Topless-related protein 1-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3182 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1976 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc36I | ACCTGC | 1 cut(s) | 2953 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1351 |
| AccBSI | CCGCTC | 1 cut(s) | 166 |
| AccI | GTMKAC | 2 cut(s) | 1484, 1906 |
| AccII | CGCG | 3 cut(s) | 401, 874, 3024 |
| AciI | CCGC | 8 cut(s) | 166, 323, 654, 1431, 1689, 1902, 2354, 2632 |
| AcsI | RAATTY | 4 cut(s) | 234, 625, 1983, 2793 |
| AcuI | CTGAAG | 6 cut(s) | 1229, 1917, 2145, 2358, 2822, 3279 |
| AcvI | CACGTG | 1 cut(s) | 2682 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 3 cut(s) | 107, 1098, 1273 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 304, 607, 896, 1351, 1784, 2478 |
| AflII | CTTAAG | 1 cut(s) | 449 |
| AflIII | ACRYGT | 1 cut(s) | 2681 |
| AjnI | CCWGG | 2 cut(s) | 844, 1630 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 461, 493 |
| AleI | CACNNNNGTG | 1 cut(s) | 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 122, 154 |
| Alw21I | GWGCWC | 1 cut(s) | 2021 |
| Alw26I | GTCTC | 3 cut(s) | 1243, 2057, 2538 |
| Alw44I | GTGCAC | 1 cut(s) | 2017 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| AoxI | GGCC | 6 cut(s) | 465, 719, 1443, 1653, 3238, 3303 |
| ApaLI | GTGCAC | 1 cut(s) | 2017 |
| ApeKI | GCWGC | 6 cut(s) | 553, 782, 947, 1056, 2948, 3122 |
| ApoI | RAATTY | 4 cut(s) | 234, 625, 1983, 2793 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 63, 224 |
| AspLEI | GCGC | 2 cut(s) | 730, 3024 |
| AspS9I | GGNCC | 5 cut(s) | 22, 719, 842, 975, 2187 |
| AsuC2I | CCSGG | 3 cut(s) | 973, 1403, 1613 |
| AsuHPI | GGTGA | 5 cut(s) | 847, 1334, 1445, 1844, 2116 |
| AsuII | TTCGAA | 1 cut(s) | 141 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 4 cut(s) | 22, 842, 975, 2187 |
| BaeGI | GKGCMC | 2 cut(s) | 1526, 2021 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 233, 266 |
| BamHI | GGATCC | 2 cut(s) | 1228, 2273 |
| BanII | GRGCYC | 2 cut(s) | 1265, 1946 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1890, 1922, 2797, 2829 |
| BauI | CACGAG | 2 cut(s) | 2876, 2990 |
| BbrPI | CACGTG | 1 cut(s) | 2682 |
| BbsI | GAAGAC | 1 cut(s) | 1997 |
| Bbv12I | GWGCWC | 1 cut(s) | 2021 |
| BbvI | GCAGC | 6 cut(s) | 565, 794, 959, 1068, 2960, 3109 |
| BceAI | ACGGC | 1 cut(s) | 2832 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1349, 1383, 2940, 2974 |
| BciT130I | CCWGG | 2 cut(s) | 846, 1632 |
| BciVI | GTATCC | 1 cut(s) | 1601 |
| BclI | TGATCA | 2 cut(s) | 36, 1221 |
| BcnI | CCSGG | 3 cut(s) | 973, 1403, 1613 |
| BcoDI | GTCTC | 3 cut(s) | 1243, 2057, 2538 |
| BfaI | CTAG | 9 cut(s) | 299, 576, 920, 1146, 1914, 2115, 2264, 3113, 3307 |
| BfmI | CTRYAG | 2 cut(s) | 1657, 2946 |
| BfoI | RGCGCY | 1 cut(s) | 731 |
| BfrI | CTTAAG | 1 cut(s) | 449 |
| BfuAI | ACCTGC | 1 cut(s) | 2953 |
| BfuI | GTATCC | 1 cut(s) | 1601 |
| BglII | AGATCT | 2 cut(s) | 222, 3037 |
| BisI | GCNGC | 6 cut(s) | 554, 783, 948, 1057, 2949, 3123 |
| BlpI | GCTNAGC | 4 cut(s) | 393, 1407, 2736, 2832 |
| BlsI | GCNGC | 6 cut(s) | 555, 784, 949, 1058, 2950, 3124 |
| Bme1390I | CCNGG | 5 cut(s) | 846, 973, 1403, 1613, 1632 |
| Bme18I | GGWCC | 4 cut(s) | 22, 842, 975, 2187 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 5 cut(s) | 22, 719, 842, 975, 2187 |
| BmiI | GGNNCC | 7 cut(s) | 843, 888, 976, 1230, 1262, 2275, 3016 |
| BmrFI | CCNGG | 5 cut(s) | 846, 973, 1403, 1613, 1632 |
| BmrI | ACTGGG | 2 cut(s) | 891, 1479 |
| BmuI | ACTGGG | 2 cut(s) | 891, 1479 |
| BpiI | GAAGAC | 1 cut(s) | 1997 |
| BpmI | CTGGAG | 1 cut(s) | 2496 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 393, 1407, 2736, 2832 |
| Bpu14I | TTCGAA | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 2 cut(s) | 107, 2212 |
| BpuMI | CCSGG | 3 cut(s) | 973, 1403, 1613 |
| Bsa29I | ATCGAT | 2 cut(s) | 915, 1359 |
| BsaAI | YACGTR | 2 cut(s) | 1762, 2682 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2861 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 3 cut(s) | 845, 2317, 2343 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 191, 221, 2469, 2499 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 304, 607, 896, 1351, 1784, 2478 |
| Bse1I | ACTGG | 8 cut(s) | 731, 886, 1100, 1474, 2001, 2277, 2407, 3145 |
| Bse3DI | GCAATG | 1 cut(s) | 2826 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2861 |
| BseBI | CCWGG | 2 cut(s) | 846, 1632 |
| BseCI | ATCGAT | 2 cut(s) | 915, 1359 |
| BseDI | CCNNGG | 3 cut(s) | 845, 2317, 2343 |
| BseJI | GATNNNNATC | 1 cut(s) | 2861 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 304, 607, 896, 1351, 1784, 2478 |
| BseMI | GCAATG | 1 cut(s) | 2826 |
| BseNI | ACTGG | 8 cut(s) | 731, 886, 1100, 1474, 2001, 2277, 2407, 3145 |
| BseRI | GAGGAG | 4 cut(s) | 353, 732, 807, 2114 |
| BseSI | GKGCMC | 2 cut(s) | 1526, 2021 |
| BseXI | GCAGC | 6 cut(s) | 565, 794, 959, 1068, 2960, 3109 |
| BsgI | GTGCAG | 3 cut(s) | 663, 1683, 3108 |
| Bsh1236I | CGCG | 3 cut(s) | 401, 874, 3024 |
| BshFI | GGCC | 6 cut(s) | 467, 721, 1445, 1655, 3240, 3305 |
| BshVI | ATCGAT | 2 cut(s) | 915, 1359 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2021 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BsiSI | CCGG | 4 cut(s) | 972, 1403, 1612, 2798 |
| BslFI | GGGAC | 4 cut(s) | 988, 1133, 1705, 3218 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 304, 607, 896, 1351, 1784, 2478 |
| BsmAI | GTCTC | 3 cut(s) | 1243, 2057, 2538 |
| BsmFI | GGGAC | 4 cut(s) | 988, 1133, 1705, 3218 |
| BsmI | GAATGC | 7 cut(s) | 556, 938, 1391, 1465, 1513, 1923, 2379 |
| BsnI | GGCC | 6 cut(s) | 467, 721, 1445, 1655, 3240, 3305 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp119I | TTCGAA | 1 cut(s) | 141 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1265, 1526, 1946, 2021 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 393, 1407, 2736, 2832 |
| Bsp19I | CCATGG | 1 cut(s) | 2317 |
| Bsp68I | TCGCGA | 1 cut(s) | 401 |
| BspACI | CCGC | 8 cut(s) | 166, 323, 654, 1431, 1689, 1902, 2354, 2632 |
| BspANI | GGCC | 6 cut(s) | 467, 721, 1445, 1655, 3240, 3305 |
| BspDI | ATCGAT | 2 cut(s) | 915, 1359 |
| BspFNI | CGCG | 3 cut(s) | 401, 874, 3024 |
| BspHI | TCATGA | 1 cut(s) | 1498 |
| BspLI | GGNNCC | 7 cut(s) | 843, 888, 976, 1230, 1262, 2275, 3016 |
| BspMAI | CTGCAG | 1 cut(s) | 2950 |
| BspMI | ACCTGC | 1 cut(s) | 2953 |
| BspT104I | TTCGAA | 1 cut(s) | 141 |
| BspTI | CTTAAG | 1 cut(s) | 449 |
| BsrBI | CCGCTC | 1 cut(s) | 166 |
| BsrDI | GCAATG | 1 cut(s) | 2826 |
| BsrI | ACTGG | 8 cut(s) | 731, 886, 1100, 1474, 2001, 2277, 2407, 3145 |
| BssECI | CCNNGG | 3 cut(s) | 845, 2317, 2343 |
| BssNAI | GTATAC | 1 cut(s) | 1485 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 2 cut(s) | 2876, 2990 |
| BssT1I | CCWWGG | 2 cut(s) | 2317, 2343 |
| Bst1107I | GTATAC | 1 cut(s) | 1485 |
| Bst2BI | CACGAG | 2 cut(s) | 2876, 2990 |
| Bst2UI | CCWGG | 2 cut(s) | 846, 1632 |
| Bst4CI | ACNGT | 8 cut(s) | 495, 662, 967, 1742, 1973, 2780, 3019, 3175 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 1 cut(s) | 449 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 944 |
| BstBAI | YACGTR | 2 cut(s) | 1762, 2682 |
| BstBI | TTCGAA | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 5 cut(s) | 399, 2328, 2964, 2987, 3001 |
| BstDSI | CCRYGG | 1 cut(s) | 2317 |
| BstEII | GGTNACC | 1 cut(s) | 2347 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 302 |
| BstFNI | CGCG | 3 cut(s) | 401, 874, 3024 |
| BstH2I | RGCGCY | 1 cut(s) | 731 |
| BstHHI | GCGC | 2 cut(s) | 730, 3024 |
| BstMAI | GTCTC | 3 cut(s) | 1243, 2057, 2538 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 398, 686, 727, 944, 1661, 1695, 1961, 2129, 2264 |
| BstNI | CCWGG | 2 cut(s) | 846, 1632 |
| BstPI | GGTNACC | 1 cut(s) | 2347 |
| BstSCI | CCNGG | 5 cut(s) | 844, 971, 1401, 1611, 1630 |
| BstSFI | CTRYAG | 2 cut(s) | 1657, 2946 |
| BstSLI | GKGCMC | 2 cut(s) | 1526, 2021 |
| BstSNI | TACGTA | 1 cut(s) | 1762 |
| BstUI | CGCG | 3 cut(s) | 401, 874, 3024 |
| BstV1I | GCAGC | 6 cut(s) | 565, 794, 959, 1068, 2960, 3109 |
| BstV2I | GAAGAC | 1 cut(s) | 1997 |
| BstX2I | RGATCY | 8 cut(s) | 222, 307, 1228, 2057, 2145, 2273, 2851, 3037 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 289, 1006, 2095 |
| BstYI | RGATCY | 8 cut(s) | 222, 307, 1228, 2057, 2145, 2273, 2851, 3037 |
| BstZ17I | GTATAC | 1 cut(s) | 1485 |
| Bsu15I | ATCGAT | 2 cut(s) | 915, 1359 |
| BsuI | GTATCC | 1 cut(s) | 1601 |
| BsuRI | GGCC | 6 cut(s) | 467, 721, 1445, 1655, 3240, 3305 |
| BsuTUI | ATCGAT | 2 cut(s) | 915, 1359 |
| BtgI | CCRYGG | 1 cut(s) | 2317 |
| BtsI | GCAGTG | 3 cut(s) | 294, 933, 2933 |
| BtsIMutI | CAGTG | 5 cut(s) | 294, 933, 1994, 2284, 2933 |
| BtuMI | TCGCGA | 1 cut(s) | 401 |
| BveI | ACCTGC | 1 cut(s) | 2953 |
| Cac8I | GCNNGC | 5 cut(s) | 399, 2328, 2964, 2987, 3001 |
| CciI | TCATGA | 1 cut(s) | 1498 |
| CfoI | GCGC | 2 cut(s) | 730, 3024 |
| Cfr13I | GGNCC | 5 cut(s) | 22, 719, 842, 975, 2187 |
| ClaI | ATCGAT | 2 cut(s) | 915, 1359 |
| Csp6I | GTAC | 3 cut(s) | 106, 1097, 1272 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2641, 2676 |
| CviQI | GTAC | 3 cut(s) | 106, 1097, 1272 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1976 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1976 |
| Eco105I | TACGTA | 1 cut(s) | 1762 |
| Eco130I | CCWWGG | 2 cut(s) | 2317, 2343 |
| Eco147I | AGGCCT | 1 cut(s) | 3305 |
| Eco24I | GRGCYC | 2 cut(s) | 1265, 1946 |
| Eco32I | GATATC | 3 cut(s) | 295, 759, 1186 |
| Eco47I | GGWCC | 4 cut(s) | 22, 842, 975, 2187 |
| Eco57I | CTGAAG | 6 cut(s) | 1229, 1917, 2145, 2358, 2822, 3279 |
| Eco72I | CACGTG | 1 cut(s) | 2682 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| Eco91I | GGTNACC | 1 cut(s) | 2347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 302 |
| EcoO109I | RGGNCCY | 3 cut(s) | 22, 842, 975 |
| EcoO65I | GGTNACC | 1 cut(s) | 2347 |
| EcoRI | GAATTC | 2 cut(s) | 625, 2793 |
| EcoRII | CCWGG | 2 cut(s) | 844, 1630 |
| EcoRV | GATATC | 3 cut(s) | 295, 759, 1186 |
| EcoT14I | CCWWGG | 2 cut(s) | 2317, 2343 |
| EcoT38I | GRGCYC | 2 cut(s) | 1265, 1946 |
| ErhI | CCWWGG | 2 cut(s) | 2317, 2343 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 212, 244, 2545, 2577, 2820, 2852 |
| FaqI | GGGAC | 4 cut(s) | 988, 1133, 1705, 3218 |
| FauI | CCCGC | 3 cut(s) | 316, 1682, 2361 |
| FbaI | TGATCA | 2 cut(s) | 36, 1221 |
| FblI | GTMKAC | 2 cut(s) | 1484, 1906 |
| Fnu4HI | GCNGC | 6 cut(s) | 554, 783, 948, 1057, 2949, 3123 |
| FriOI | GRGCYC | 2 cut(s) | 1265, 1946 |
| Fsp4HI | GCNGC | 6 cut(s) | 554, 783, 948, 1057, 2949, 3123 |
| FspBI | CTAG | 9 cut(s) | 299, 576, 920, 1146, 1914, 2115, 2264, 3113, 3307 |
| GlaI | GCGC | 2 cut(s) | 729, 3023 |
| GluI | GCNGC | 6 cut(s) | 554, 783, 948, 1057, 2949, 3123 |
| GsuI | CTGGAG | 1 cut(s) | 2496 |
| HaeII | RGCGCY | 1 cut(s) | 731 |
| HaeIII | GGCC | 6 cut(s) | 467, 721, 1445, 1655, 3240, 3305 |
| HapII | CCGG | 4 cut(s) | 972, 1403, 1612, 2798 |
| HhaI | GCGC | 2 cut(s) | 730, 3024 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 2 cut(s) | 728, 3022 |
| HinP1I | GCGC | 2 cut(s) | 728, 3022 |
| HincII | GTYRAC | 3 cut(s) | 2235, 2469, 2885 |
| HindII | GTYRAC | 3 cut(s) | 2235, 2469, 2885 |
| HindIII | AAGCTT | 4 cut(s) | 541, 2654, 3001, 3265 |
| HpaII | CCGG | 4 cut(s) | 972, 1403, 1612, 2798 |
| HphI | GGTGA | 5 cut(s) | 847, 1334, 1445, 1844, 2116 |
| HpyCH4III | ACNGT | 8 cut(s) | 495, 662, 967, 1742, 1973, 2780, 3019, 3175 |
| HpyCH4IV | ACGT | 3 cut(s) | 5, 1761, 2681 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 398, 686, 727, 944, 1661, 1695, 1961, 2129, 2264 |
| HpySE526I | ACGT | 3 cut(s) | 5, 1761, 2681 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 2 cut(s) | 728, 3022 |
| Ksp22I | TGATCA | 2 cut(s) | 36, 1221 |
| LmnI | GCTCC | 6 cut(s) | 366, 1190, 1260, 1510, 1633, 2726 |
| Lsp1109I | GCAGC | 6 cut(s) | 565, 794, 959, 1068, 2960, 3109 |
| MaeI | CTAG | 9 cut(s) | 299, 576, 920, 1146, 1914, 2115, 2264, 3113, 3307 |
| MaeII | ACGT | 3 cut(s) | 5, 1761, 2681 |
| MaeIII | GTNAC | 7 cut(s) | 45, 404, 1634, 2304, 2347, 2663, 2677 |
| MbiI | CCGCTC | 1 cut(s) | 166 |
| MboII | GAAGA | 8 cut(s) | 217, 232, 347, 692, 1997, 2138, 2951, 3032 |
| MflI | RGATCY | 8 cut(s) | 222, 307, 1228, 2057, 2145, 2273, 2851, 3037 |
| MhlI | GDGCHC | 4 cut(s) | 1265, 1526, 1946, 2021 |
| MlyI | GAGTC | 4 cut(s) | 2685, 2803, 2890, 2894 |
| MmeI | TCCRAC | 1 cut(s) | 1084 |
| MroXI | GAANNNNTTC | 2 cut(s) | 63, 224 |
| MslI | CAYNNNNRTG | 5 cut(s) | 287, 1004, 1451, 1649, 2384 |
| MspA1I | CMGCKG | 1 cut(s) | 667 |
| MspCI | CTTAAG | 1 cut(s) | 449 |
| MspI | CCGG | 4 cut(s) | 972, 1403, 1612, 2798 |
| MspR9I | CCNGG | 5 cut(s) | 846, 973, 1403, 1613, 1632 |
| Mva1269I | GAATGC | 7 cut(s) | 556, 938, 1391, 1465, 1513, 1923, 2379 |
| MvaI | CCWGG | 2 cut(s) | 846, 1632 |
| MvnI | CGCG | 3 cut(s) | 401, 874, 3024 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 398, 686, 727, 944, 1661, 1695, 1961, 2129, 2264 |
| NciI | CCSGG | 3 cut(s) | 973, 1403, 1613 |
| NcoI | CCATGG | 1 cut(s) | 2317 |
| NlaIV | GGNNCC | 7 cut(s) | 843, 888, 976, 1230, 1262, 2275, 3016 |
| NmuCI | GTSAC | 4 cut(s) | 1634, 2304, 2663, 2677 |
| NruI | TCGCGA | 1 cut(s) | 401 |
| NspV | TTCGAA | 1 cut(s) | 141 |
| OliI | CACNNNNGTG | 1 cut(s) | 287 |
| PaeR7I | CTCGAG | 1 cut(s) | 254 |
| PagI | TCATGA | 1 cut(s) | 1498 |
| PceI | AGGCCT | 1 cut(s) | 3305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3192 |
| PctI | GAATGC | 7 cut(s) | 556, 938, 1391, 1465, 1513, 1923, 2379 |
| PdmI | GAANNNNTTC | 2 cut(s) | 63, 224 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1351 |
| PkrI | GCNGC | 6 cut(s) | 555, 784, 949, 1058, 2950, 3124 |
| PleI | GAGTC | 4 cut(s) | 2684, 2803, 2889, 2894 |
| PmaCI | CACGTG | 1 cut(s) | 2682 |
| PmlI | CACGTG | 1 cut(s) | 2682 |
| PpsI | GAGTC | 4 cut(s) | 2684, 2803, 2889, 2894 |
| Ppu21I | YACGTR | 2 cut(s) | 1762, 2682 |
| PpuMI | RGGWCCY | 3 cut(s) | 22, 842, 975 |
| PsiI | TTATAA | 1 cut(s) | 3182 |
| Psp5II | RGGWCCY | 3 cut(s) | 22, 842, 975 |
| Psp6I | CCWGG | 2 cut(s) | 844, 1630 |
| PspCI | CACGTG | 1 cut(s) | 2682 |
| PspEI | GGTNACC | 1 cut(s) | 2347 |
| PspGI | CCWGG | 2 cut(s) | 844, 1630 |
| PspN4I | GGNNCC | 7 cut(s) | 843, 888, 976, 1230, 1262, 2275, 3016 |
| PspPI | GGNCC | 5 cut(s) | 22, 719, 842, 975, 2187 |
| PspPPI | RGGWCCY | 3 cut(s) | 22, 842, 975 |
| PstI | CTGCAG | 1 cut(s) | 2950 |
| PsuI | RGATCY | 8 cut(s) | 222, 307, 1228, 2057, 2145, 2273, 2851, 3037 |
| PvuII | CAGCTG | 1 cut(s) | 667 |
| RruI | TCGCGA | 1 cut(s) | 401 |
| RsaI | GTAC | 3 cut(s) | 107, 1098, 1273 |
| RsaNI | GTAC | 3 cut(s) | 106, 1097, 1272 |
| RseI | CAYNNNNRTG | 5 cut(s) | 287, 1004, 1451, 1649, 2384 |
| SatI | GCNGC | 6 cut(s) | 554, 783, 948, 1057, 2949, 3123 |
| Sau96I | GGNCC | 5 cut(s) | 22, 719, 842, 975, 2187 |
| SchI | GAGTC | 4 cut(s) | 2685, 2803, 2890, 2894 |
| ScrFI | CCNGG | 5 cut(s) | 846, 973, 1403, 1613, 1632 |
| SduI | GDGCHC | 4 cut(s) | 1265, 1526, 1946, 2021 |
| SfcI | CTRYAG | 2 cut(s) | 1657, 2946 |
| Sfr274I | CTCGAG | 1 cut(s) | 254 |
| SfuI | TTCGAA | 1 cut(s) | 141 |
| SinI | GGWCC | 4 cut(s) | 22, 842, 975, 2187 |
| SlaI | CTCGAG | 1 cut(s) | 254 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 287, 1004, 1451, 1649, 2384 |
| SmlI | CTYRAG | 4 cut(s) | 86, 254, 449, 2191 |
| SmoI | CTYRAG | 4 cut(s) | 86, 254, 449, 2191 |
| SnaBI | TACGTA | 1 cut(s) | 1762 |
| SseBI | AGGCCT | 1 cut(s) | 3305 |
| SsiI | CCGC | 8 cut(s) | 166, 323, 654, 1431, 1689, 1902, 2354, 2632 |
| SspI | AATATT | 1 cut(s) | 1876 |
| SspMI | CTAG | 9 cut(s) | 299, 576, 920, 1146, 1914, 2115, 2264, 3113, 3307 |
| StuI | AGGCCT | 1 cut(s) | 3305 |
| StyD4I | CCNGG | 5 cut(s) | 844, 971, 1401, 1611, 1630 |
| StyI | CCWWGG | 2 cut(s) | 2317, 2343 |
| TaaI | ACNGT | 8 cut(s) | 495, 662, 967, 1742, 1973, 2780, 3019, 3175 |
| TaiI | ACGT | 3 cut(s) | 8, 1764, 2684 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TscAI | CASTG | 5 cut(s) | 294, 940, 2001, 2284, 2933 |
| TseFI | GTSAC | 4 cut(s) | 1634, 2304, 2663, 2677 |
| TseI | GCWGC | 6 cut(s) | 553, 782, 947, 1056, 2948, 3122 |
| Tsp45I | GTSAC | 4 cut(s) | 1634, 2304, 2663, 2677 |
| TspGWI | ACGGA | 1 cut(s) | 470 |
| TspRI | CASTG | 5 cut(s) | 294, 940, 2001, 2284, 2933 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1351 |
| Vha464I | CTTAAG | 1 cut(s) | 449 |
| VneI | GTGCAC | 1 cut(s) | 2017 |
| VpaK11BI | GGWCC | 4 cut(s) | 22, 842, 975, 2187 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 302 |
| XapI | RAATTY | 4 cut(s) | 234, 625, 1983, 2793 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 439, 2266 |
| XhoI | CTCGAG | 1 cut(s) | 254 |
| XmiI | GTMKAC | 2 cut(s) | 1484, 1906 |
| XmnI | GAANNNNTTC | 2 cut(s) | 63, 224 |
| XspI | CTAG | 9 cut(s) | 299, 576, 920, 1146, 1914, 2115, 2264, 3113, 3307 |
| ZraI | GACGTC | 1 cut(s) | 6 |