Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000983

Physical Location & Seq

Genomic Coordinates Reverse (-)

26394580 .. 26404744

Gene Structure 10165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1217100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGTCTTCTCTGAGTAGGGAGCTGGTGTTCCTGATCTTGCAGTTTCTCGATGAGGAAAAATTCAAAGAGACCGTTCACAAGCTGGAGCAGGAATCTGGGTTTTTCTTCAATATGAAATATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTTGAGAAATACCTCTCCGGCTTCACTAAAGTGGACGATAACCGCTACTCCATGAAAATCTTTTTCGAGATACGGAAGCAGAAGTATCTCGAGGCACTGGACAAGCATGATCGCTCCAAAGCCGTGGATATTCTAGTAAAGGATTTAAAGGTTTTTGCCACATTCAATGAAGAACTTTTCAAGGAAATCACTCAGCTCTTGACATTGGAGAACTTTAGGGAGAATGAACAACTATCCAAGTATGGAGATACAAAGTCTGCCAGGGCAATCATGTTGGTTGAACTTAAGAAACTGATTGAAGCAAATCCCTTATTCCGTGATAAATTGCAGTTTCCAAACCTTAAGAATTCGAGGCTACGGACTCTCATTAACCAAAGCTTAAATTGGCAGCATCAACTTTGTAAGAACCCAAGACCAAATCCTGATATAAAAACACTTTTTGTGGATCACTCATGTGGACAACCAAACGGTGCACGGGCACCATCGCCAGCAAACAACCCACTGCTAGGGTCCTTGCCAAAAGCTGGAGGGTTTCCTCAAATAGGTGCACATGGGCCTTTTCAACCTACACAAGCCCCGGTTCCAATTCCCCTTGCAGGTTGGATGTCCAATCCTTCCACTGTTACACATCCAGCAGTTTCTGAAGGAGGAGGTATTGGTCTTGGTGGTCCATCAATAACAGCTGCCTTGAAACATCCAAGGACTCCTCCAACTAATCCTTCTGTGGAGTACCCGTCCGGGGATTCTGATCATGTTTCTAAAAGAACAAGGCCGATGGGGCTTTCTACCGAAGTTAATCTCCCTGTTAACATGTTGCCAGTAACATTTCAAGGGCACGGTCATAGTCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACACGGACTTTGAATCAGGGTTCATCACCCATGAGCATGGATTTTCATCCTTCACAGCAGACTTTGCTTCTTGTTGGTACCAATGTGGGGGACATTGGGCTGTGGGAAGTTGGATCTAGGGAGCGACTAGTTTTAAGGAACTTCAAAGTATGGGATCTTAGTTCATGCTCAATGCCCCTGCAGGCTGCTCTAGTTAAGGAACCTGGTGTGTCTGTTAACCGTGTGATTTGGAGCCCTGATGGTGCTTTATTTGGTGTTGCTTACTCAAGGCATATTGTTCAAATATATTCTTACCATGGGGGTGATGACGTACGACAACACCTAGAGATTGATGCACATGTTGGTGGAGTAAATGATCTAGCTTTCTCCCATCCCAATAAGCAGCTTTGTGTGATTACCTGTGGGGATGACAAGACCATCAAGGTGTGGGATGCTACAACCGGTGCAAAACAATATACTTTTGAAGGTCACGAGGCTCCAGTTTATTCTGTCTGCCCACATTATAAGGAAAACATTCAGTTTATCTTTTCAACGGCACTGGATGGAAAGATAAAGGCTTGGCTGTATGACAATTTGGGATCTCGAGTTGATTATGATGCTCCCGGTCGCTGGTGTACGACCATGGCTTATAGTGCTGATGGTACAAGGCTATTTTCATGTGGGACAAGTAAAGATGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGCGCTGTGAAGAGGACCTATCAAGGCTTTCGCAAGCGTTCTTTTGGTGTTGTGCAATTCGATACTACTAAAAACCGGTTTTTGGCTGCTGGTGATGATTTTTCAATTAAATTTTGGGACATGGACAACACTCAACTTATGACAACTGTTGATGCTGATGGAGGCCTCCCAGCAAGCCCTCGTATCCGCTTTAACAAGGATGGCACTCTCTTGGCTGTTTCTGCCAACGAGAATGGGATTAAAGTTTTGGCAAATGCAGATGGAATGCGGTTGTTGCGAACATTTGAGAACCATCTTTCTTATGAGGCGTCAAGGACCTCTGAAGTTGTGACAAAGCCTGCAATAACCCCAATTCAAGCAGCTGCTAGCAGTGCCGGACTGGCTGAACGAAGTGCAGCTGCAGCTGCTCTTTCTGGAATGAATGGGGATGCTCGGAACTTGGGGGATGTGAAACCTAGAATAGCTGAAGAATCCAATGATAAATCAAAGATTTGGAAACTCACTGAAATCAGTGAACCATCCCAATGCCGTTCCTTGAGGCTACCTGAAAACATGAGAGTAACCAAGATTTCGAGGTTAATCTATACTAACTCAGGAAGTGCAATTTTGGCATTAGCATCAAACGCCATCCATTTGTTATGGAAATGGCAGAGGAGTGAGCGTAACTCTACTAGCAAGGCAACTGCTAGTGTTTCACCTCAACTGTGGCAACCCACAAGTGGCATTTTAATGACCAATGATATTACTGACACAAGTCCTGAAGAAGCTGTTCCTTGCTTCGCTTTGTCCAAGAATGATTCTTATGTAATGTCAGCATCTGGTGGAAAGATTTCCCTGTTCAATATGATGACATTTAAGACAATGACAACTTTCATGCCACCACCGCCTGCCGCAACATTTCTTGCTTTCCATCCTCAAGATAACAATATTATAGCTATTGGAATGGATGATTCTACAATTCAGATATATAATGTCCGCGTAGATGAGGTTAAGAGCAAGCTTAAAGGCCACTCTAAAAGGATAACTGGCCTGGCATTTTCTCATGTACTGAATGTGCTAGTTTCATCAGGAGCAGATGCACAGCTTTGCGTATGGAGCTCTGATGGATGGGAAAAGCTGAAGTCCAGATTCTTGCAGCTTCCAGCTGGAAGAACGACAGCTTCACTATCAGACACGCGTGTACAGTTTCATCACGACCAGCAACAGTTCTTGGTTGTTCACGAGACTCAACTTGCCATATATGAAACAACAAAACTAGAATGTGTCAAGCAGTGGGTCCCACGTGATTCTGCTGCACCAATTTCTCATGCAACATTCTCATGCGATAGCCAGCTTGTATATGCCAGCTTTTTAGATGCAACCGTTTGTGTGTTTAGTGCTGCAAATCTCAGACTACGGTGTCGTATTAATCCTTCTGCTTATCTTCCTGCTAATGTCAGTTCTAACGTGCAGCCCCTCGTGATTGCGGCGCATCCGCAAGAAGCAAATCAGTTCGCATTAGGACTATCGGATGGTGCTGTTCATGTCTTTGAGCCCCTTGAATCGGAAGGCAAATGGGGTGTGGCCCCACCAGTTGAAAATGGGTCAGCAAGCAGTGCGCCGGCTAATCAAGTTGGAGCTGCAGGATCAGATCAAGTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

1133

Amino Acids

124.77

Weight (kDa)

6.68

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	6.8e-13	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	5.3e-64	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	1.2e-24	TOPLESS, zinc finger domain
Beta-prop_WDR3_1st	PF25173	394 - 534	1.1e-14	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	416 - 568	1.3e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	418 - 631	4.6e-23	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	418 - 676	1.4e-26	THOC3 beta-propeller domain
WDR55	PF24796	419 - 534	8.1e-06	WDR55
Beta-prop_WDR3_2nd	PF25172	419 - 571	1.2e-09	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	431 - 537	1.7e-11	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	455 - 630	2.7e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	457 - 491	2.7e-06	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	471 - 583	3.2e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	473 - 537	3.2e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	528 - 666	3.8e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	554 - 679	1.8e-06	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	576 - 682	1.4e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	818 - 1036	4.6e-16	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	818 - 1054	1.1e-11	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	833 - 956	7.3e-12	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	835 - 959	5.4e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	835 - 950	8e-15	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	838 - 1046	2.3e-17	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	838 - 950	7.6e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	838 - 1046	1.2e-19	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	842 - 1039	9e-12	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	854 - 950	3.7e-09	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	854 - 960	1.4e-08	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	859 - 951	2.5e-07	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15750 AT1G15750 AT1G15750 AT1G15750 AT1G80490 AT1G80490 AT1G80490
fragaria_vesca	FvH4_2g28650 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170 FvH4_6g29170
malus_domestica	MD08G1152000.v1.1 MD09G1222700.v1.1 MD15G1129100.v1.1 MD17G1217100.v1.1
prunus_persica	Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.1G484400_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1 Prupe.3G093100_v2.0.a1
pyrus_communis	pycom08g13010 pycom15g11620 pycom17g22170 pycom808g00800
rosa_chinensis	RchiOBHm_Chr2g0134371 RchiOBHm_Chr6g0297431
rosa_laevigata	RLG00000011599 RLG00000019387
rosa_multiflora	Rmu_sc0004323.1_g000004 Rmu_ssc0000064.1_g000035
rosa_roxburghii	Rroxscaffold_2G00110290 Rroxscaffold_7G00170510
rosa_rugosa	Rorug02G0316200 Rorug02G0316300 Rorug02G0316400 Rorug02G0316500 Rorug02G0316600 Rorug06G0271900 Rorug06G0271900 Rorug06G0272000
rosa_samantha	Rh2AG368900 Rh2BG375100 Rh2CG352600 Rh2DG392200 Rh6AG383200 Rh6BG391600 Rh6CG396700 Rh6DG384000
rosa_wichuraiana	Rw2G030060 Rw6G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1545
AasI	GACNNNNNNGTC	1 cut(s)	3150
Acc36I	ACCTGC	1 cut(s)	743
Acc65I	GGTACC	1 cut(s)	1118
AccB1I	GGYRCC	2 cut(s)	634, 1118
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccII	CGCG	2 cut(s)	2730, 2929
AciI	CCGC	8 cut(s)	199, 1939, 2020, 2636, 2643, 2728, 3218, 3227
AclWI	GGATC	5 cut(s)	609, 1162, 1203, 1627, 3385
AcsI	RAATTY	3 cut(s)	59, 502, 1862
AcuI	CTGAAG	5 cut(s)	819, 2094, 2238, 2532, 2891
AcvI	CACGTG	1 cut(s)	3035
AcyI	GRCGYC	1 cut(s)	2060
AfaI	GTAC	7 cut(s)	887, 1120, 1353, 1657, 1684, 2799, 2934
AflII	CTTAAG	2 cut(s)	440, 497
AflIII	ACRYGT	3 cut(s)	966, 1378, 2927
AgeI	ACCGGT	2 cut(s)	1481, 1827
AhlI	ACTAGT	1 cut(s)	1168
AjnI	CCWGG	3 cut(s)	416, 1243, 2781
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	2 cut(s)	185, 609
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
Alw21I	GWGCWC	3 cut(s)	631, 706, 2852
Alw26I	GTCTC	2 cut(s)	62, 2969
Alw44I	GTGCAC	2 cut(s)	627, 702
AlwI	GGATC	5 cut(s)	609, 1162, 1203, 1627, 3385
AlwNI	CAGNNNCTG	2 cut(s)	797, 2570
Ama87I	CYCGRG	2 cut(s)	245, 1623
AoxI	GGCC	6 cut(s)	710, 926, 1915, 2758, 2779, 3315
ApaLI	GTGCAC	2 cut(s)	627, 702
ApoI	RAATTY	3 cut(s)	59, 502, 1862
AseI	ATTAAT	1 cut(s)	3159
AsiGI	ACCGGT	2 cut(s)	1481, 1827
Asp700I	GAANNNNTTC	3 cut(s)	1554, 2520, 2581
Asp718I	GGTACC	1 cut(s)	1118
AspLEI	GCGC	3 cut(s)	1757, 3223, 3352
AspS9I	GGNCC	7 cut(s)	666, 710, 824, 1767, 2067, 3028, 3316
AsuC2I	CCSGG	3 cut(s)	734, 895, 1644
AsuHPI	GGTGA	5 cut(s)	1059, 1355, 1730, 1856, 2439
AsuNHI	GCTAGC	1 cut(s)	2117
AvaI	CYCGRG	2 cut(s)	245, 1623
AvaII	GGWCC	5 cut(s)	666, 824, 1767, 2067, 3028
BaeGI	GKGCMC	4 cut(s)	631, 637, 706, 993
BaeI	ACNNNNGTAYC	2 cut(s)	1110, 1143
BanI	GGYRCC	2 cut(s)	634, 1118
BanII	GRGCYC	3 cut(s)	1277, 2852, 3288
BarI	GAAGNNNNNNTAC	2 cut(s)	3148, 3180
BauI	CACGAG	3 cut(s)	1511, 2972, 3209
BbrPI	CACGTG	1 cut(s)	3035
Bbv12I	GWGCWC	3 cut(s)	631, 706, 2852
BceAI	ACGGC	3 cut(s)	263, 1590, 2265
BciT130I	CCWGG	3 cut(s)	418, 1245, 2783
BciVI	GTATCC	1 cut(s)	1946
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	3 cut(s)	734, 895, 1644
BcoDI	GTCTC	2 cut(s)	62, 2969
BcuI	ACTAGT	1 cut(s)	1168
BfmI	CTRYAG	3 cut(s)	1220, 2151, 3372
BfoI	RGCGCY	1 cut(s)	1758
BfrI	CTTAAG	2 cut(s)	440, 497
BfuAI	ACCTGC	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	1946
BglI	GCCNNNNNGGC	2 cut(s)	934, 2132
Bme1390I	CCNGG	6 cut(s)	418, 734, 895, 1245, 1644, 2783
Bme18I	GGWCC	5 cut(s)	666, 824, 1767, 2067, 3028
BmeT110I	CYCGRG	2 cut(s)	245, 1623
BmgT120I	GGNCC	7 cut(s)	666, 710, 824, 1767, 2067, 3028, 3316
BmrFI	CCNGG	6 cut(s)	418, 734, 895, 1245, 1644, 2783
BmtI	GCTAGC	1 cut(s)	2121
BoxI	GACNNNNGTC	1 cut(s)	2505
BplI	GAGNNNNNCTC	2 cut(s)	2402, 2434
BpmI	CTGGAG	3 cut(s)	104, 702, 1503
BpuEI	CTTGAG	3 cut(s)	1291, 2308, 2652
BpuMI	CCSGG	3 cut(s)	734, 895, 1644
BsaAI	YACGTR	1 cut(s)	3035
BsaBI	GATNNNNATC	2 cut(s)	903, 1086
BsaHI	GRCGYC	1 cut(s)	2060
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	7 cut(s)	279, 417, 732, 854, 894, 1336, 1662
BsaWI	WCCGGW	2 cut(s)	1481, 1827
BsaXI	ACNNNNNCTCC	8 cut(s)	11, 41, 188, 218, 875, 905, 2398, 2428
Bse118I	RCCGGY	3 cut(s)	1481, 1827, 3352
Bse1I	ACTGG	7 cut(s)	258, 974, 1520, 1584, 2136, 2782, 3323
Bse8I	GATNNNNATC	2 cut(s)	903, 1086
BseBI	CCWGG	3 cut(s)	418, 1245, 2783
BseDI	CCNNGG	7 cut(s)	279, 417, 732, 854, 894, 1336, 1662
BseJI	GATNNNNATC	2 cut(s)	903, 1086
BseMII	CTCAG	3 cut(s)	362, 2358, 3154
BseNI	ACTGG	7 cut(s)	258, 974, 1520, 1584, 2136, 2782, 3323
BseRI	GAGGAG	3 cut(s)	819, 852, 2419
BseSI	GKGCMC	4 cut(s)	631, 637, 706, 993
BseYI	CCCAGC	1 cut(s)	1921
BsgI	GTGCAG	3 cut(s)	2166, 3030, 3221
Bsh1236I	CGCG	2 cut(s)	2730, 2929
Bsh1285I	CGRYCG	1 cut(s)	1648
BshFI	GGCC	6 cut(s)	712, 928, 1917, 2760, 2781, 3317
BshNI	GGYRCC	2 cut(s)	634, 1118
BshTI	ACCGGT	2 cut(s)	1481, 1827
BsiEI	CGRYCG	1 cut(s)	1648
BsiHKAI	GWGCWC	3 cut(s)	631, 706, 2852
BsiHKCI	CYCGRG	2 cut(s)	245, 1623
BsiSI	CCGG	8 cut(s)	174, 734, 894, 1482, 1644, 1828, 2127, 3353
BsiWI	CGTACG	1 cut(s)	1351
BslFI	GGGAC	4 cut(s)	1145, 1717, 1883, 3014
BsmAI	GTCTC	2 cut(s)	62, 2969
BsmFI	GGGAC	4 cut(s)	1145, 1717, 1883, 3014
BsmI	GAATGC	2 cut(s)	1018, 2022
BsnI	GGCC	6 cut(s)	712, 928, 1917, 2760, 2781, 3317
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	2 cut(s)	245, 1623
Bsp1286I	GDGCHC	7 cut(s)	631, 637, 706, 993, 1277, 2852, 3288
Bsp1407I	TGTACA	1 cut(s)	2932
Bsp19I	CCATGG	2 cut(s)	1336, 1662
BspACI	CCGC	8 cut(s)	199, 1939, 2020, 2636, 2643, 2728, 3218, 3227
BspANI	GGCC	6 cut(s)	712, 928, 1917, 2760, 2781, 3317
BspCNI	CTCAG	3 cut(s)	361, 2357, 3153
BspFNI	CGCG	2 cut(s)	2730, 2929
BspMAI	CTGCAG	3 cut(s)	1224, 2155, 3376
BspMI	ACCTGC	1 cut(s)	743
BspOI	GCTAGC	1 cut(s)	2121
BspPI	GGATC	5 cut(s)	609, 1162, 1203, 1627, 3385
BspT107I	GGYRCC	2 cut(s)	634, 1118
BspTI	CTTAAG	2 cut(s)	440, 497
BspTNI	GGTCTC	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	1481, 1827, 3352
BsrGI	TGTACA	1 cut(s)	2932
BsrI	ACTGG	7 cut(s)	258, 974, 1520, 1584, 2136, 2782, 3323
BssAI	RCCGGY	3 cut(s)	1481, 1827, 3352
BssECI	CCNNGG	7 cut(s)	279, 417, 732, 854, 894, 1336, 1662
BssNI	GRCGYC	1 cut(s)	2060
BssSI	CACGAG	3 cut(s)	1511, 2972, 3209
BssT1I	CCWWGG	3 cut(s)	854, 1336, 1662
Bst2BI	CACGAG	3 cut(s)	1511, 2972, 3209
Bst2UI	CCWGG	3 cut(s)	418, 1245, 2783
Bst6I	CTCTTC	1 cut(s)	1757
BstACI	GRCGYC	1 cut(s)	2060
BstAFI	CTTAAG	2 cut(s)	440, 497
BstAPI	GCANNNNNTGC	2 cut(s)	1105, 3347
BstAUI	TGTACA	1 cut(s)	2932
BstBAI	YACGTR	1 cut(s)	3035
BstDEI	CTNAG	6 cut(s)	11, 348, 1032, 1199, 2344, 3140
BstDSI	CCRYGG	3 cut(s)	279, 1336, 1662
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstFNI	CGCG	2 cut(s)	2730, 2929
BstH2I	RGCGCY	1 cut(s)	1758
BstHHI	GCGC	3 cut(s)	1757, 3223, 3352
BstMAI	GTCTC	2 cut(s)	62, 2969
BstMCI	CGRYCG	1 cut(s)	1648
BstNI	CCWGG	3 cut(s)	418, 1245, 2783
BstNSI	RCATGY	2 cut(s)	970, 1382
BstPAI	GACNNNNGTC	1 cut(s)	2505
BstSCI	CCNGG	6 cut(s)	416, 732, 893, 1243, 1642, 2781
BstSFI	CTRYAG	3 cut(s)	1220, 2151, 3372
BstSLI	GKGCMC	4 cut(s)	631, 637, 706, 993
BstUI	CGCG	2 cut(s)	2730, 2929
BstX2I	RGATCY	3 cut(s)	1154, 1195, 1619
BstXI	CCANNNNNNTGG	2 cut(s)	280, 1078
BstYI	RGATCY	3 cut(s)	1154, 1195, 1619
BsuI	GTATCC	1 cut(s)	1946
BsuRI	GGCC	6 cut(s)	712, 928, 1917, 2760, 2781, 3317
BtgI	CCRYGG	3 cut(s)	279, 1336, 1662
BtgZI	GCGATG	1 cut(s)	624
BtsI	GCAGTG	4 cut(s)	656, 2128, 3029, 3352
BtsIMutI	CAGTG	9 cut(s)	251, 656, 774, 1577, 2128, 2253, 2269, 3029, 3352
BveI	ACCTGC	1 cut(s)	743
CaiI	CAGNNNCTG	2 cut(s)	797, 2570
CfoI	GCGC	3 cut(s)	1757, 3223, 3352
Cfr10I	RCCGGY	3 cut(s)	1481, 1827, 3352
Cfr13I	GGNCC	7 cut(s)	666, 710, 824, 1767, 2067, 3028, 3316
CseI	GACGC	1 cut(s)	2049
CsiI	ACCWGGT	1 cut(s)	1243
Csp6I	GTAC	7 cut(s)	886, 1119, 1352, 1656, 1683, 2798, 2933
CspAI	ACCGGT	2 cut(s)	1481, 1827
CviQI	GTAC	7 cut(s)	886, 1119, 1352, 1656, 1683, 2798, 2933
DdeI	CTNAG	6 cut(s)	11, 348, 1032, 1199, 2344, 3140
DraI	TTTAAA	1 cut(s)	303
DrdI	GACNNNNNNGTC	1 cut(s)	3150
DseDI	GACNNNNNNGTC	1 cut(s)	3150
Eam1104I	CTCTTC	1 cut(s)	1757
EarI	CTCTTC	1 cut(s)	1757
Ecl136II	GAGCTC	1 cut(s)	2850
Eco130I	CCWWGG	3 cut(s)	854, 1336, 1662
Eco147I	AGGCCT	1 cut(s)	1917
Eco24I	GRGCYC	3 cut(s)	1277, 2852, 3288
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	5 cut(s)	666, 824, 1767, 2067, 3028
Eco53kI	GAGCTC	1 cut(s)	2850
Eco57I	CTGAAG	5 cut(s)	819, 2094, 2238, 2532, 2891
Eco72I	CACGTG	1 cut(s)	3035
Eco88I	CYCGRG	2 cut(s)	245, 1623
EcoICRI	GAGCTC	1 cut(s)	2850
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	4 cut(s)	666, 1767, 2067, 3028
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	416, 1243, 2781
EcoT14I	CCWWGG	3 cut(s)	854, 1336, 1662
EcoT38I	GRGCYC	3 cut(s)	1277, 2852, 3288
ErhI	CCWWGG	3 cut(s)	854, 1336, 1662
FaqI	GGGAC	4 cut(s)	1145, 1717, 1883, 3014
FbaI	TGATCA	1 cut(s)	904
FriOI	GRGCYC	3 cut(s)	1277, 2852, 3288
GlaI	GCGC	3 cut(s)	1756, 3222, 3351
GsaI	CCCAGC	1 cut(s)	1925
GsuI	CTGGAG	3 cut(s)	104, 702, 1503
HaeII	RGCGCY	1 cut(s)	1758
HaeIII	GGCC	6 cut(s)	712, 928, 1917, 2760, 2781, 3317
HapII	CCGG	8 cut(s)	174, 734, 894, 1482, 1644, 1828, 2127, 3353
HgaI	GACGC	1 cut(s)	2049
HhaI	GCGC	3 cut(s)	1757, 3223, 3352
Hin1I	GRCGYC	1 cut(s)	2060
Hin6I	GCGC	3 cut(s)	1755, 3221, 3350
HinP1I	GCGC	3 cut(s)	1755, 3221, 3350
HincII	GTYRAC	2 cut(s)	964, 1258
HindII	GTYRAC	2 cut(s)	964, 1258
HindIII	AAGCTT	3 cut(s)	532, 1005, 2750
HpaI	GTTAAC	2 cut(s)	964, 1258
HpaII	CCGG	8 cut(s)	174, 734, 894, 1482, 1644, 1828, 2127, 3353
HphI	GGTGA	5 cut(s)	1059, 1355, 1730, 1856, 2439
HpyAV	CCTTC	8 cut(s)	780, 794, 885, 1101, 1499, 1745, 3174, 3293
HpyCH4IV	ACGT	3 cut(s)	1350, 3034, 3198
HpyF3I	CTNAG	6 cut(s)	11, 348, 1032, 1199, 2344, 3140
HpySE526I	ACGT	3 cut(s)	1350, 3034, 3198
Hsp92I	GRCGYC	1 cut(s)	2060
HspAI	GCGC	3 cut(s)	1755, 3221, 3350
KflI	GGGWCCC	1 cut(s)	3028
KpnI	GGTACC	1 cut(s)	1122
KroI	GCCGGC	1 cut(s)	3352
KroNI	GCCGGC	1 cut(s)	3354
Ksp22I	TGATCA	1 cut(s)	904
KspAI	GTTAAC	2 cut(s)	964, 1258
MabI	ACCWGGT	1 cut(s)	1243
MaeII	ACGT	3 cut(s)	1350, 3034, 3198
MaeIII	GTNAC	7 cut(s)	778, 976, 1039, 1508, 2080, 2311, 2414
MboII	GAAGA	7 cut(s)	97, 338, 1774, 2231, 2525, 2913, 3167
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	3 cut(s)	1154, 1195, 1619
MhlI	GDGCHC	7 cut(s)	631, 637, 706, 993, 1277, 2852, 3288
MluI	ACGCGT	1 cut(s)	2927
MlyI	GAGTC	4 cut(s)	511, 853, 1730, 2971
MmeI	TCCRAC	4 cut(s)	737, 890, 1132, 3346
MroNI	GCCGGC	1 cut(s)	3352
MroXI	GAANNNNTTC	3 cut(s)	1554, 2520, 2581
MslI	CAYNNNNRTG	9 cut(s)	185, 609, 1076, 1341, 1383, 1463, 2275, 2480, 3070
MspA1I	CMGCKG	5 cut(s)	839, 2114, 2150, 2156, 2897
MspCI	CTTAAG	2 cut(s)	440, 497
MspI	CCGG	8 cut(s)	174, 734, 894, 1482, 1644, 1828, 2127, 3353
MspR9I	CCNGG	6 cut(s)	418, 734, 895, 1245, 1644, 2783
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	1018, 2022
MvaI	CCWGG	3 cut(s)	418, 1245, 2783
MvnI	CGCG	2 cut(s)	2730, 2929
NaeI	GCCGGC	1 cut(s)	3354
NciI	CCSGG	3 cut(s)	734, 895, 1644
NcoI	CCATGG	2 cut(s)	1336, 1662
NgoMIV	GCCGGC	1 cut(s)	3352
NheI	GCTAGC	1 cut(s)	2117
NmuCI	GTSAC	3 cut(s)	1039, 1508, 2080
NspI	RCATGY	2 cut(s)	970, 1382
OliI	CACNNNNGTG	2 cut(s)	185, 609
PaeR7I	CTCGAG	2 cut(s)	245, 1623
PceI	AGGCCT	1 cut(s)	1917
PciI	ACATGT	2 cut(s)	966, 1378
PctI	GAATGC	2 cut(s)	1018, 2022
PdiI	GCCGGC	1 cut(s)	3354
PdmI	GAANNNNTTC	3 cut(s)	1554, 2520, 2581
PfeI	GAWTC	9 cut(s)	92, 899, 1054, 2222, 2549, 2702, 2880, 3038, 3293
Pfl23II	CGTACG	1 cut(s)	1351
PflMI	CCANNNNNTGG	1 cut(s)	680
PinAI	ACCGGT	2 cut(s)	1481, 1827
PleI	GAGTC	4 cut(s)	511, 853, 1729, 2971
PmaCI	CACGTG	1 cut(s)	3035
PmlI	CACGTG	1 cut(s)	3035
PpsI	GAGTC	4 cut(s)	511, 853, 1729, 2971
Ppu21I	YACGTR	1 cut(s)	3035
PpuMI	RGGWCCY	4 cut(s)	666, 1767, 2067, 3028
PscI	ACATGT	2 cut(s)	966, 1378
PshAI	GACNNNNGTC	1 cut(s)	2505
PshBI	ATTAAT	1 cut(s)	3159
PsiI	TTATAA	1 cut(s)	1545
Psp124BI	GAGCTC	1 cut(s)	2852
Psp5II	RGGWCCY	4 cut(s)	666, 1767, 2067, 3028
Psp6I	CCWGG	3 cut(s)	416, 1243, 2781
PspCI	CACGTG	1 cut(s)	3035
PspFI	CCCAGC	1 cut(s)	1921
PspGI	CCWGG	3 cut(s)	416, 1243, 2781
PspLI	CGTACG	1 cut(s)	1351
PspPI	GGNCC	7 cut(s)	666, 710, 824, 1767, 2067, 3028, 3316
PspPPI	RGGWCCY	4 cut(s)	666, 1767, 2067, 3028
PstI	CTGCAG	3 cut(s)	1224, 2155, 3376
PstNI	CAGNNNCTG	2 cut(s)	797, 2570
PsuI	RGATCY	3 cut(s)	1154, 1195, 1619
PvuII	CAGCTG	5 cut(s)	839, 2114, 2150, 2156, 2897
RsaI	GTAC	7 cut(s)	887, 1120, 1353, 1657, 1684, 2799, 2934
RsaNI	GTAC	7 cut(s)	886, 1119, 1352, 1656, 1683, 2798, 2933
RseI	CAYNNNNRTG	9 cut(s)	185, 609, 1076, 1341, 1383, 1463, 2275, 2480, 3070
SacI	GAGCTC	1 cut(s)	2852
Sau96I	GGNCC	7 cut(s)	666, 710, 824, 1767, 2067, 3028, 3316
SbfI	CCTGCAGG	1 cut(s)	1224
SchI	GAGTC	4 cut(s)	511, 853, 1730, 2971
ScrFI	CCNGG	6 cut(s)	418, 734, 895, 1245, 1644, 2783
SdaI	CCTGCAGG	1 cut(s)	1224
SduI	GDGCHC	7 cut(s)	631, 637, 706, 993, 1277, 2852, 3288
SexAI	ACCWGGT	1 cut(s)	1243
SfcI	CTRYAG	3 cut(s)	1220, 2151, 3372
Sfr274I	CTCGAG	2 cut(s)	245, 1623
SinI	GGWCC	5 cut(s)	666, 824, 1767, 2067, 3028
SlaI	CTCGAG	2 cut(s)	245, 1623
SmiMI	CAYNNNNRTG	9 cut(s)	185, 609, 1076, 1341, 1383, 1463, 2275, 2480, 3070
SmlI	CTYRAG	7 cut(s)	245, 440, 497, 1306, 1623, 2287, 2667
SmoI	CTYRAG	7 cut(s)	245, 440, 497, 1306, 1623, 2287, 2667
SpeI	ACTAGT	1 cut(s)	1168
Sse8387I	CCTGCAGG	1 cut(s)	1224
SseBI	AGGCCT	1 cut(s)	1917
SsiI	CCGC	8 cut(s)	199, 1939, 2020, 2636, 2643, 2728, 3218, 3227
SspI	AATATT	2 cut(s)	119, 2680
SstI	GAGCTC	1 cut(s)	2852
StuI	AGGCCT	1 cut(s)	1917
StyD4I	CCNGG	6 cut(s)	416, 732, 893, 1243, 1642, 2781
StyI	CCWWGG	3 cut(s)	854, 1336, 1662
TaiI	ACGT	3 cut(s)	1353, 3037, 3201
TaqI	TCGA	7 cut(s)	48, 222, 246, 506, 1624, 1812, 2324
TatI	WGTACW	2 cut(s)	2797, 2932
TauI	GCSGC	2 cut(s)	2645, 3221
TfiI	GAWTC	9 cut(s)	92, 899, 1054, 2222, 2549, 2702, 2880, 3038, 3293
TscAI	CASTG	9 cut(s)	258, 663, 781, 1584, 2128, 2260, 2269, 3029, 3352
TseFI	GTSAC	3 cut(s)	1039, 1508, 2080
Tsp45I	GTSAC	3 cut(s)	1039, 1508, 2080
TspGWI	ACGGA	4 cut(s)	244, 461, 529, 1060
TspRI	CASTG	9 cut(s)	258, 663, 781, 1584, 2128, 2260, 2269, 3029, 3352
Van91I	CCANNNNNTGG	1 cut(s)	680
Vha464I	CTTAAG	2 cut(s)	440, 497
VneI	GTGCAC	2 cut(s)	627, 702
VpaK11BI	GGWCC	5 cut(s)	666, 824, 1767, 2067, 3028
VspI	ATTAAT	1 cut(s)	3159
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	3 cut(s)	59, 502, 1862
XceI	RCATGY	2 cut(s)	970, 1382
XhoI	CTCGAG	2 cut(s)	245, 1623
XmnI	GAANNNNTTC	3 cut(s)	1554, 2520, 2581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.