Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Reverse (-)

41947925 .. 41948214

Gene Structure 290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCTCCACAGTATGTCATGCGTGGACTGTTTTCTGTCAAGTCTGATGTCTATAGCTTCGGTGTGTTAGTTCTGGAGATAGTGAGTGGACAGAAAAACAGTTCTTTCCGTCATGAAGAGAATGTGGAAGATCTAAGCTATGCAAGCATGGAGAAGCTGGAGGGAACGGTCAGCAGCTTCAAATCTAATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

64

Amino Acids

7.21

Weight (kDa)

5.68

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 40	3.9e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	4 cut(s)	57, 138, 157, 177
AluI	AGCT	4 cut(s)	57, 138, 157, 177
ApeKI	GCWGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	52
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	2 cut(s)	95, 179
BseXI	GCAGC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	6
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	12, 30, 101, 169
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	1 cut(s)	112
CviAII	CATG	3 cut(s)	19, 113, 148
CviJI	RGCY	5 cut(s)	5, 57, 138, 157, 177
CviKI_1	RGCY	5 cut(s)	5, 57, 138, 157, 177
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	22, 116, 151
FaiI	YATR	6 cut(s)	15, 20, 54, 114, 141, 149
FatI	CATG	3 cut(s)	18, 112, 147
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	95, 179
Hin1II	CATG	3 cut(s)	22, 116, 151
Hpy166II	GTNNAC	2 cut(s)	26, 89
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	74, 113
Hpy8I	GTNNAC	2 cut(s)	26, 89
HpyCH4III	ACNGT	4 cut(s)	12, 30, 101, 169
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	22, 116, 151
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	59, 143
Lsp1109I	GCAGC	1 cut(s)	186
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	128, 140
MflI	RGATCY	1 cut(s)	130
MnlI	CCTC	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	22, 116, 151
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	130
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	4 cut(s)	59, 140, 159, 179
SfcI	CTRYAG	1 cut(s)	52
SgeI	CNNG	8 cut(s)	31, 35, 52, 86, 125, 156, 160, 170
TaaI	ACNGT	4 cut(s)	12, 30, 101, 169
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.