Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Reverse (-)

5414817 .. 5421033

Gene Structure 6217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3396 bp

ATGTCTTCTCTTAGTAGAGAGCTCGTTTTCTTGATCTTACAGTTTCTCGATGAAGAGAAGTTTAAAGAGACTGTTCACAAGCTTGAACAAGAATCTGGGTTTTTCTTCAATATGAAGTATTTTGAGGATGAGGTTCACAATGGAAATTGGGATGAGGTTGAGAAGTATCTCTCTGGTTTCACTAAAGTAGATGATAATAGATACTCTATGAAGATATTCTTCGAGATAAGAAAGCAGAAGTATCTCGAGGCTTTGGATAAGCATGATCGTCCCAAGGCTGTGGATATACTAGTGAAGGATTTGAAAGTGTTTTCAACTTTTAATGAGGAGCTTTTCAAGGAAATAACACAGCTCTTGACATTGGAGAACTTCCGGGAGAATGAACAGTTATCCAAGTATGGGGACACCAAGTCTGCAAGAGCGATCATGTTGGTGGAACTCAAAAAGCTGATTGAGGCGAATCCTTTATTCCGTGATAAATTGCAGTTCCCTACTCTTAGAAATTCAAGGCTGAGGACTTTGATCAACCAGAGCTTAAATTGGCAACACCAGCTTTGTAAAAATCCAAGGCCAAATCCAGATATCAAGACTCTTTTTGTGGATCACTCTTGTGGCCCTCCAAATGGCGCACGAGCTCCATCTCCTGTGAACAATCCACTGCTTGGAGGGATACCAAAGGCTGGAGGATTTCCTCCTTTAGGCGCACACGGGCCATTTCAACCAACGGCGTCACCTGTTCCAACACCTCTTGCTGGTTGGATGTCTAGTCCATCCTCTGTCCCACATCCAGCTGTCTCAGCAGGAGCCATTGCACTTGGTGGTCCATCAATCCCAGCGGCGTTGAAGCACCCGAGAACTCCTCCAACTAATGCTTCTTTAGACTACCCGTCAGCAGATTCTGAACATGTCTCAAAAAGAACAAGACCAATGGGAATCTCTGACGAGGTGAATCTAGGCGTGAACATGTTACCGATGTCATTTTCAGGGCAGGCCCATGGTCATTCTCCGGCTTTCAAAGCACCTGACGACTTGCCCAAGACAGTTGCGAGAACTTTGAGTCAGGGCTCATCTCCCATGAGCATGGATTTCCATCCAATTAAACAGACCCTGCTTCTAGTTGGTACAAATGTAGGTGATATCGGGCTGTGGGAAGTTGGTTCTCGCGAAAGATTAGTACAGAAGACGTTCAAAGTCTGGGATTTGAGTAAATGTTCAATGCCCTTGCAGGCTGCTCTGGTGAAAGAACCTGTCGTTTCTGTCAACCGTGTGATATGGAGCCCTGACGGTTCCTTGTTTGGAGTTGCTTACTCGAGACATATTGTACAACTATACTCTTATCACGGAGGTGAAGACATGAGGCAACACCTTGAGATTGATGCTCATGTTGGTGGTGTGAATGATATTTCCTTCTCGACTCCAAACAAGCAACTATGTGTAATAACTTGTGGTGATGACAAAACCATCAAGGTTTGGGACGCTGCAACAGGTGTCAAAAGGCATACTTTTGAAGGCCATGAAGCTCCTGTTTATTCCGTTTGTCCTCATTACAAGGAAAACATTCAGTTCATATTTTCAACAGCTCTTGATGGGAAAATTAAGGCTTGGTTGTATGATAATATGGGTTCCCGAGTTGACTATGATGCACCTGGTCGCTGGTGTACTACAATGGCTTATAGTGCCGATGGTACTAGGCTATTCTCTTGTGGGACGAGTAAAGATGGAGAGTCTTTCATTGTTGAGTGGAATGAAAGCGAAGGAGCTGTTAAAAGAACTTATCAAGGATTCCACAAGCGTTCTCTAGGTGTTGTGCAGTTTGATACAACTAAAAACCGTTATCTAGCTGCGGGTGATGATTTCTCCATCAAGTTCTGGGATATGGACGCTGTACAGCTTTTAACTGCCATTGATGGCGATGGAGGCCTCCAGGCAAGCCCGCGTATCCGGTTCAACAAGGAAGGCTCTCTCCTGGCCGTGTCTGGCAACGAGAATGTGATCAAGATTATGGCAAACTCAGATGGTCTAAGGCTATTGCACACTTTTGAGAACATATCATCTGAATCCTCCAAGCCTGCAATAAACAGCATAGCAGCGGCAGCGGCAGCTGCTGCAACAAGTGCTGGTCACGCAGATCGATCAGCCAATGTAGTTTCCATCCAAGGAATGAATGGAGATTCGCGGAATATGGTGGATGTGAAGCCAGTGATCACAGAAGAATCAAATGATAAGTCTAAGATATGGAAGCTTACTGAAGTCAGCGAGCCTTCTCAATGCAGGTCACTGAGACTCCCTGAGAATCTGAGAGTAGCCAAGATATCAAGATTGATTTTCACGAATTCGGGAAATGCTATTTTGGCTCTGGCATCAAACGCAATTCATCTTCTATGGAAATGGCAGCGGAATGAGCGCAACGCAACTGGAAAGGCGACAGCTTCTTTACCGCCTCAGCAGTGGCAACCAGCTAGTGGGATCCTCATGACTAACGATGTTGCTGAAACCAATCCCGAGGAAGCTGTACCTTGTTTTGCTTTATCCAAGAATGATTCATATGTAATGTCAGCCTCCGGAGGAAAGATATCCTTATTTAACATGATGACGTTTAAGACAATGGCGACTTTCATGCCCCCACCACCGGCTGCTACTTTTCTTGCTTTTCATCCTCAAGACAACAATATCATCGCTATTGGGATGGATGATAGCACGATTCAGATTTATAATGTCCGTGTTGATGAGGTGAAGAGTAAGCTTAAAGGTCATTCAAAGAGAATAACTGGTCTTGCCTTCTCCAACGTATTAAACGTGTTGGTTTCGTCTGGAGCAGATGCACAGCTTTGTGTTTGGAACACAGATGGATGGGAAAAGCAGAGAAGCAAGGTTTTGCCACTTCCACAGGGAAGACCAAACAGTGCACCTTCAGATACGCGTGTTCAGTTCCATCAAGATCAAGCTCACTTCCTCGTTGTGCACGAGACGCAACTTGCTATATACGAAACTACCAAGCTCGAATGCATGAAACAGTGGGCTGTTCGAGAATCATTAGCTCCAATCACTCATGCCACATTCTCATGCGATAGCCAATTGGTCTACGCGAGTTTTATGGATGCAACAGTTTGTGTATTTAGCTCTGCAAATCTACGGCTGCGTTGCCGGGTCAACCCTTCTGCGTATCTACCAGCTAGTCTCAGCAATTCAAACGTACATCCACTAGTGATTGCTGCACATCCGCAAGAACCAAACATGTTTGCAGTTGGTCTCTCAGACGGGGGAGTGCACATATTCGAACCGCTCGAGTCTGAAGGTAAATGGGGAGTCGCTCCACCGGCTGAGAACGGGTCGGCTAGCGGTGCACCAACTGCACCTTCCGTTGGAGCCTCTGCATCTGATCAGCCTCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

1131

Amino Acids

124.3

Weight (kDa)

6.8

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	6.7e-13	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	4.9e-64	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	2.4e-24	TOPLESS, zinc finger domain
Beta-prop_THOC3	PF25174	393 - 512	6.4e-14	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	396 - 571	2.5e-15	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	413 - 572	1.2e-09	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	415 - 569	3.8e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	419 - 676	2.5e-26	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	419 - 630	2.4e-22	WDR5 beta-propeller domain
WDR55	PF24796	420 - 535	3e-06	WDR55
WD40_WDHD1_1st	PF24817	430 - 539	1.3e-11	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	456 - 634	6.9e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	473 - 630	6.1e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	478 - 684	9.7e-13	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	528 - 637	5.7e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	554 - 672	3.5e-06	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	830 - 955	1.7e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	832 - 947	4e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	833 - 949	3.2e-15	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	833 - 951	1.2e-11	CDC20/Fizzy WD40 domain
WDR55	PF24796	834 - 948	4.5e-06	WDR55
WD40_WDHD1_1st	PF24817	835 - 1043	2.9e-17	WDHD1 first WD40 domain
WD40_Prp19	PF24814	835 - 1033	2.9e-16	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	835 - 1042	1.4e-18	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	838 - 1047	6.4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	839 - 1037	4.6e-12	WDR3 second beta-propeller domain
Beta-prop_IFT140_1st	PF23383	851 - 950	1.7e-08	IFT140 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	852 - 947	1e-09	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	856 - 958	9.6e-08	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2712
Acc36I	ACCTGC	1 cut(s)	2262
AccB7I	CCANNNNNTGG	3 cut(s)	662, 680, 2462
AccBSI	CCGCTC	1 cut(s)	3283
AccI	GTMKAC	1 cut(s)	3081
AccII	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
AccIII	TCCGGA	1 cut(s)	2561
AclWI	GGATC	3 cut(s)	609, 2461, 2474
AcoI	YGGCCR	1 cut(s)	1968
AcsI	RAATTY	2 cut(s)	502, 2332
AcuI	CTGAAG	3 cut(s)	2268, 2895, 3312
AcyI	GRCGYC	1 cut(s)	728
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	8 cut(s)	1123, 1176, 1323, 1660, 1687, 1887, 2514, 3195
AfiI	CCNNNNNNNGG	9 cut(s)	399, 623, 662, 680, 698, 752, 2462, 2629, 3362
AflIII	ACRYGT	5 cut(s)	904, 963, 2796, 2918, 3234
AhdI	GACNNNNNGTC	2 cut(s)	409, 886
AhlI	ACTAGT	2 cut(s)	289, 3202
AjnI	CCWGG	3 cut(s)	1645, 1923, 1965
AjuI	GAANNNNNNNTTGG	4 cut(s)	856, 888, 3340, 3372
AleI	CACNNNNGTG	2 cut(s)	609, 1344
Alw21I	GWGCWC	6 cut(s)	24, 637, 2908, 2964, 3270, 3346
Alw26I	GTCTC	8 cut(s)	62, 799, 913, 1306, 2275, 2960, 3182, 3254
Alw44I	GTGCAC	4 cut(s)	2904, 2960, 3266, 3342
AlwI	GGATC	3 cut(s)	609, 2461, 2474
AlwNI	CAGNNNCTG	3 cut(s)	899, 1108, 2105
Ama87I	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
Aor13HI	TCCGGA	1 cut(s)	2561
AoxI	GGCC	7 cut(s)	569, 613, 710, 990, 1510, 1918, 1968
ApaLI	GTGCAC	4 cut(s)	2904, 2960, 3266, 3342
ApoI	RAATTY	2 cut(s)	502, 2332
ArsI	GACNNNNNNTTYG	2 cut(s)	2210, 2242
Asp700I	GAANNNNTTC	3 cut(s)	215, 1184, 1557
AspLEI	GCGC	3 cut(s)	629, 704, 2406
AspS9I	GGNCC	4 cut(s)	614, 710, 821, 991
AsuC2I	CCSGG	2 cut(s)	374, 3146
AsuHPI	GGTGA	8 cut(s)	723, 958, 1145, 1249, 1358, 1460, 1859, 2743
AsuII	TTCGAA	1 cut(s)	3276
AsuNHI	GCTAGC	1 cut(s)	3335
AvaI	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	4 cut(s)	2908, 2964, 3270, 3346
BaeI	ACNNNNGTAYC	4 cut(s)	1113, 1146, 2907, 2940
BamHI	GGATCC	1 cut(s)	2466
BanII	GRGCYC	4 cut(s)	24, 637, 1067, 1280
BauI	CACGAG	2 cut(s)	630, 2963
BbsI	GAAGAC	3 cut(s)	1187, 1356, 2899
Bbv12I	GWGCWC	6 cut(s)	24, 637, 2908, 2964, 3270, 3346
BbvCI	CCTCAGC	2 cut(s)	512, 2442
BceAI	ACGGC	3 cut(s)	741, 1955, 3149
BcgI	CGANNNNNNTGC	2 cut(s)	2599, 2633
BciT130I	CCWGG	3 cut(s)	1647, 1925, 1967
BciVI	GTATCC	2 cut(s)	663, 1949
BclI	TGATCA	4 cut(s)	522, 1992, 2202, 3379
BcnI	CCSGG	2 cut(s)	374, 3146
BcoDI	GTCTC	8 cut(s)	62, 799, 913, 1306, 2275, 2960, 3182, 3254
BcuI	ACTAGT	2 cut(s)	289, 3202
BfuAI	ACCTGC	1 cut(s)	2262
BfuI	GTATCC	2 cut(s)	663, 1949
Bme1390I	CCNGG	5 cut(s)	374, 1647, 1925, 1967, 3146
Bme18I	GGWCC	1 cut(s)	821
BmeRI	GACNNNNNGTC	2 cut(s)	409, 886
BmeT110I	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
BmgT120I	GGNCC	4 cut(s)	614, 710, 821, 991
BmiI	GGNNCC	6 cut(s)	805, 1277, 1288, 1624, 2468, 3367
BmrFI	CCNGG	5 cut(s)	374, 1647, 1925, 1967, 3146
BmsI	GCATC	6 cut(s)	1366, 1630, 2369, 2809, 3088, 3383
BmtI	GCTAGC	1 cut(s)	3339
BpiI	GAAGAC	3 cut(s)	1187, 1356, 2899
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
BpmI	CTGGAG	3 cut(s)	702, 1907, 2832
Bpu10I	CCTNAGC	2 cut(s)	512, 2442
Bpu14I	TTCGAA	1 cut(s)	3276
BpuEI	CTTGAG	2 cut(s)	1388, 2643
BpuMI	CCSGG	2 cut(s)	374, 3146
Bsa29I	ATCGAT	1 cut(s)	2131
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaHI	GRCGYC	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	3254
BsaJI	CCNNGG	5 cut(s)	273, 566, 994, 2155, 2502
BsaWI	WCCGGW	2 cut(s)	1941, 2561
BsaXI	ACNNNNNCTCC	2 cut(s)	2268, 2298
Bsc4I	CCNNNNNNNGG	9 cut(s)	399, 623, 662, 680, 698, 752, 2462, 2629, 3362
Bse118I	RCCGGY	2 cut(s)	2629, 3316
Bse1I	ACTGG	3 cut(s)	2198, 2419, 2773
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	2561
BseBI	CCWGG	3 cut(s)	1647, 1925, 1967
BseCI	ATCGAT	1 cut(s)	2131
BseDI	CCNNGG	5 cut(s)	273, 566, 994, 2155, 2502
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	9 cut(s)	399, 623, 662, 680, 698, 752, 2462, 2629, 3362
BseMI	GCAATG	1 cut(s)	807
BseNI	ACTGG	3 cut(s)	2198, 2419, 2773
BseRI	GAGGAG	2 cut(s)	341, 849
BseSI	GKGCMC	4 cut(s)	2908, 2964, 3270, 3346
BseYI	CCCAGC	1 cut(s)	832
BsgI	GTGCAG	3 cut(s)	1829, 3198, 3336
Bsh1236I	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
BshFI	GGCC	7 cut(s)	571, 615, 712, 992, 1512, 1920, 1970
BshVI	ATCGAT	1 cut(s)	2131
BsiHKAI	GWGCWC	6 cut(s)	24, 637, 2908, 2964, 3270, 3346
BsiHKCI	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
BsiSI	CCGG	7 cut(s)	373, 1007, 1942, 2562, 2630, 3145, 3317
BslFI	GGGAC	5 cut(s)	255, 416, 764, 1487, 1720
BslI	CCNNNNNNNGG	9 cut(s)	399, 623, 662, 680, 698, 752, 2462, 2629, 3362
BsmAI	GTCTC	8 cut(s)	62, 799, 913, 1306, 2275, 2960, 3182, 3254
BsmBI	CGTCTC	1 cut(s)	2960
BsmFI	GGGAC	5 cut(s)	255, 416, 764, 1487, 1720
BsmI	GAATGC	1 cut(s)	3008
BsnI	GGCC	7 cut(s)	571, 615, 712, 992, 1512, 1920, 1970
Bso31I	GGTCTC	1 cut(s)	3254
BsoBI	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
Bsp119I	TTCGAA	1 cut(s)	3276
Bsp1286I	GDGCHC	8 cut(s)	24, 637, 1067, 1280, 2908, 2964, 3270, 3346
Bsp13I	TCCGGA	1 cut(s)	2561
Bsp1407I	TGTACA	2 cut(s)	1321, 1885
Bsp19I	CCATGG	1 cut(s)	994
Bsp68I	TCGCGA	1 cut(s)	1164
BspANI	GGCC	7 cut(s)	571, 615, 712, 992, 1512, 1920, 1970
BspDI	ATCGAT	1 cut(s)	2131
BspEI	TCCGGA	1 cut(s)	2561
BspFNI	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
BspHI	TCATGA	1 cut(s)	2472
BspLI	GGNNCC	6 cut(s)	805, 1277, 1288, 1624, 2468, 3367
BspMI	ACCTGC	1 cut(s)	2262
BspOI	GCTAGC	1 cut(s)	3339
BspPI	GGATC	3 cut(s)	609, 2461, 2474
BspT104I	TTCGAA	1 cut(s)	3276
BspTNI	GGTCTC	1 cut(s)	3254
BsrBI	CCGCTC	1 cut(s)	3283
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	2 cut(s)	2629, 3316
BsrGI	TGTACA	2 cut(s)	1321, 1885
BsrI	ACTGG	3 cut(s)	2198, 2419, 2773
BssAI	RCCGGY	2 cut(s)	2629, 3316
BssECI	CCNNGG	5 cut(s)	273, 566, 994, 2155, 2502
BssNI	GRCGYC	1 cut(s)	728
BssSI	CACGAG	2 cut(s)	630, 2963
BssT1I	CCWWGG	4 cut(s)	273, 566, 994, 2155
Bst2BI	CACGAG	2 cut(s)	630, 2963
Bst2UI	CCWGG	3 cut(s)	1647, 1925, 1967
Bst6I	CTCTTC	2 cut(s)	48, 2729
BstACI	GRCGYC	1 cut(s)	728
BstAPI	GCANNNNNTGC	3 cut(s)	2105, 2114, 3350
BstAUI	TGTACA	2 cut(s)	1321, 1885
BstBI	TTCGAA	1 cut(s)	3276
BstC8I	GCNNGC	7 cut(s)	990, 1227, 1930, 1934, 2070, 2258, 3337
BstDSI	CCRYGG	1 cut(s)	994
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstFNI	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
BstHHI	GCGC	3 cut(s)	629, 704, 2406
BstMAI	GTCTC	8 cut(s)	62, 799, 913, 1306, 2275, 2960, 3182, 3254
BstNI	CCWGG	3 cut(s)	1647, 1925, 1967
BstNSI	RCATGY	3 cut(s)	908, 967, 3238
BstSCI	CCNGG	5 cut(s)	372, 1645, 1923, 1965, 3144
BstSLI	GKGCMC	4 cut(s)	2908, 2964, 3270, 3346
BstUI	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
BstV2I	GAAGAC	3 cut(s)	1187, 1356, 2899
BstX2I	RGATCY	1 cut(s)	2466
BstXI	CCANNNNNNTGG	2 cut(s)	280, 1081
BstYI	RGATCY	1 cut(s)	2466
Bsu15I	ATCGAT	1 cut(s)	2131
BsuI	GTATCC	2 cut(s)	663, 1949
BsuRI	GGCC	7 cut(s)	571, 615, 712, 992, 1512, 1920, 1970
BsuTUI	ATCGAT	1 cut(s)	2131
BtgI	CCRYGG	1 cut(s)	994
BtgZI	GCGATG	2 cut(s)	1926, 2659
BtsI	GCAGTG	2 cut(s)	656, 2453
BtsIMutI	CAGTG	6 cut(s)	656, 2205, 2276, 2453, 2908, 3020
BtuMI	TCGCGA	1 cut(s)	1164
BveI	ACCTGC	1 cut(s)	2262
Cac8I	GCNNGC	7 cut(s)	990, 1227, 1930, 1934, 2070, 2258, 3337
CaiI	CAGNNNCTG	3 cut(s)	899, 1108, 2105
CciI	TCATGA	1 cut(s)	2472
CfoI	GCGC	3 cut(s)	629, 704, 2406
Cfr10I	RCCGGY	2 cut(s)	2629, 3316
Cfr13I	GGNCC	4 cut(s)	614, 710, 821, 991
ClaI	ATCGAT	1 cut(s)	2131
CseI	GACGC	4 cut(s)	717, 1484, 1889, 2977
CsiI	ACCWGGT	1 cut(s)	1645
Csp6I	GTAC	8 cut(s)	1122, 1175, 1322, 1659, 1686, 1886, 2513, 3194
CviQI	GTAC	8 cut(s)	1122, 1175, 1322, 1659, 1686, 1886, 2513, 3194
DraI	TTTAAA	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	818
DriI	GACNNNNNGTC	2 cut(s)	409, 886
EaeI	YGGCCR	1 cut(s)	1968
Eam1104I	CTCTTC	2 cut(s)	48, 2729
Eam1105I	GACNNNNNGTC	2 cut(s)	409, 886
EarI	CTCTTC	2 cut(s)	48, 2729
Ecl136II	GAGCTC	2 cut(s)	22, 635
Eco130I	CCWWGG	4 cut(s)	273, 566, 994, 2155
Eco147I	AGGCCT	1 cut(s)	1920
Eco24I	GRGCYC	4 cut(s)	24, 637, 1067, 1280
Eco31I	GGTCTC	1 cut(s)	3254
Eco32I	GATATC	4 cut(s)	583, 1138, 2313, 2574
Eco47I	GGWCC	1 cut(s)	821
Eco53kI	GAGCTC	2 cut(s)	22, 635
Eco57I	CTGAAG	3 cut(s)	2268, 2895, 3312
Eco88I	CYCGRG	6 cut(s)	245, 850, 1309, 1626, 2501, 3284
EcoICRI	GAGCTC	2 cut(s)	22, 635
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	2332
EcoRII	CCWGG	3 cut(s)	1645, 1923, 1965
EcoRV	GATATC	4 cut(s)	583, 1138, 2313, 2574
EcoT14I	CCWWGG	4 cut(s)	273, 566, 994, 2155
EcoT22I	ATGCAT	1 cut(s)	3008
EcoT38I	GRGCYC	4 cut(s)	24, 637, 1067, 1280
ErhI	CCWWGG	4 cut(s)	273, 566, 994, 2155
Esp3I	CGTCTC	1 cut(s)	2960
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 1486, 1518, 2561, 2593
FaqI	GGGAC	5 cut(s)	255, 416, 764, 1487, 1720
FauI	CCCGC	2 cut(s)	1837, 1941
FauNDI	CATATG	1 cut(s)	2545
FbaI	TGATCA	4 cut(s)	522, 1992, 2202, 3379
FblI	GTMKAC	1 cut(s)	3081
FriOI	GRGCYC	4 cut(s)	24, 637, 1067, 1280
GlaI	GCGC	3 cut(s)	628, 703, 2405
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	3 cut(s)	702, 1907, 2832
HaeIII	GGCC	7 cut(s)	571, 615, 712, 992, 1512, 1920, 1970
HapII	CCGG	7 cut(s)	373, 1007, 1942, 2562, 2630, 3145, 3317
HgaI	GACGC	4 cut(s)	717, 1484, 1889, 2977
HhaI	GCGC	3 cut(s)	629, 704, 2406
Hin1I	GRCGYC	1 cut(s)	728
Hin6I	GCGC	3 cut(s)	627, 702, 2404
HinP1I	GCGC	3 cut(s)	627, 702, 2404
HincII	GTYRAC	3 cut(s)	1261, 1633, 3151
HindII	GTYRAC	3 cut(s)	1261, 1633, 3151
HindIII	AAGCTT	3 cut(s)	80, 2240, 2741
HpaII	CCGG	7 cut(s)	373, 1007, 1942, 2562, 2630, 3145, 3317
HphI	GGTGA	8 cut(s)	723, 958, 1145, 1249, 1358, 1460, 1859, 2743
HpyCH4IV	ACGT	5 cut(s)	1184, 2594, 2787, 2796, 3192
HpySE526I	ACGT	5 cut(s)	1184, 2594, 2787, 2796, 3192
Hsp92I	GRCGYC	1 cut(s)	728
HspAI	GCGC	3 cut(s)	627, 702, 2404
Kpn2I	TCCGGA	1 cut(s)	2561
Ksp22I	TGATCA	4 cut(s)	522, 1992, 2202, 3379
LweI	GCATC	6 cut(s)	1366, 1630, 2369, 2809, 3088, 3383
MabI	ACCWGGT	1 cut(s)	1645
MaeII	ACGT	5 cut(s)	1184, 2594, 2787, 2796, 3192
MaeIII	GTNAC	4 cut(s)	729, 966, 2120, 2274
MbiI	CCGCTC	1 cut(s)	3283
MfeI	CAATTG	1 cut(s)	3074
MflI	RGATCY	1 cut(s)	2466
MhlI	GDGCHC	8 cut(s)	24, 637, 1067, 1280, 2908, 2964, 3270, 3346
MluI	ACGCGT	1 cut(s)	2918
MlyI	GAGTC	7 cut(s)	583, 1066, 1408, 1733, 2277, 3296, 3315
MmeI	TCCRAC	5 cut(s)	737, 764, 887, 2808, 3343
Mph1103I	ATGCAT	1 cut(s)	3008
MroI	TCCGGA	1 cut(s)	2561
MroXI	GAANNNNTTC	3 cut(s)	215, 1184, 1557
MslI	CAYNNNNRTG	6 cut(s)	431, 609, 1079, 1344, 1386, 3061
MspA1I	CMGCKG	6 cut(s)	791, 836, 2090, 2096, 2102, 2395
MspI	CCGG	7 cut(s)	373, 1007, 1942, 2562, 2630, 3145, 3317
MspR9I	CCNGG	5 cut(s)	374, 1647, 1925, 1967, 3146
MunI	CAATTG	1 cut(s)	3074
Mva1269I	GAATGC	1 cut(s)	3008
MvaI	CCWGG	3 cut(s)	1647, 1925, 1967
MvnI	CGCG	5 cut(s)	1164, 1936, 2176, 2920, 3086
NciI	CCSGG	2 cut(s)	374, 3146
NcoI	CCATGG	1 cut(s)	994
NdeI	CATATG	1 cut(s)	2545
NheI	GCTAGC	1 cut(s)	3335
NlaIV	GGNNCC	6 cut(s)	805, 1277, 1288, 1624, 2468, 3367
NmuCI	GTSAC	3 cut(s)	729, 2120, 2274
NruI	TCGCGA	1 cut(s)	1164
NsiI	ATGCAT	1 cut(s)	3008
NspI	RCATGY	3 cut(s)	908, 967, 3238
NspV	TTCGAA	1 cut(s)	3276
OliI	CACNNNNGTG	2 cut(s)	609, 1344
PaeR7I	CTCGAG	3 cut(s)	245, 1309, 3284
PagI	TCATGA	1 cut(s)	2472
PceI	AGGCCT	1 cut(s)	1920
PciI	ACATGT	3 cut(s)	904, 963, 3234
PcsI	WCGNNNNNNNCGW	3 cut(s)	2793, 2961, 3282
PctI	GAATGC	1 cut(s)	3008
PdmI	GAANNNNTTC	3 cut(s)	215, 1184, 1557
PflMI	CCANNNNNTGG	3 cut(s)	662, 680, 2462
PfoI	TCCNGGA	1 cut(s)	372
PleI	GAGTC	7 cut(s)	583, 1065, 1408, 1732, 2277, 3295, 3314
PpsI	GAGTC	7 cut(s)	583, 1065, 1408, 1732, 2277, 3295, 3314
PscI	ACATGT	3 cut(s)	904, 963, 3234
PsiI	TTATAA	1 cut(s)	2712
Psp124BI	GAGCTC	2 cut(s)	24, 637
Psp6I	CCWGG	3 cut(s)	1645, 1923, 1965
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	3 cut(s)	1645, 1923, 1965
PspN4I	GGNNCC	6 cut(s)	805, 1277, 1288, 1624, 2468, 3367
PspPI	GGNCC	4 cut(s)	614, 710, 821, 991
PspXI	VCTCGAGB	1 cut(s)	3284
PstNI	CAGNNNCTG	3 cut(s)	899, 1108, 2105
PsuI	RGATCY	1 cut(s)	2466
PvuII	CAGCTG	2 cut(s)	791, 2102
RruI	TCGCGA	1 cut(s)	1164
RsaI	GTAC	8 cut(s)	1123, 1176, 1323, 1660, 1687, 1887, 2514, 3195
RsaNI	GTAC	8 cut(s)	1122, 1175, 1322, 1659, 1686, 1886, 2513, 3194
RseI	CAYNNNNRTG	6 cut(s)	431, 609, 1079, 1344, 1386, 3061
SacI	GAGCTC	2 cut(s)	24, 637
Sau96I	GGNCC	4 cut(s)	614, 710, 821, 991
SchI	GAGTC	7 cut(s)	583, 1066, 1408, 1733, 2277, 3296, 3315
ScrFI	CCNGG	5 cut(s)	374, 1647, 1925, 1967, 3146
SduI	GDGCHC	8 cut(s)	24, 637, 1067, 1280, 2908, 2964, 3270, 3346
SexAI	ACCWGGT	1 cut(s)	1645
SfaNI	GCATC	6 cut(s)	1366, 1630, 2369, 2809, 3088, 3383
Sfr274I	CTCGAG	3 cut(s)	245, 1309, 3284
SfuI	TTCGAA	1 cut(s)	3276
SinI	GGWCC	1 cut(s)	821
SlaI	CTCGAG	3 cut(s)	245, 1309, 3284
SmiMI	CAYNNNNRTG	6 cut(s)	431, 609, 1079, 1344, 1386, 3061
SmlI	CTYRAG	5 cut(s)	245, 1309, 1367, 2658, 3284
SmoI	CTYRAG	5 cut(s)	245, 1309, 1367, 2658, 3284
SpeI	ACTAGT	2 cut(s)	289, 3202
SseBI	AGGCCT	1 cut(s)	1920
SstI	GAGCTC	2 cut(s)	24, 637
StuI	AGGCCT	1 cut(s)	1920
StyD4I	CCNGG	5 cut(s)	372, 1645, 1923, 1965, 3144
StyI	CCWWGG	4 cut(s)	273, 566, 994, 2155
TaiI	ACGT	5 cut(s)	1187, 2597, 2790, 2799, 3195
TatI	WGTACW	4 cut(s)	1174, 1321, 1658, 1885
TauI	GCSGC	3 cut(s)	839, 2093, 2099
TscAI	CASTG	6 cut(s)	663, 2205, 2283, 2453, 2908, 3020
TseFI	GTSAC	3 cut(s)	729, 2120, 2274
Tsp45I	GTSAC	3 cut(s)	729, 2120, 2274
TspGWI	ACGGA	5 cut(s)	461, 1356, 1522, 2708, 3349
TspRI	CASTG	6 cut(s)	663, 2205, 2283, 2453, 2908, 3020
Van91I	CCANNNNNTGG	3 cut(s)	662, 680, 2462
VneI	GTGCAC	4 cut(s)	2904, 2960, 3266, 3342
VpaK11BI	GGWCC	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	2 cut(s)	502, 2332
XceI	RCATGY	3 cut(s)	908, 967, 3238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2162
XhoI	CTCGAG	3 cut(s)	245, 1309, 3284
XmiI	GTMKAC	1 cut(s)	3081
XmnI	GAANNNNTTC	3 cut(s)	215, 1184, 1557
Zsp2I	ATGCAT	1 cut(s)	3008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.