Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Forward (+)

61950424 .. 61957519

Gene Structure 7096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3195 bp

ATGGCGACGCCATCGGCGACAACGACAACACTGACTAAAGACCTCACTTTCTTGATCATGCAATTCCTTGACGAGGACAAGTGGAAGGATACGCTTCATAAGCTTCAGCAAGAATCAGGATACTTCTTCGACATGAAGTATTTCGAGGAATTATTGCTCGAGGGAAATTGGAATGAAGTCGAGAAGTATCTTTCCGGGTTCACTAAAGTGGATGACAACCGCTATTCGATGAAGATATTCTTCGAAATTCGTAAGCAGAAATACTTAGAAGCGCTGGATAGACATGATAGAGCTGCCGCAGTAGATATCCTAGTGAAGGATCTGAAAGTCTTTGCAGGTTTTAACGAAGACTTGTACAAGGAAATCACTCAGCTGCTCACTTTGAACAATTTTAGAGACAATGCTCAACTCTCTGCTTATGCAGATATAAGGACTGCAAGAGCAATTATGGCCCAAGAACTTAAGAAGCTTGTTGAGGCCAACCCTTCTTTCCGTGAAAAATTACAGTTCCCTAGCATTAAAAGTTCAAGGCTACGGACGCTTATTAACCAAAGACATTCCAGCGATCCATTTGCTCATTTAGCAGCAAATGGTCAGGCTCAACAGATGGGAGCAGTACAGAGAGCTGATGGCTTCATTCCTATCGGTGTAAATGGGTCCTTCCAACCCCCAATAGCACCAGTACCAATTCCACCTCCTTTGTCAACATGGACGTCCATACCCCCCAGTGTCAATCAGTTGGCAGCTTCTGCAGGAGGTATTGGTTTTGGCAGTCCAGCAAATCCAGCTTCATATTTGAACAGTCCAGCAAATCCTGAAGATTTGTTCAGAACACGGTTCCCTGGGGTTTCAGACAGGGTTATGCTGCCAGGGGTTAATCCAGGCCACGTTCTAAGTCCAGCATTCAATGCAATTGATGAGTTTCCGAAGGCTGTTGCCCGGATACTGAATCAGGGCTCAGTTCCCACTAGCATGGACTTCCATCCTCTTCAACAGACTATACTTCTAGTTGGAACTAGTATGGGGGATATAAGTGTCTGGGAAGTCAGTTCTAGGGAGAAGTTGGTATCAAGAAGCTTTCAGCCATGGGATATGGGGGCAAGTTCAATGATACTAAAGGCAACTTTAGTCAAGGATCCAAGTGTCTCAGTTAAGCGTGTACTATGGAGCCCTGATGGTTCTCTATTTGGAGTTGCATATTCTAAACACATGATGCAGTTATATGGTTATTTTGGTGGTGATGATGTTCGTCAGCATTTAGAGATCGATGCTCATGTTGGTAGTGTAAATGATCTGGCGTTCTGCAACCCAACTAAGCAACTCTGTGTCATAACTTGCGGTGATGATAAGGCCATCAAGGTCTGGGATGTGGCTACTGGATCAAAATTGTATACTTTTGAAGGTCATGAGGCTCCTGTTCATTCTGTGTGCCCTCATAGCAAAGAACATGTCCATTTTGTCTTTTCGACATCAGTAGATGGACAAATAAAAGCATGGTTATATGAAGTGGTGGGGCCCAGGGTTAATTACGATGCTCCCAGCCTCTCATGCACAACGATGGTTTATAGTGCAGATGGTAAAAGGCTTTTTTCATGTGGCACGAGCAAAGATGGAGAATCTCATGTTGTTGAATGGAATGAAAATGAAGGCACAATAAAGAGGAATTACCAAGGATTTCAAAAACTATCTTTGGGTGTTGTTCAATTTGACACAACCAGGAATAAGTATCTAGCAGTTGGTGACGACTATGCAATCAAAGTTTGGGATATGGATAATATCAATCTTTTGGCTACTATTGATGCTGAAGGAGGTCTACCAGCAACCCCTCGTATCCGCTTCAACAAGGAAGGATCTTTGTTAGCTGTTTCTGCAAATGACAACAGAATCAAAGTTTTGGCTACAACAGATGGTCTCCGATTGATGCGCAATTATGAAAGTCTCTCGCTTATTGCCTCTAGAAATGCACCAGAAAAGAATGGTAGCACCAGAAGCATGGAGGATAATAAGAAACCAAAGTTAACTGAAGAGCTCAAACCTGCAAAGATCTGGAAGCCCACTGAGATTAGTGAAACTGCTCGGCTTCGGTCTCTAAGGCTCTTGACAACTACAGTTAAAACAGACAAGATCTCAAGGTTGGTTTACACTAATTCAGGTAATGCCATTCTGGCATTATCATCAAATGGAACCCATCTACTGTGGAGGTGGCCACAAGCTGACCGTAGTACGATTGGCAAGGCAACAACCAATGTTACCCCAAAATTCGTGGAACAAGCTTCAGGCATCCTGATGATCAATGATCTTACTGGTGCTAAACCTGAAGATGCAATACCTTGCTTCGCTTTGTCCAAGAATGATTCGTATGTCATGTCAGCCTCGGGAGGGAAGATATCGTTGTTCAATCTAATGACATTCAAGACGATGACAAGTTTCATGTCGCCACCACCTGTGGTAACATGTGTTGCTTTCCACCCTGAAGACAATAATATAGTTGCTGTTGGATTTGATGATTCGACTATTCACATATACAATGTCCGTATCGATGAGGTTAGGATAAAGCTCAAGGGTCACTCTAAGAGAGTCACAGGCCTTGCGTTCTCTCAACTTCTGAAGACACTTGTTTCTTCTGGAGCAGATGCTCAGATAGTTGTGTGGAGCTCTGATAAGTGGGAAAGGCAGAAGAACAGTTTCTTGCAGGTTCCAGCTTGGACAACACCCACAGCACTGTTTGGAACTCATCTTCAGTATCAGAAGGATCAGAATCACTTCCTCGTTGTACACGAGACTCAACTTGCTGTATACGAAACCTTGAGGCTTGAATGCCAGAAGAAGTGGGTAGTAGGAGAATCTTCAGCACCAATCTCCTATGCAACATTCTCTTGTGATAGCCAGTTAGTCTACGCGAGCTTTCTTGATGGAACTGTGCGCGTGTTTGCAGCATCGAATCTTCAAATGCAATGCCAGATTAACCCCTATGCTTATCTTCCACCTAATGTCAGCTCTGCAACATACCCCCTAGTGATAGCTGCGAATCCACACGAGCCGAACCAGTTTGCAGTGGGACTAACAGATGGTGCAGTTGTCATGTTTGAACCACTTGAGTCTGGAGACAAATGGGGTGTGCCGCCACCAGCAGACAATGGTTGCTTCCATGCTTCAACTTCTGCCAATGGTTCCAGTTTAGAACTCCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1064

Amino Acids

117.69

Weight (kDa)

6.58

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	13 - 40	3.7e-09	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	44 - 168	1e-58	TPR1-like, CTLH-containing domain
Beta-prop_WDR3_1st	PF25173	363 - 534	1.5e-15	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	379 - 533	8.7e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	383 - 533	2.3e-14	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	383 - 640	2.3e-23	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	390 - 499	2.6e-08	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	399 - 500	3.2e-10	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	421 - 602	6.4e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	423 - 631	2e-15	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	434 - 500	3.8e-07	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	435 - 594	1.6e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	443 - 534	9.1e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	486 - 638	1.1e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	704 - 971	2.7e-15	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	771 - 891	2.8e-12	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	773 - 913	2.1e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	773 - 888	8.6e-15	WDR5 beta-propeller domain
Beta-prop_WDR5	PF25175	774 - 981	3.5e-19	WDR5 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	775 - 1007	7.7e-08	MABP1/WDR62 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	778 - 985	2.2e-12	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	781 - 981	7.6e-18	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	782 - 885	1.1e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	787 - 885	1.8e-16	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	789 - 885	1.1e-10	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	789 - 897	5.3e-09	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	794 - 888	7.7e-10	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	817 - 987	1.1e-09	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	716
Acc16I	TGCGCA	1 cut(s)	1925
Acc36I	ACCTGC	3 cut(s)	326, 2044, 2683
AccI	GTMKAC	4 cut(s)	1391, 1813, 2796, 2895
AccII	CGCG	2 cut(s)	2900, 2925
AciI	CCGC	5 cut(s)	220, 297, 1338, 1834, 3122
AclWI	GGATC	7 cut(s)	327, 560, 1130, 1143, 1387, 1858, 2760
AcoI	YGGCCR	1 cut(s)	2204
AcsI	RAATTY	2 cut(s)	246, 2258
AcyI	GRCGYC	2 cut(s)	8, 713
AfaI	GTAC	6 cut(s)	356, 618, 684, 1161, 2224, 2775
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	73, 316, 2379
AflII	CTTAAG	1 cut(s)	461
AflIII	ACRYGT	2 cut(s)	1447, 2453
AhlI	ACTAGT	1 cut(s)	1016
AjnI	CCWGG	5 cut(s)	841, 868, 880, 1517, 1715
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AleI	CACNNNNGTG	1 cut(s)	206
Alw21I	GWGCWC	2 cut(s)	2031, 2657
Alw26I	GTCTC	7 cut(s)	390, 1150, 1916, 1943, 2091, 2774, 3099
AlwI	GGATC	7 cut(s)	327, 560, 1130, 1143, 1387, 1858, 2760
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	2 cut(s)	158, 2374
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	7 cut(s)	450, 477, 883, 1350, 1514, 2204, 2584
ApaI	GGGCCC	1 cut(s)	1518
ApeKI	GCWGC	7 cut(s)	293, 373, 584, 743, 865, 2933, 3023
ApoI	RAATTY	2 cut(s)	246, 2258
ArsI	GACNNNNNNTTYG	2 cut(s)	1434, 1466
Asp700I	GAANNNNTTC	4 cut(s)	140, 236, 2684, 2762
AspLEI	GCGC	3 cut(s)	274, 1926, 2925
AspS9I	GGNCC	4 cut(s)	451, 657, 1514, 1515
AsuC2I	CCSGG	2 cut(s)	196, 940
AsuHPI	GGTGA	3 cut(s)	1250, 1352, 1751
AsuII	TTCGAA	1 cut(s)	243
AvaI	CYCGRG	2 cut(s)	158, 2374
AvaII	GGWCC	1 cut(s)	657
BaeGI	GKGCMC	2 cut(s)	1433, 1518
BalI	TGGCCA	1 cut(s)	2206
BamHI	GGATCC	1 cut(s)	1135
BanII	GRGCYC	5 cut(s)	959, 1172, 1518, 2031, 2657
BarI	GAAGNNNNNNTAC	4 cut(s)	1797, 1829, 2310, 2342
BauI	CACGAG	3 cut(s)	1600, 2777, 3035
BbsI	GAAGAC	3 cut(s)	354, 2481, 2615
Bbv12I	GWGCWC	2 cut(s)	2031, 2657
BbvI	GCAGC	7 cut(s)	280, 360, 596, 755, 852, 2945, 3010
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	5 cut(s)	843, 870, 882, 1519, 1717
BciVI	GTATCC	4 cut(s)	82, 113, 936, 1841
BclI	TGATCA	2 cut(s)	54, 2289
BcnI	CCSGG	2 cut(s)	196, 940
BcoDI	GTCTC	7 cut(s)	390, 1150, 1916, 1943, 2091, 2774, 3099
BcuI	ACTAGT	1 cut(s)	1016
BfaI	CTAG	9 cut(s)	311, 513, 969, 1007, 1017, 1053, 1730, 1956, 3014
BfmI	CTRYAG	2 cut(s)	750, 2106
BfoI	RGCGCY	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	461
BfuAI	ACCTGC	3 cut(s)	326, 2044, 2683
BfuI	GTATCC	4 cut(s)	82, 113, 936, 1841
BglI	GCCNNNNNGGC	1 cut(s)	2165
BglII	AGATCT	2 cut(s)	2043, 2124
BisI	GCNGC	9 cut(s)	294, 297, 374, 585, 744, 866, 2934, 3024, 3122
BlsI	GCNGC	9 cut(s)	295, 298, 375, 586, 745, 867, 2935, 3025, 3123
Bme1390I	CCNGG	7 cut(s)	196, 843, 870, 882, 940, 1519, 1717
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	2 cut(s)	158, 2374
BmgT120I	GGNCC	4 cut(s)	451, 657, 1514, 1515
BmrFI	CCNGG	7 cut(s)	196, 843, 870, 882, 940, 1519, 1717
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	9 cut(s)	1203, 1258, 1522, 1789, 1911, 2289, 2311, 2623, 2945
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	3 cut(s)	354, 2481, 2615
BpmI	CTGGAG	3 cut(s)	2646, 3123, 3170
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	4 cut(s)	2113, 2543, 2827, 3116
BpuMI	CCSGG	2 cut(s)	196, 940
Bsa29I	ATCGAT	2 cut(s)	1266, 2538
BsaBI	GATNNNNATC	1 cut(s)	2757
BsaHI	GRCGYC	2 cut(s)	8, 713
BsaI	GGTCTC	2 cut(s)	1916, 2091
BsaJI	CCNNGG	8 cut(s)	841, 842, 869, 1085, 1517, 1518, 1669, 2373
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 316, 2379
Bse1I	ACTGG	7 cut(s)	680, 726, 1381, 2308, 2887, 3046, 3174
Bse3DI	GCAATG	1 cut(s)	2960
Bse8I	GATNNNNATC	1 cut(s)	2757
BseBI	CCWGG	5 cut(s)	843, 870, 882, 1519, 1717
BseCI	ATCGAT	2 cut(s)	1266, 2538
BseDI	CCNNGG	8 cut(s)	841, 842, 869, 1085, 1517, 1518, 1669, 2373
BseGI	GGATG	4 cut(s)	217, 982, 1372, 2280
BseJI	GATNNNNATC	1 cut(s)	2757
BseLI	CCNNNNNNNGG	3 cut(s)	73, 316, 2379
BseMI	GCAATG	1 cut(s)	2960
BseMII	CTCAG	5 cut(s)	383, 972, 1161, 2049, 2651
BseNI	ACTGG	7 cut(s)	680, 726, 1381, 2308, 2887, 3046, 3174
BseSI	GKGCMC	2 cut(s)	1433, 1518
BseXI	GCAGC	7 cut(s)	280, 360, 596, 755, 852, 2945, 3010
BseYI	CCCAGC	1 cut(s)	1538
BsgI	GTGCAG	2 cut(s)	1590, 3093
Bsh1236I	CGCG	2 cut(s)	2900, 2925
BshFI	GGCC	7 cut(s)	452, 479, 885, 1352, 1516, 2206, 2586
BshVI	ATCGAT	2 cut(s)	1266, 2538
BsiHKAI	GWGCWC	2 cut(s)	2031, 2657
BsiHKCI	CYCGRG	2 cut(s)	158, 2374
BsiSI	CCGG	2 cut(s)	195, 940
BslFI	GGGAC	1 cut(s)	3072
BslI	CCNNNNNNNGG	3 cut(s)	73, 316, 2379
BsmAI	GTCTC	7 cut(s)	390, 1150, 1916, 1943, 2091, 2774, 3099
BsmFI	GGGAC	1 cut(s)	3072
BsmI	GAATGC	2 cut(s)	902, 2822
BsnI	GGCC	7 cut(s)	452, 479, 885, 1352, 1516, 2206, 2586
Bso31I	GGTCTC	2 cut(s)	1916, 2091
BsoBI	CYCGRG	2 cut(s)	158, 2374
Bsp119I	TTCGAA	1 cut(s)	243
Bsp120I	GGGCCC	1 cut(s)	1514
Bsp1286I	GDGCHC	6 cut(s)	959, 1172, 1433, 1518, 2031, 2657
Bsp1407I	TGTACA	2 cut(s)	354, 2773
Bsp19I	CCATGG	1 cut(s)	1085
BspACI	CCGC	5 cut(s)	220, 297, 1338, 1834, 3122
BspANI	GGCC	7 cut(s)	452, 479, 885, 1352, 1516, 2206, 2586
BspCNI	CTCAG	5 cut(s)	382, 971, 1160, 2050, 2650
BspDI	ATCGAT	2 cut(s)	1266, 2538
BspFNI	CGCG	2 cut(s)	2900, 2925
BspHI	TCATGA	1 cut(s)	1405
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	3 cut(s)	326, 2044, 2683
BspPI	GGATC	7 cut(s)	327, 560, 1130, 1143, 1387, 1858, 2760
BspQI	GCTCTTC	1 cut(s)	2019
BspT104I	TTCGAA	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	461
BspTNI	GGTCTC	2 cut(s)	1916, 2091
BsrDI	GCAATG	1 cut(s)	2960
BsrGI	TGTACA	2 cut(s)	354, 2773
BsrI	ACTGG	7 cut(s)	680, 726, 1381, 2308, 2887, 3046, 3174
BssECI	CCNNGG	8 cut(s)	841, 842, 869, 1085, 1517, 1518, 1669, 2373
BssNAI	GTATAC	2 cut(s)	1392, 2797
BssNI	GRCGYC	2 cut(s)	8, 713
BssSI	CACGAG	3 cut(s)	1600, 2777, 3035
BssT1I	CCWWGG	2 cut(s)	1085, 1669
Bst1107I	GTATAC	2 cut(s)	1392, 2797
Bst2BI	CACGAG	3 cut(s)	1600, 2777, 3035
Bst2UI	CCWGG	5 cut(s)	843, 870, 882, 1519, 1717
Bst4CI	ACNGT	9 cut(s)	507, 803, 837, 2110, 2196, 2219, 2684, 2724, 2920
Bst6I	CTCTTC	2 cut(s)	993, 2019
BstACI	GRCGYC	2 cut(s)	8, 713
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	2 cut(s)	749, 908
BstAUI	TGTACA	2 cut(s)	354, 2773
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	2902
BstDSI	CCRYGG	1 cut(s)	1085
BstENI	CCTNNNNNAGG	2 cut(s)	71, 314
BstF5I	GGATG	4 cut(s)	217, 982, 1372, 2280
BstFNI	CGCG	2 cut(s)	2900, 2925
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	3 cut(s)	274, 1926, 2925
BstMAI	GTCTC	7 cut(s)	390, 1150, 1916, 1943, 2091, 2774, 3099
BstNI	CCWGG	5 cut(s)	843, 870, 882, 1519, 1717
BstNSI	RCATGY	2 cut(s)	1451, 2457
BstSCI	CCNGG	7 cut(s)	194, 841, 868, 880, 938, 1517, 1715
BstSFI	CTRYAG	2 cut(s)	750, 2106
BstSLI	GKGCMC	2 cut(s)	1433, 1518
BstUI	CGCG	2 cut(s)	2900, 2925
BstV1I	GCAGC	7 cut(s)	280, 360, 596, 755, 852, 2945, 3010
BstV2I	GAAGAC	3 cut(s)	354, 2481, 2615
BstX2I	RGATCY	5 cut(s)	319, 1135, 1850, 2043, 2124
BstXI	CCANNNNNNTGG	2 cut(s)	973, 1993
BstYI	RGATCY	5 cut(s)	319, 1135, 1850, 2043, 2124
BstZ17I	GTATAC	2 cut(s)	1392, 2797
Bsu15I	ATCGAT	2 cut(s)	1266, 2538
BsuI	GTATCC	4 cut(s)	82, 113, 936, 1841
BsuRI	GGCC	7 cut(s)	452, 479, 885, 1352, 1516, 2206, 2586
BsuTUI	ATCGAT	2 cut(s)	1266, 2538
BtgI	CCRYGG	1 cut(s)	1085
BtsCI	GGATG	4 cut(s)	217, 982, 1372, 2280
BtsI	GCAGTG	1 cut(s)	3060
BtsIMutI	CAGTG	5 cut(s)	29, 733, 2055, 2720, 3060
BveI	ACCTGC	3 cut(s)	326, 2044, 2683
Cac8I	GCNNGC	1 cut(s)	2902
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	1405
CfoI	GCGC	3 cut(s)	274, 1926, 2925
Cfr13I	GGNCC	4 cut(s)	451, 657, 1514, 1515
ClaI	ATCGAT	2 cut(s)	1266, 2538
CseI	GACGC	2 cut(s)	16, 547
Csp6I	GTAC	6 cut(s)	355, 617, 683, 1160, 2223, 2774
CspCI	CAANNNNNGTGG	4 cut(s)	681, 716, 2244, 2279
CviQI	GTAC	6 cut(s)	355, 617, 683, 1160, 2223, 2774
EaeI	YGGCCR	1 cut(s)	2204
Eam1104I	CTCTTC	2 cut(s)	993, 2019
EarI	CTCTTC	2 cut(s)	993, 2019
Ecl136II	GAGCTC	2 cut(s)	2029, 2655
Eco130I	CCWWGG	2 cut(s)	1085, 1669
Eco147I	AGGCCT	1 cut(s)	2586
Eco24I	GRGCYC	5 cut(s)	959, 1172, 1518, 2031, 2657
Eco31I	GGTCTC	2 cut(s)	1916, 2091
Eco32I	GATATC	2 cut(s)	307, 2388
Eco47I	GGWCC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	273
Eco53kI	GAGCTC	2 cut(s)	2029, 2655
Eco88I	CYCGRG	2 cut(s)	158, 2374
EcoICRI	GAGCTC	2 cut(s)	2029, 2655
EcoNI	CCTNNNNNAGG	2 cut(s)	71, 314
EcoO109I	RGGNCCY	2 cut(s)	657, 1514
EcoRII	CCWGG	5 cut(s)	841, 868, 880, 1517, 1715
EcoRV	GATATC	2 cut(s)	307, 2388
EcoT14I	CCWWGG	2 cut(s)	1085, 1669
EcoT38I	GRGCYC	5 cut(s)	959, 1172, 1518, 2031, 2657
ErhI	CCWWGG	2 cut(s)	1085, 1669
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	3072
FbaI	TGATCA	2 cut(s)	54, 2289
FblI	GTMKAC	4 cut(s)	1391, 1813, 2796, 2895
Fnu4HI	GCNGC	9 cut(s)	294, 297, 374, 585, 744, 866, 2934, 3024, 3122
FokI	GGATG	4 cut(s)	224, 969, 1379, 2267
FriOI	GRGCYC	5 cut(s)	959, 1172, 1518, 2031, 2657
Fsp4HI	GCNGC	9 cut(s)	294, 297, 374, 585, 744, 866, 2934, 3024, 3122
FspBI	CTAG	9 cut(s)	311, 513, 969, 1007, 1017, 1053, 1730, 1956, 3014
FspI	TGCGCA	1 cut(s)	1925
GlaI	GCGC	3 cut(s)	273, 1925, 2924
GluI	GCNGC	9 cut(s)	294, 297, 374, 585, 744, 866, 2934, 3024, 3122
GsaI	CCCAGC	1 cut(s)	1542
GsuI	CTGGAG	3 cut(s)	2646, 3123, 3170
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	7 cut(s)	452, 479, 885, 1352, 1516, 2206, 2586
HapII	CCGG	2 cut(s)	195, 940
HgaI	GACGC	2 cut(s)	16, 547
HhaI	GCGC	3 cut(s)	274, 1926, 2925
Hin1I	GRCGYC	2 cut(s)	8, 713
Hin6I	GCGC	3 cut(s)	272, 1924, 2923
HinP1I	GCGC	3 cut(s)	272, 1924, 2923
HincII	GTYRAC	2 cut(s)	705, 2019
HindII	GTYRAC	2 cut(s)	705, 2019
HindIII	AAGCTT	4 cut(s)	101, 467, 1075, 2271
HpaI	GTTAAC	1 cut(s)	2019
HpaII	CCGG	2 cut(s)	195, 940
HphI	GGTGA	3 cut(s)	1250, 1352, 1751
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	9 cut(s)	507, 803, 837, 2110, 2196, 2219, 2684, 2724, 2920
HpyCH4IV	ACGT	2 cut(s)	713, 888
HpySE526I	ACGT	2 cut(s)	713, 888
Hsp92I	GRCGYC	2 cut(s)	8, 713
HspAI	GCGC	3 cut(s)	272, 1924, 2923
Ksp22I	TGATCA	2 cut(s)	54, 2289
KspAI	GTTAAC	1 cut(s)	2019
LguI	GCTCTTC	1 cut(s)	2019
LmnI	GCTCC	6 cut(s)	611, 1167, 1417, 1540, 2627, 2652
Lsp1109I	GCAGC	7 cut(s)	280, 360, 596, 755, 852, 2945, 3010
LweI	GCATC	9 cut(s)	1203, 1258, 1522, 1789, 1911, 2289, 2311, 2623, 2945
MaeI	CTAG	9 cut(s)	311, 513, 969, 1007, 1017, 1053, 1730, 1956, 3014
MaeII	ACGT	2 cut(s)	713, 888
MaeIII	GTNAC	5 cut(s)	1739, 2248, 2449, 2564, 2578
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	5 cut(s)	319, 1135, 1850, 2043, 2124
MhlI	GDGCHC	6 cut(s)	959, 1172, 1433, 1518, 2031, 2657
MlsI	TGGCCA	1 cut(s)	2206
MluNI	TGGCCA	1 cut(s)	2206
MlyI	GAGTC	3 cut(s)	2586, 2776, 3107
MmeI	TCCRAC	3 cut(s)	688, 991, 2476
Mox20I	TGGCCA	1 cut(s)	2206
MroXI	GAANNNNTTC	4 cut(s)	140, 236, 2684, 2762
MscI	TGGCCA	1 cut(s)	2206
MslI	CAYNNNNRTG	4 cut(s)	206, 971, 1556, 2285
Msp20I	TGGCCA	1 cut(s)	2206
MspA1I	CMGCKG	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	2 cut(s)	195, 940
MspR9I	CCNGG	7 cut(s)	196, 843, 870, 882, 940, 1519, 1717
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	2 cut(s)	902, 2822
MvaI	CCWGG	5 cut(s)	843, 870, 882, 1519, 1717
MvnI	CGCG	2 cut(s)	2900, 2925
NciI	CCSGG	2 cut(s)	196, 940
NcoI	CCATGG	1 cut(s)	1085
NmeAIII	GCCGAG	1 cut(s)	2056
NmuCI	GTSAC	3 cut(s)	1739, 2564, 2578
NsbI	TGCGCA	1 cut(s)	1925
NspI	RCATGY	2 cut(s)	1451, 2457
NspV	TTCGAA	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	158
PagI	TCATGA	1 cut(s)	1405
PasI	CCCWGGG	2 cut(s)	842, 1518
PceI	AGGCCT	1 cut(s)	2586
PciI	ACATGT	2 cut(s)	1447, 2453
PciSI	GCTCTTC	1 cut(s)	2019
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 20, 2775
PctI	GAATGC	2 cut(s)	902, 2822
PdmI	GAANNNNTTC	4 cut(s)	140, 236, 2684, 2762
PkrI	GCNGC	9 cut(s)	295, 298, 375, 586, 745, 867, 2935, 3025, 3123
PleI	GAGTC	3 cut(s)	2585, 2776, 3106
PpsI	GAGTC	3 cut(s)	2585, 2776, 3106
PpuMI	RGGWCCY	1 cut(s)	657
PscI	ACATGT	2 cut(s)	1447, 2453
Psp124BI	GAGCTC	2 cut(s)	2031, 2657
Psp5II	RGGWCCY	1 cut(s)	657
Psp6I	CCWGG	5 cut(s)	841, 868, 880, 1517, 1715
PspFI	CCCAGC	1 cut(s)	1538
PspGI	CCWGG	5 cut(s)	841, 868, 880, 1517, 1715
PspOMI	GGGCCC	1 cut(s)	1514
PspPI	GGNCC	4 cut(s)	451, 657, 1514, 1515
PspPPI	RGGWCCY	1 cut(s)	657
PspXI	VCTCGAGB	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	5 cut(s)	319, 1135, 1850, 2043, 2124
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	6 cut(s)	356, 618, 684, 1161, 2224, 2775
RsaNI	GTAC	6 cut(s)	355, 617, 683, 1160, 2223, 2774
RseI	CAYNNNNRTG	4 cut(s)	206, 971, 1556, 2285
SacI	GAGCTC	2 cut(s)	2031, 2657
SapI	GCTCTTC	1 cut(s)	2019
SatI	GCNGC	9 cut(s)	294, 297, 374, 585, 744, 866, 2934, 3024, 3122
Sau96I	GGNCC	4 cut(s)	451, 657, 1514, 1515
SchI	GAGTC	3 cut(s)	2586, 2776, 3107
ScrFI	CCNGG	7 cut(s)	196, 843, 870, 882, 940, 1519, 1717
SduI	GDGCHC	6 cut(s)	959, 1172, 1433, 1518, 2031, 2657
SfaNI	GCATC	9 cut(s)	1203, 1258, 1522, 1789, 1911, 2289, 2311, 2623, 2945
SfcI	CTRYAG	2 cut(s)	750, 2106
Sfr274I	CTCGAG	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	657
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	4 cut(s)	206, 971, 1556, 2285
SmlI	CTYRAG	6 cut(s)	158, 461, 2128, 2558, 2806, 3095
SmoI	CTYRAG	6 cut(s)	158, 461, 2128, 2558, 2806, 3095
SpeI	ACTAGT	1 cut(s)	1016
SseBI	AGGCCT	1 cut(s)	2586
SsiI	CCGC	5 cut(s)	220, 297, 1338, 1834, 3122
SspMI	CTAG	9 cut(s)	311, 513, 969, 1007, 1017, 1053, 1730, 1956, 3014
SstI	GAGCTC	2 cut(s)	2031, 2657
StuI	AGGCCT	1 cut(s)	2586
StyD4I	CCNGG	7 cut(s)	194, 841, 868, 880, 938, 1517, 1715
StyI	CCWWGG	2 cut(s)	1085, 1669
TaaI	ACNGT	9 cut(s)	507, 803, 837, 2110, 2196, 2219, 2684, 2724, 2920
TaiI	ACGT	2 cut(s)	716, 891
TaqII	GACCGA	1 cut(s)	2073
TatI	WGTACW	4 cut(s)	354, 616, 1159, 2773
TauI	GCSGC	2 cut(s)	299, 3124
TscAI	CASTG	5 cut(s)	36, 733, 2062, 2727, 3060
TseFI	GTSAC	3 cut(s)	1739, 2564, 2578
TseI	GCWGC	7 cut(s)	293, 373, 584, 743, 865, 2933, 3023
Tsp45I	GTSAC	3 cut(s)	1739, 2564, 2578
TspGWI	ACGGA	3 cut(s)	482, 550, 2522
TspRI	CASTG	5 cut(s)	36, 733, 2062, 2727, 3060
Vha464I	CTTAAG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	657
XagI	CCTNNNNNAGG	2 cut(s)	71, 314
XapI	RAATTY	2 cut(s)	246, 2258
XbaI	TCTAGA	1 cut(s)	1955
XceI	RCATGY	2 cut(s)	1451, 2457
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	4 cut(s)	1391, 1813, 2796, 2895
XmnI	GAANNNNTTC	4 cut(s)	140, 236, 2684, 2762
XspI	CTAG	9 cut(s)	311, 513, 969, 1007, 1017, 1053, 1730, 1956, 3014
ZraI	GACGTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.