RchiOBHm_Chr5g0019461

strand invasion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018595
Physical Location & Seq
Reverse (-)
13957124 .. 13958034
911 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29959

Sequence Viewer

Length: 171 bp
ATGACCTGGATGATAAGTATGCTCATGTTTCAGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTAGATGTTACTGGAAGAGGAGAACTTGGAGATCGCCAGGTCAGTTTCACAGGTTCCGTGCAATGCCTATACTCACTTAGATCTTATGCTCTATGTCTTTATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000150 GO:0000166 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000709 GO:0000724 GO:0000725 GO:0000730 GO:0000781 GO:0000793 GO:0000794 GO:0001541 GO:0001556 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007548 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008406 GO:0008585 GO:0009314 GO:0009628 GO:0009987 GO:0009994 GO:0010212 GO:0010520 GO:0010564 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0030554 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0033043 GO:0033554 GO:0034622 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0036094 GO:0040020 GO:0042148 GO:0042623 GO:0042802 GO:0043142 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0045003 GO:0045132 GO:0045137 GO:0045143 GO:0046483 GO:0046545 GO:0046660 GO:0048232 GO:0048285 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048515 GO:0048599 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051259 GO:0051260 GO:0051276 GO:0051321 GO:0051445 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0060631 GO:0061458 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070192 GO:0070193 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090735 GO:0097159 GO:0097367 GO:0098687 GO:0098813 GO:0140013 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1903046 GO:1905334 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko03008 ko04113 map03008 map04113
Pfam Domains
Protein Families
HHH_5 Rad51

Protein Analysis

56

Amino Acids

6.4

Weight (kDa)

5.91

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 10 - 47 6.5e-07 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 2 cut(s) 5, 99
AsuHPI GGTGA 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 7, 101
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 7, 101
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 7, 101
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 131
BseBI CCWGG 2 cut(s) 7, 101
BseGI GGATG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 96
Bsp143I GATC 2 cut(s) 94, 143
BspLI GGNNCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 79
BssMI GATC 2 cut(s) 94, 143
Bst2UI CCWGG 2 cut(s) 7, 101
Bst6I CTCTTC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 97, 146
BstMBI GATC 2 cut(s) 94, 143
BstNI CCWGG 2 cut(s) 7, 101
BstSCI CCNGG 2 cut(s) 5, 99
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BtsCI GGATG 1 cut(s) 15
CviAII CATG 1 cut(s) 25
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 96, 145
DpnII GATC 2 cut(s) 94, 143
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 5, 99
FaeI CATG 1 cut(s) 28
FaiI YATR 7 cut(s) 20, 26, 38, 133, 150, 157, 169
FatI CATG 1 cut(s) 24
FokI GGATG 1 cut(s) 22
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 41
HphI GGTGA 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 2 cut(s) 94, 143
LpnPI CCDG 6 cut(s) 17, 19, 60, 86, 99, 113
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 96, 145
MboI GATC 2 cut(s) 94, 143
MboII GAAGA 1 cut(s) 90
MflI RGATCY 1 cut(s) 143
MnlI CCTC 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 7, 101
MvaI CCWGG 2 cut(s) 7, 101
NdeII GATC 2 cut(s) 94, 143
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 5, 99
PspGI CCWGG 2 cut(s) 5, 99
PspN4I GGNNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 143
Sau3AI GATC 2 cut(s) 94, 143
ScrFI CCNGG 2 cut(s) 7, 101
SetI ASST 4 cut(s) 8, 36, 105, 118
StyD4I CCNGG 2 cut(s) 5, 99
TaqI TCGA 1 cut(s) 61
TfiI GAWTC 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.