Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018595

Physical Location & Seq

Genomic Coordinates Reverse (-)

72283811 .. 72285259

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0605100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCACCAAAATCTGATCTTTCTCTTTTCAAAGTCACTCCCCTCCTCCTCCTCGCCCTCTTTTCTTTCCTCTCTAATGCAACGGCAAACTCATCTCCGCTTGAGTTCCTTGAGCATCTTAAGGGTTGTCAAAAAGGTGACAAGGTCAAGGGCATCAATGACCTCAAGAAGTACCTTCACAACTTCGGTTACTTGAACTACAAGAACCACATTCATTCTGATGACGATGATTTCGACGAGCTCTTGGAGGAAGCCGTCAAGACTTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGGTGGACGACAAAACCATATTACAGATGATGATGCCTCGTTGTGGTGTGCCCGATATCGTCAATGGCACCACATCCATGCGATCAGCCAAGATAAAGCACCAGCACGGTTCAATTCATACCACTGTTCACTACTCATTTCCTAATGGAAAACCAAAATGGCCTTCCTCTAAATACCATCTGACATACGCTTTCTTCCCCGGCACCCCATCCCAAGCCACGGGTGCTATAGCACAGGCTTTCGCAACATGGGCTAGAAGCACTCCCTTCAAGTTCAGTCAGGCCCAAAATTACCAGAATGCAGATGTCAAGATTAGTTTTCACCGAGGTAATCATGGAGACGGGCGTAATTTTGATGGGCCTGGCGGAGTGCTGGCCCATGCTTTTTACCCTACGGATGGAAGATTCCACTTCGACGCAGCTGAAAATTGGTCCGCGGGTGCTAAACCAGGTGCCTATGACTTGGAGAGTGTTGCTTTGCACGAAATAGGACACCTTCTGGGACTTGGACATAGCTCAGTGAAGGGAGCTGTCATGGCAGCAACCATCTCCCCGGGAGTCACTCTTAAAAGTTTGAACGGGGACGATATTCAAGGAATTAAAGCTTTATACAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

305

Amino Acids

33.41

Weight (kDa)

8.35

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	52 - 107	3e-10	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	152 - 303	1.5e-47	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018595)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387531 RchiOBHm_Chr5g0019461 RchiOBHm_Chr5g0075211
rosa_roxburghii	Rroxscaffold_5G00334210
rosa_rugosa	Rorug02G0605100 Rorug05G0148400 Rorug05G0148500 Rorug06G0271900
rosa_wichuraiana	Rw1G037560 Rw2G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	4, 365, 500, 749
AccII	CGCG	1 cut(s)	734
AciI	CCGC	4 cut(s)	98, 663, 732, 734
AclI	AACGTT	1 cut(s)	912
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	341, 517, 695
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	31, 196, 411, 568, 874, 890
AjnI	CCWGG	2 cut(s)	658, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	6 cut(s)	241, 271, 719, 813, 827, 902
AluI	AGCT	6 cut(s)	241, 271, 719, 813, 827, 902
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	630
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	4 cut(s)	458, 579, 656, 672
ApeKI	GCWGC	2 cut(s)	716, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	4 cut(s)	580, 656, 673, 729
AsuC2I	CCSGG	3 cut(s)	498, 851, 852
AsuHPI	GGTGA	2 cut(s)	149, 611
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	729
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	4 cut(s)	4, 365, 500, 749
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	728, 848
BccI	CCATC	5 cut(s)	483, 514, 647, 689, 851
BceAI	ACGGC	2 cut(s)	99, 239
BciT130I	CCWGG	2 cut(s)	660, 747
BcnI	CCSGG	3 cut(s)	498, 851, 852
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	2 cut(s)	717, 837
BlsI	GCNGC	2 cut(s)	718, 838
Bme1390I	CCNGG	5 cut(s)	498, 660, 747, 851, 852
Bme18I	GGWCC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	4 cut(s)	580, 656, 673, 729
BmiI	GGNNCC	4 cut(s)	6, 367, 502, 751
BmrFI	CCNGG	5 cut(s)	498, 660, 747, 851, 852
BmsI	GCATC	3 cut(s)	124, 162, 321
BpuEI	CTTGAG	4 cut(s)	122, 131, 149, 269
BpuMI	CCSGG	3 cut(s)	498, 851, 852
BsaJI	CCNNGG	6 cut(s)	496, 516, 622, 732, 849, 850
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 517, 695
BseBI	CCWGG	2 cut(s)	660, 747
BseDI	CCNNGG	6 cut(s)	496, 516, 622, 732, 849, 850
BseGI	GGATG	3 cut(s)	371, 506, 700
BseLI	CCNNNNNNNGG	3 cut(s)	341, 517, 695
BseMII	CTCAG	1 cut(s)	828
BseRI	GAGGAG	3 cut(s)	35, 38, 41
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	728, 848
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	4 cut(s)	460, 581, 658, 674
BshNI	GGYRCC	4 cut(s)	4, 365, 500, 749
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	3 cut(s)	294, 498, 851
BslFI	GGGAC	2 cut(s)	813, 893
BslI	CCNNNNNNNGG	3 cut(s)	341, 517, 695
BsmAI	GTCTC	1 cut(s)	630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	813, 893
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	4 cut(s)	460, 581, 658, 674
BsoBI	CYCGRG	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	243, 351
Bsp143I	GATC	2 cut(s)	16, 380
BspACI	CCGC	4 cut(s)	98, 663, 732, 734
BspANI	GGCC	4 cut(s)	460, 581, 658, 674
BspCNI	CTCAG	1 cut(s)	827
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	4 cut(s)	6, 367, 502, 751
BspT107I	GGYRCC	4 cut(s)	4, 365, 500, 749
BspTI	CTTAAG	1 cut(s)	119
BssECI	CCNNGG	6 cut(s)	496, 516, 622, 732, 849, 850
BssMI	GATC	2 cut(s)	16, 380
Bst2UI	CCWGG	2 cut(s)	660, 747
Bst4CI	ACNGT	3 cut(s)	301, 407, 424
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	1 cut(s)	814
BstDSI	CCRYGG	2 cut(s)	516, 732
BstF5I	GGATG	3 cut(s)	371, 506, 700
BstFNI	CGCG	1 cut(s)	734
BstKTI	GATC	2 cut(s)	19, 383
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	16, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 548, 833
BstNI	CCWGG	2 cut(s)	660, 747
BstSCI	CCNGG	5 cut(s)	496, 658, 745, 849, 850
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	2 cut(s)	728, 848
BsuRI	GGCC	4 cut(s)	460, 581, 658, 674
BtgI	CCRYGG	2 cut(s)	516, 732
BtsCI	GGATG	3 cut(s)	371, 506, 700
BtsIMutI	CAGTG	2 cut(s)	420, 822
Cac8I	GCNNGC	1 cut(s)	672
Cfr13I	GGNCC	4 cut(s)	580, 656, 673, 729
Cfr42I	CCGCGG	1 cut(s)	735
Cfr9I	CCCGGG	1 cut(s)	850
CseI	GACGC	1 cut(s)	722
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	5 cut(s)	376, 546, 632, 677, 832
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	814
DpnI	GATC	2 cut(s)	18, 382
DpnII	GATC	2 cut(s)	16, 380
EciI	GGCGGA	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	729
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	850
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	658, 745
EcoRV	GATATC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	5 cut(s)	379, 549, 635, 680, 835
FaqI	GGGAC	2 cut(s)	813, 893
FatI	CATG	5 cut(s)	375, 545, 631, 676, 831
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	2 cut(s)	717, 837
FokI	GGATG	3 cut(s)	358, 493, 707
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	717, 837
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	2 cut(s)	717, 837
HaeIII	GGCC	4 cut(s)	460, 581, 658, 674
HapII	CCGG	3 cut(s)	294, 498, 851
HgaI	GACGC	1 cut(s)	722
Hin1II	CATG	5 cut(s)	379, 549, 635, 680, 835
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	2 cut(s)	702, 855
HpaII	CCGG	3 cut(s)	294, 498, 851
HphI	GGTGA	2 cut(s)	149, 611
Hpy166II	GTNNAC	3 cut(s)	291, 304, 427
Hpy188I	TCNGA	3 cut(s)	16, 220, 480
Hpy188III	TCNNGA	3 cut(s)	166, 259, 607
Hpy8I	GTNNAC	3 cut(s)	291, 304, 427
Hpy99I	CGWCG	2 cut(s)	239, 716
HpyAV	CCTTC	5 cut(s)	185, 471, 574, 803, 814
HpyCH4III	ACNGT	3 cut(s)	301, 407, 424
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	3 cut(s)	80, 599, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 548, 833
HpyF3I	CTNAG	1 cut(s)	814
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	5 cut(s)	379, 549, 635, 680, 835
KspI	CCGCGG	1 cut(s)	735
Kzo9I	GATC	2 cut(s)	16, 380
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	2 cut(s)	728, 848
LweI	GCATC	3 cut(s)	124, 162, 321
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	4 cut(s)	34, 137, 188, 856
MalI	GATC	2 cut(s)	18, 382
MboI	GATC	2 cut(s)	16, 380
MboII	GAAGA	2 cut(s)	484, 711
MhlI	GDGCHC	2 cut(s)	243, 351
MluCI	AATT	6 cut(s)	274, 411, 586, 646, 724, 894
MlyI	GAGTC	1 cut(s)	864
MseI	TTAA	3 cut(s)	120, 864, 897
MslI	CAYNNNNRTG	2 cut(s)	219, 374
MspA1I	CMGCKG	2 cut(s)	719, 734
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	3 cut(s)	294, 498, 851
MspR9I	CCNGG	5 cut(s)	498, 660, 747, 851, 852
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	2 cut(s)	660, 747
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	3 cut(s)	521, 548, 833
NciI	CCSGG	3 cut(s)	498, 851, 852
NdeII	GATC	2 cut(s)	16, 380
NlaIII	CATG	5 cut(s)	379, 549, 635, 680, 835
NlaIV	GGNNCC	4 cut(s)	6, 367, 502, 751
NmuCI	GTSAC	3 cut(s)	34, 137, 856
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	702
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	718, 838
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	912
Psp6I	CCWGG	2 cut(s)	658, 745
PspGI	CCWGG	2 cut(s)	658, 745
PspN4I	GGNNCC	4 cut(s)	6, 367, 502, 751
PspPI	GGNCC	4 cut(s)	580, 656, 673, 729
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	219, 374
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	120, 864, 897
SatI	GCNGC	2 cut(s)	717, 837
Sau3AI	GATC	2 cut(s)	16, 380
Sau96I	GGNCC	4 cut(s)	580, 656, 673, 729
SchI	GAGTC	1 cut(s)	864
ScrFI	CCNGG	5 cut(s)	498, 660, 747, 851, 852
SduI	GDGCHC	2 cut(s)	243, 351
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	3 cut(s)	124, 162, 321
SfcI	CTRYAG	1 cut(s)	525
Sfr303I	CCGCGG	1 cut(s)	735
SgrBI	CCGCGG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	729
SmaI	CCCGGG	1 cut(s)	852
SmiMI	CAYNNNNRTG	2 cut(s)	219, 374
SmlI	CTYRAG	5 cut(s)	101, 110, 119, 164, 284
SmoI	CTYRAG	5 cut(s)	101, 110, 119, 164, 284
Sse9I	AATT	6 cut(s)	274, 411, 586, 646, 724, 894
SsiI	CCGC	4 cut(s)	98, 663, 732, 734
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	5 cut(s)	496, 658, 745, 849, 850
TaaI	ACNGT	3 cut(s)	301, 407, 424
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	2 cut(s)	234, 711
TasI	AATT	6 cut(s)	274, 411, 586, 646, 724, 894
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	3 cut(s)	120, 864, 897
Tru9I	TTAA	3 cut(s)	120, 864, 897
TscAI	CASTG	2 cut(s)	427, 822
TseFI	GTSAC	3 cut(s)	34, 137, 856
TseI	GCWGC	2 cut(s)	716, 836
Tsp45I	GTSAC	3 cut(s)	34, 137, 856
TspDTI	ATGAA	2 cut(s)	203, 404
TspGWI	ACGGA	1 cut(s)	707
TspMI	CCCGGG	1 cut(s)	850
TspRI	CASTG	2 cut(s)	427, 822
Tth111I	GACNNNGTC	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	850
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.