Rorug02G0316200

Topless-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
38503599 .. 38505720
2122 bp
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UTR
Exon/CDS
Intron
Rorug02G0316200.1

Sequence Viewer

Length: 189 bp
ATGTACTACCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGATTACAGTTTGACGTATTGTGGACTGGAGTATCTGCCTGTTTTTGCTTCCTTGATTGGATCTTGCTGTATCTAGCGTGA

Protein Analysis

62

Amino Acids

7.3

Weight (kDa)

8.77

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 33
AfaI GTAC 1 cut(s) 5
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 33
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BccI CCATC 2 cut(s) 23, 76
BfaI CTAG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 109, 139
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 109, 139
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 61
Bsp143I GATC 2 cut(s) 58, 168
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 109, 139
BssMI GATC 2 cut(s) 58, 168
Bst4CI ACNGT 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 61, 171
BstMBI GATC 2 cut(s) 58, 168
BstMCI CGRYCG 1 cut(s) 61
BstUI CGCG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtsCI GGATG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 3 cut(s) 14, 41, 54
CviKI_1 RGCY 3 cut(s) 14, 41, 54
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 60, 170
DpnII GATC 2 cut(s) 58, 168
FaiI YATR 1 cut(s) 102
FokI GGATG 1 cut(s) 51
FspBI CTAG 1 cut(s) 182
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 123
Kzo9I GATC 2 cut(s) 58, 168
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 24, 90, 120, 160
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 60, 170
MboI GATC 2 cut(s) 58, 168
MboII GAAGA 1 cut(s) 63
MflI RGATCY 1 cut(s) 168
MluCI AATT 1 cut(s) 33
MnlI CCTC 1 cut(s) 65
MvnI CGCG 1 cut(s) 49
NdeII GATC 2 cut(s) 58, 168
NlaIV GGNNCC 1 cut(s) 53
Ple19I CGATCG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 168
PvuI CGATCG 1 cut(s) 61
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 2 cut(s) 58, 168
SetI ASST 2 cut(s) 43, 126
SgeI CNNG 8 cut(s) 23, 60, 68, 117, 147, 159, 173, 184
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 57, 61
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 3
XapI RAATTY 1 cut(s) 33
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.