Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Forward (+)

38519789 .. 38521141

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGTTTTATGAAATTGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

163

Amino Acids

18.7

Weight (kDa)

7.75

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	68, 160
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	48, 197
AgsI	TTSAA	2 cut(s)	346, 361
AluBI	AGCT	4 cut(s)	53, 71, 461, 489
AluI	AGCT	4 cut(s)	53, 71, 461, 489
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	3 cut(s)	21, 203, 369
AlwI	GGATC	2 cut(s)	68, 160
AlwNI	CAGNNNCTG	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	447
AspA2I	CCTAGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	266, 433
AvrII	CCTAGG	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	346, 433
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	21, 203, 369
BfaI	CTAG	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	175
BlnI	CCTAGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	56, 250, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	3 cut(s)	95, 212, 312
BseDI	CCNNGG	3 cut(s)	56, 250, 426
BseGI	GGATG	1 cut(s)	436
BseMI	GCAATG	3 cut(s)	95, 212, 312
BseMII	CTCAG	4 cut(s)	195, 444, 453, 484
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	247, 309
BsmAI	GTCTC	3 cut(s)	21, 203, 369
BsmFI	GGGAC	2 cut(s)	247, 309
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	60, 152, 256, 480
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	4 cut(s)	196, 445, 454, 483
BspPI	GGATC	2 cut(s)	68, 160
BsrDI	GCAATG	3 cut(s)	95, 212, 312
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	56, 250, 426
BssMI	GATC	4 cut(s)	60, 152, 256, 480
BssT1I	CCWWGG	2 cut(s)	250, 426
Bst4CI	ACNGT	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstDEI	CTNAG	4 cut(s)	204, 453, 462, 470
BstDSI	CCRYGG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	4 cut(s)	63, 155, 259, 483
BstMAI	GTCTC	3 cut(s)	21, 203, 369
BstMBI	GATC	4 cut(s)	60, 152, 256, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 233
BstPI	GGTNACC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	47, 196
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	5 cut(s)	53, 71, 169, 461, 489
CviKI_1	RGCY	5 cut(s)	53, 71, 169, 461, 489
CviQI	GTAC	2 cut(s)	47, 196
DdeI	CTNAG	4 cut(s)	204, 453, 462, 470
DpnI	GATC	4 cut(s)	62, 154, 258, 482
DpnII	GATC	4 cut(s)	60, 152, 256, 480
Eco130I	CCWWGG	2 cut(s)	250, 426
Eco57I	CTGAAG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	250, 426
ErhI	CCWWGG	2 cut(s)	250, 426
FaeI	CATG	1 cut(s)	152
FaiI	YATR	7 cut(s)	11, 45, 138, 150, 271, 293, 300
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	247, 309
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	480
FokI	GGATG	1 cut(s)	443
FspBI	CTAG	1 cut(s)	251
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	4 cut(s)	200, 230, 311, 332
HphI	GGTGA	2 cut(s)	266, 433
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	185, 452
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	100, 227, 236, 305, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 233
HpyF3I	CTNAG	4 cut(s)	204, 453, 462, 470
Hsp92II	CATG	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	60, 152, 256, 480
LmnI	GCTCC	2 cut(s)	58, 292
LpnPI	CCDG	5 cut(s)	63, 160, 183, 198, 465
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	3 cut(s)	140, 325, 421
MalI	GATC	4 cut(s)	62, 154, 258, 482
MboI	GATC	4 cut(s)	60, 152, 256, 480
MboII	GAAGA	2 cut(s)	119, 129
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	5 cut(s)	14, 36, 350, 393, 434
MlyI	GAGTC	3 cut(s)	209, 320, 326
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	3 cut(s)	199, 400, 479
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	175, 233
NdeII	GATC	4 cut(s)	60, 152, 256, 480
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	325, 421
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	230
PleI	GAGTC	3 cut(s)	208, 319, 326
PpsI	GAGTC	3 cut(s)	208, 319, 326
PspEI	GGTNACC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	2 cut(s)	48, 197
RsaNI	GTAC	2 cut(s)	47, 196
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	4 cut(s)	60, 152, 256, 480
SchI	GAGTC	3 cut(s)	209, 320, 326
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	55, 73, 256, 463, 491
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	14, 36, 350, 393, 434
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	250, 426
TaaI	ACNGT	1 cut(s)	243
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	5 cut(s)	14, 36, 350, 393, 434
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	325, 421
Tsp45I	GTSAC	2 cut(s)	325, 421
TspDTI	ATGAA	2 cut(s)	26, 447
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.