915
Bsh1236I	CGCG	1 cut(s)	2949
BshFI	GGCC	8 cut(s)	571, 635, 712, 1598, 1917, 2799, 3005, 3281
BshNI	GGYRCC	1 cut(s)	1118
BshTI	ACCGGT	2 cut(s)	267, 1827
BsiHKAI	GWGCWC	4 cut(s)	631, 706, 1658, 3252
BsiHKCI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
BsiSI	CCGG	6 cut(s)	268, 734, 986, 1520, 1828, 1922
BslFI	GGGAC	5 cut(s)	810, 948, 1145, 1717, 1883
BsmAI	GTCTC	3 cut(s)	62, 2295, 2987
BsmBI	CGTCTC	1 cut(s)	2295
BsmFI	GGGAC	5 cut(s)	810, 948, 1145, 1717, 1883
BsmI	GAATGC	5 cut(s)	1018, 1403, 2398, 2493, 2804
BsnI	GGCC	8 cut(s)	571, 635, 712, 1598, 1917, 2799, 3005, 3281
BsoBI	CYCGRG	4 cut(s)	245, 630, 1306, 1623
Bsp120I	GGGCCC	2 cut(s)	633, 710
Bsp1286I	GDGCHC	8 cut(s)	631, 637, 706, 714, 1277, 1658, 3204, 3252
Bsp1407I	TGTACA	1 cut(s)	3115
Bsp19I	CCATGG	2 cut(s)	930, 1662
BspACI	CCGC	9 cut(s)	199, 278, 612, 1783, 1939, 2121, 2124, 3134, 3185
BspANI	GGCC	8 cut(s)	571, 635, 712, 1598, 1917, 2799, 3005, 3281
BspCNI	CTCAG	6 cut(s)	24, 361, 937, 2146, 2863, 3010
BspFNI	CGCG	1 cut(s)	2949
BspHI	TCATGA	1 cut(s)	1510
BspMAI	CTGCAG	3 cut(s)	2131, 2173, 2662
BspMI	ACCTGC	3 cut(s)	652, 743, 2665
BspPI	GGATC	9 cut(s)	609, 660, 673, 1149, 1162, 1235, 1248, 1627, 2973
BspQI	GCTCTTC	1 cut(s)	2885
BspT107I	GGYRCC	1 cut(s)	1118
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	3 cut(s)	656, 2011, 2097
BsrFI	RCCGGY	2 cut(s)	267, 1827
BsrGI	TGTACA	1 cut(s)	3115
BssAI	RCCGGY	2 cut(s)	267, 1827
BssECI	CCNNGG	7 cut(s)	417, 566, 732, 854, 930, 1158, 1662
BssNAI	GTATAC	1 cut(s)	1497
BssSI	CACGAG	1 cut(s)	3125
BssT1I	CCWWGG	4 cut(s)	566, 854, 930, 1662
Bst1107I	GTATAC	1 cut(s)	1497
Bst2BI	CACGAG	1 cut(s)	3125
Bst2UI	CCWGG	5 cut(s)	418, 1159, 1245, 1600, 1644
Bst4CI	ACNGT	9 cut(s)	73, 778, 995, 1001, 1262, 1494, 1673, 1900, 2289
Bst6I	CTCTTC	2 cut(s)	2612, 2885
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	3 cut(s)	1105, 1673, 2393
BstAUI	TGTACA	1 cut(s)	3115
BstBAI	YACGTR	1 cut(s)	3053
BstC8I	GCNNGC	8 cut(s)	1787, 1927, 2088, 2768, 3003, 3243, 3275, 3279
BstDEI	CTNAG	8 cut(s)	11, 348, 915, 945, 1363, 2154, 2850, 2997
BstDSI	CCRYGG	2 cut(s)	930, 1662
BstENI	CCTNNNNNAGG	2 cut(s)	696, 750
BstFNI	CGCG	1 cut(s)	2949
BstHHI	GCGC	1 cut(s)	2031
BstMAI	GTCTC	3 cut(s)	62, 2295, 2987
BstNI	CCWGG	5 cut(s)	418, 1159, 1245, 1600, 1644
BstNSI	RCATGY	1 cut(s)	3268
BstPAI	GACNNNNGTC	1 cut(s)	2523
BstSCI	CCNGG	8 cut(s)	416, 732, 985, 1157, 1243, 1598, 1642, 1920
BstSFI	CTRYAG	5 cut(s)	879, 1220, 2127, 2169, 2658
BstSLI	GKGCMC	4 cut(s)	637, 706, 714, 1658
BstUI	CGCG	1 cut(s)	2949
BstX2I	RGATCY	4 cut(s)	665, 1154, 1240, 1619
BstXI	CCANNNNNNTGG	2 cut(s)	280, 1078
BstYI	RGATCY	4 cut(s)	665, 1154, 1240, 1619
BstZ17I	GTATAC	1 cut(s)	1497
BsuI	GTATCC	1 cut(s)	1946
BsuRI	GGCC	8 cut(s)	571, 635, 712, 1598, 1917, 2799, 3005, 3281
BtgI	CCRYGG	2 cut(s)	930, 1662
BtgZI	GCGATG	1 cut(s)	1050
BtsI	GCAGTG	2 cut(s)	1764, 3047
BveI	ACCTGC	3 cut(s)	652, 743, 2665
Cac8I	GCNNGC	8 cut(s)	1787, 1927, 2088, 2768, 3003, 3243, 3275, 3279
CaiI	CAGNNNCTG	3 cut(s)	797, 1105, 2177
CciI	TCATGA	1 cut(s)	1510
CfoI	GCGC	1 cut(s)	2031
Cfr10I	RCCGGY	2 cut(s)	267, 1827
Cfr13I	GGNCC	9 cut(s)	270, 633, 634, 710, 711, 824, 1767, 2064, 3280
Csp6I	GTAC	4 cut(s)	166, 1119, 1203, 3116
CspAI	ACCGGT	2 cut(s)	267, 1827
CviQI	GTAC	4 cut(s)	166, 1119, 1203, 3116
DdeI	CTNAG	8 cut(s)	11, 348, 915, 945, 1363, 2154, 2850, 2997
DraI	TTTAAA	2 cut(s)	303, 1053
EaeI	YGGCCR	1 cut(s)	3003
Eam1104I	CTCTTC	2 cut(s)	2612, 2885
EarI	CTCTTC	2 cut(s)	2612, 2885
Eco130I	CCWWGG	4 cut(s)	566, 854, 930, 1662
Eco147I	AGGCCT	2 cut(s)	1598, 1917
Eco24I	GRGCYC	4 cut(s)	637, 714, 1277, 3204
Eco32I	GATATC	1 cut(s)	2340
Eco47I	GGWCC	4 cut(s)	270, 824, 1767, 2064
Eco57I	CTGAAG	5 cut(s)	819, 2091, 2256, 2550, 2916
Eco72I	CACGTG	1 cut(s)	3053
Eco88I	CYCGRG	4 cut(s)	245, 630, 1306, 1623
EcoNI	CCTNNNNNAGG	2 cut(s)	696, 750
EcoO109I	RGGNCCY	4 cut(s)	634, 711, 1767, 2064
EcoRI	GAATTC	1 cut(s)	2866
EcoRII	CCWGG	5 cut(s)	416, 1157, 1243, 1598, 1642
EcoRV	GATATC	1 cut(s)	2340
EcoT14I	CCWWGG	4 cut(s)	566, 854, 930, 1662
EcoT22I	ATGCAT	2 cut(s)	2059, 2167
EcoT38I	GRGCYC	4 cut(s)	637, 714, 1277, 3204
ErhI	CCWWGG	4 cut(s)	566, 854, 930, 1662
Esp3I	CGTCTC	1 cut(s)	2295
FaqI	GGGAC	5 cut(s)	810, 948, 1145, 1717, 1883
FbaI	TGATCA	2 cut(s)	904, 3231
FblI	GTMKAC	1 cut(s)	1496
FriOI	GRGCYC	4 cut(s)	637, 714, 1277, 3204
FspI	TGCGCA	1 cut(s)	2030
GlaI	GCGC	1 cut(s)	2030
GsaI	CCCAGC	1 cut(s)	2919
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	8 cut(s)	571, 635, 712, 1598, 1917, 2799, 3005, 3281
HapII	CCGG	6 cut(s)	268, 734, 986, 1520, 1828, 1922
HhaI	GCGC	1 cut(s)	2031
Hin6I	GCGC	1 cut(s)	2029
HinP1I	GCGC	1 cut(s)	2029
HincII	GTYRAC	2 cut(s)	964, 1258
HindII	GTYRAC	2 cut(s)	964, 1258
HindIII	AAGCTT	2 cut(s)	532, 2768
HpaI	GTTAAC	2 cut(s)	964, 1258
HpaII	CCGG	6 cut(s)	268, 734, 986, 1520, 1828, 1922
HphI	GGTGA	6 cut(s)	304, 633, 1355, 1730, 1856, 2457
Hpy188I	TCNGA	9 cut(s)	522, 799, 904, 2071, 2733, 2872, 2941, 3178, 3214
Hpy99I	CGWCG	1 cut(s)	1043
HpyAV	CCTTC	7 cut(s)	289, 794, 885, 1499, 1745, 3209, 3322
HpyCH4III	ACNGT	9 cut(s)	73, 778, 995, 1001, 1262, 1494, 1673, 1900, 2289
HpyCH4IV	ACGT	2 cut(s)	1038, 3052
HpyF3I	CTNAG	8 cut(s)	11, 348, 915, 945, 1363, 2154, 2850, 2997
HpySE526I	ACGT	2 cut(s)	1038, 3052
HspAI	GCGC	1 cut(s)	2029
KpnI	GGTACC	1 cut(s)	1122
Ksp22I	TGATCA	2 cut(s)	904, 3231
KspAI	GTTAAC	2 cut(s)	964, 1258
LguI	GCTCTTC	1 cut(s)	2885
LmnI	GCTCC	8 cut(s)	19, 806, 1162, 1272, 1522, 1645, 2840, 3051
MaeII	ACGT	2 cut(s)	1038, 3052
MaeIII	GTNAC	9 cut(s)	639, 778, 976, 989, 995, 2077, 2329, 2512, 2777
MboII	GAAGA	8 cut(s)	97, 338, 2249, 2543, 2599, 2902, 2922, 3080
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	4 cut(s)	665, 1154, 1240, 1619
MhlI	GDGCHC	8 cut(s)	631, 637, 706, 714, 1277, 1658, 3204, 3252
MlsI	TGGCCA	1 cut(s)	3005
MluNI	TGGCCA	1 cut(s)	3005
MlyI	GAGTC	4 cut(s)	853, 1096, 1730, 2989
MmeI	TCCRAC	3 cut(s)	737, 890, 1132
Mox20I	TGGCCA	1 cut(s)	3005
Mph1103I	ATGCAT	2 cut(s)	2059, 2167
MroXI	GAANNNNTTC	3 cut(s)	1554, 2538, 2599
MscI	TGGCCA	1 cut(s)	3005
MslI	CAYNNNNRTG	7 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2498
Msp20I	TGGCCA	1 cut(s)	3005
MspA1I	CMGCKG	5 cut(s)	839, 2126, 2132, 2915, 3001
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	6 cut(s)	268, 734, 986, 1520, 1828, 1922
MspR9I	CCNGG	8 cut(s)	418, 734, 987, 1159, 1245, 1600, 1644, 1922
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	5 cut(s)	1018, 1403, 2398, 2493, 2804
MvaI	CCWGG	5 cut(s)	418, 1159, 1245, 1600, 1644
MvnI	CGCG	1 cut(s)	2949
NciI	CCSGG	3 cut(s)	734, 987, 1922
NcoI	CCATGG	2 cut(s)	930, 1662
NmuCI	GTSAC	6 cut(s)	639, 976, 989, 995, 2077, 2777
NsbI	TGCGCA	1 cut(s)	2030
NsiI	ATGCAT	2 cut(s)	2059, 2167
NspI	RCATGY	1 cut(s)	3268
OliI	CACNNNNGTG	2 cut(s)	185, 1341
PaeR7I	CTCGAG	3 cut(s)	245, 1306, 1623
PagI	TCATGA	1 cut(s)	1510
PaqCI	CACCTGC	2 cut(s)	652, 2665
PceI	AGGCCT	2 cut(s)	1598, 1917
PciSI	GCTCTTC	1 cut(s)	2885
PcsI	WCGNNNNNNNCGW	1 cut(s)	3058
PctI	GAATGC	5 cut(s)	1018, 1403, 2398, 2493, 2804
PdmI	GAANNNNTTC	3 cut(s)	1554, 2538, 2599
PflMI	CCANNNNNTGG	3 cut(s)	662, 680, 2489
PinAI	ACCGGT	2 cut(s)	267, 1827
PleI	GAGTC	4 cut(s)	853, 1096, 1729, 2989
PmaCI	CACGTG	1 cut(s)	3053
PmlI	CACGTG	1 cut(s)	3053
PpsI	GAGTC	4 cut(s)	853, 1096, 1729, 2989
Ppu21I	YACGTR	1 cut(s)	3053
PpuMI	RGGWCCY	2 cut(s)	1767, 2064
PshAI	GACNNNNGTC	1 cut(s)	2523
PshBI	ATTAAT	2 cut(s)	2348, 3072
PsiI	TTATAA	1 cut(s)	1545
Psp5II	RGGWCCY	2 cut(s)	1767, 2064
Psp6I	CCWGG	5 cut(s)	416, 1157, 1243, 1598, 1642
PspCI	CACGTG	1 cut(s)	3053
PspFI	CCCAGC	1 cut(s)	2915
PspGI	CCWGG	5 cut(s)	416, 1157, 1243, 1598, 1642
PspOMI	GGGCCC	2 cut(s)	633, 710
PspPI	GGNCC	9 cut(s)	270, 633, 634, 710, 711, 824, 1767, 2064, 3280
PspPPI	RGGWCCY	2 cut(s)	1767, 2064
PspXI	VCTCGAGB	1 cut(s)	1306
PstI	CTGCAG	3 cut(s)	2131, 2173, 2662
PstNI	CAGNNNCTG	3 cut(s)	797, 1105, 2177
PsuI	RGATCY	4 cut(s)	665, 1154, 1240, 1619
PvuII	CAGCTG	4 cut(s)	839, 2132, 2915, 3001
RsaI	GTAC	4 cut(s)	167, 1120, 1204, 3117
RsaNI	GTAC	4 cut(s)	166, 1119, 1203, 3116
RseI	CAYNNNNRTG	7 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2498
SapI	GCTCTTC	1 cut(s)	2885
Sau96I	GGNCC	9 cut(s)	270, 633, 634, 710, 711, 824, 1767, 2064, 3280
ScaI	AGTACT	1 cut(s)	1204
SchI	GAGTC	4 cut(s)	853, 1096, 1730, 2989
ScrFI	CCNGG	8 cut(s)	418, 734, 987, 1159, 1245, 1600, 1644, 1922
SduI	GDGCHC	8 cut(s)	631, 637, 706, 714, 1277, 1658, 3204, 3252
SfcI	CTRYAG	5 cut(s)	879, 1220, 2127, 2169, 2658
Sfr274I	CTCGAG	3 cut(s)	245, 1306, 1623
SinI	GGWCC	4 cut(s)	270, 824, 1767, 2064
SlaI	CTCGAG	3 cut(s)	245, 1306, 1623
SmiMI	CAYNNNNRTG	7 cut(s)	185, 290, 1076, 1341, 1383, 1661, 2498
SmlI	CTYRAG	6 cut(s)	245, 440, 1306, 1623, 2305, 2685
SmoI	CTYRAG	6 cut(s)	245, 440, 1306, 1623, 2305, 2685
SseBI	AGGCCT	2 cut(s)	1598, 1917
SsiI	CCGC	9 cut(s)	199, 278, 612, 1783, 1939, 2121, 2124, 3134, 3185
SspI	AATATT	4 cut(s)	119, 216, 1555, 2698
StuI	AGGCCT	2 cut(s)	1598, 1917
StyD4I	CCNGG	8 cut(s)	416, 732, 985, 1157, 1243, 1598, 1642, 1920
StyI	CCWWGG	4 cut(s)	566, 854, 930, 1662
TaaI	ACNGT	9 cut(s)	73, 778, 995, 1001, 1262, 1494, 1673, 1900, 2289
TaiI	ACGT	2 cut(s)	1041, 3055
TaqI	TCGA	7 cut(s)	222, 246, 506, 830, 1307, 1624, 2390
TatI	WGTACW	2 cut(s)	1202, 3115
TauI	GCSGC	3 cut(s)	2123, 2126, 3137
TseFI	GTSAC	6 cut(s)	639, 976, 989, 995, 2077, 2777
Tsp45I	GTSAC	6 cut(s)	639, 976, 989, 995, 2077, 2777
TspGWI	ACGGA	3 cut(s)	461, 1353, 2735
Van91I	CCANNNNNTGG	3 cut(s)	662, 680, 2489
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	2 cut(s)	702, 1654
VpaK11BI	GGWCC	4 cut(s)	270, 824, 1767, 2064
VspI	ATTAAT	2 cut(s)	2348, 3072
XagI	CCTNNNNNAGG	2 cut(s)	696, 750
XapI	RAATTY	6 cut(s)	59, 502, 1862, 1995, 2359, 2866
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	1 cut(s)	3268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1165
XhoI	CTCGAG	3 cut(s)	245, 1306, 1623
XmiI	GTMKAC	1 cut(s)	1496
XmnI	GAANNNNTTC	3 cut(s)	1554, 2538, 2599
ZrmI	AGTACT	1 cut(s)	1204
Zsp2I	ATGCAT	2 cut(s)	2059, 2167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.