RchiOBHm_Chr4g0388871

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018017
Physical Location & Seq
Forward (+)
4033446 .. 4034699
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1254 bp
ATGTTATGTAATTGTGTTGGTGCTACTGCTTGTCTGAAGAGAATTCGCTACCGTGTTAAACATTCCTATTCAACGATAAAGATGTACTTTTCGGGGCATGGGAAGCTTAAGTCTATGAAGAACAGGATCATGGAGGTTCTTGAAAGCATTATGCCTCTTGCACAAGAGGAGCGTCGAACTACTGTTGCCAAAATATTCAATAAGCTTACTTCAATGCCTCAAGACGCTAATTTTATCCATGTTGACATATATGATGTGACTGAGCCTGAGCCTAAGCCTAAGCCTGCAACCAGGTCAGCCATGGTAAATGAGTTGGAAAAAGTGAGACTTGATAGATCATGTAGTATTTGCATGGACGAATTTGATAAAGGTGTTATAGCTATTCGCTTGCCCTGCTTACACATTTTTCATGGAAATTGCATTTTCCGGTGGCTGGAGACGGATCATAAGTGTCCTTTGTGCCGAAATCCAATGCCTCACGATGATGTAGATCAGTATTCCTATGAACCCGACGACACTAGTCCTTCGGCGACCGTATACCAGCATTCTTATTATACTGAAATTGAGTCAAAAACATGCACACCAGCACCATCATCCATGCTTCAGATCCGATTCAATCTCTACAAGTCAAACCAAGATGGTTTATTACGGGTCAACGGTGAAGTTTCACGCACAATAGATACTGGACAAATCTACCTCGAAACTGAGCCACAATTACTTACAATTCCTAGTCGTTGCGAGCTGCAGCCAACTATGATCACCCAAGTGCTTAGAAGCATGAGTGTTCCGCGGCATGAGCAGCCACCCATTGTTGCCAAAATATTTGAGACGGTTGCCAGCAACAATTCTGATGGTGGTGGCGGTGCTTTTATTAATGCGGACATCTACGATGAGACTTTGAAATTGTTCGATCTTATGGCCTTTGCTCGACGGCTTTTCAGGATTAGACGTGTTGGAATTGATCGTCCCATCACAGACGAAATAGATGCTAGGGTTGCAAGGGAATTAGCTGAGGAGGCATTATTAGGAAAGCCTAGCACTAAGCCTGCAACTAAATCAGCCATTGAGGGGTTGGAGAGAGTGAGAGTTGATAAATTGTGTGGTATTTGTATGGACGACTTTGAGGATGGTCTAATAGCTACAATAGCTACTCGCTTCCCATGCTTACACATTTTTCATGGACATTGCATTCTCCGGTGGCTCGAGACCGATCACAAGTGTCCTTTGTGCCGATACCCATTGCTTAATTTGTGA

Protein Analysis

417

Amino Acids

47.54

Weight (kDa)

6.88

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 107 - 158 1e-05 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1 PF12678 108 - 155 4.7e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 113 - 155 2.5e-14 Ring finger domain
zf-C3HC4_2 PF13923 114 - 154 1.2e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 114 - 154 4.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 114 - 141 5.7e-08 RING-like zinc finger
zf-RING_UBOX PF13445 114 - 152 7.2e-07 RING-type zinc-finger
zf-RING_2 PF13639 366 - 411 3.5e-12 Ring finger domain
zf-C3HC4_2 PF13923 367 - 410 3.5e-10 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 367 - 411 1e-07 RING-H2 zinc finger domain
zf-C3HC4 PF00097 367 - 410 1.1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 790
AciI CCGC 4 cut(s) 788, 790, 861, 878
AclWI GGATC 3 cut(s) 134, 450, 601
AcsI RAATTY 2 cut(s) 42, 359
AcuI CTGAAG 2 cut(s) 56, 587
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 433, 1068
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 949
AgsI TTSAA 6 cut(s) 72, 143, 199, 213, 616, 901
AhlI ACTAGT 1 cut(s) 518
AjiI CACGTC 1 cut(s) 950
AjnI CCWGG 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 7 cut(s) 106, 205, 380, 742, 1010, 1139, 1148
AluI AGCT 7 cut(s) 106, 205, 380, 742, 1010, 1139, 1148
Alw26I GTCTC 5 cut(s) 319, 431, 821, 887, 1199
AlwI GGATC 3 cut(s) 134, 450, 601
Ama87I CYCGRG 1 cut(s) 1202
AoxI GGCC 1 cut(s) 918
ApeKI GCWGC 3 cut(s) 742, 745, 799
ApoI RAATTY 2 cut(s) 42, 359
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 671, 751
AvaI CYCGRG 1 cut(s) 1202
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 3 cut(s) 729, 757, 811
BccI CCATC 5 cut(s) 598, 632, 845, 977, 1121
BceAI ACGGC 1 cut(s) 947
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 5 cut(s) 319, 431, 821, 887, 1199
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 4 cut(s) 519, 729, 990, 1035
BfmI CTRYAG 1 cut(s) 743
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 4 cut(s) 743, 746, 791, 800
BlsI GCNGC 4 cut(s) 744, 747, 792, 801
Bme1390I CCNGG 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 1202
BmgBI CACGTC 1 cut(s) 950
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 976
BoxI GACNNNNGTC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 455
Bpu10I CCTNAGC 4 cut(s) 267, 273, 279, 1011
BpuEI CTTGAG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 1199
BsaJI CCNNGG 2 cut(s) 300, 788
BsaWI WCCGGW 2 cut(s) 426, 1194
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 1068
Bse1I ACTGG 1 cut(s) 688
Bse3DI GCAATG 2 cut(s) 1183, 1238
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 300, 788
BseGI GGATG 2 cut(s) 593, 1132
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 433, 1068
BseMI GCAATG 2 cut(s) 1183, 1238
BseMII CTCAG 4 cut(s) 252, 258, 696, 1002
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 2 cut(s) 182, 1028
BseXI GCAGC 3 cut(s) 729, 757, 811
Bsh1236I CGCG 1 cut(s) 790
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 920
BsiEI CGRYCG 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 1202
BsiSI CCGG 2 cut(s) 427, 1195
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 433, 1068
BsmAI GTCTC 5 cut(s) 319, 431, 821, 887, 1199
BsmBI CGTCTC 2 cut(s) 431, 821
BsmFI GGGAC 1 cut(s) 951
BsmI GAATGC 2 cut(s) 544, 1188
BsnI GGCC 1 cut(s) 920
Bso31I GGTCTC 1 cut(s) 1199
BsoBI CYCGRG 1 cut(s) 1202
Bsp143I GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 4 cut(s) 788, 790, 861, 878
BspANI GGCC 1 cut(s) 920
BspCNI CTCAG 4 cut(s) 253, 259, 697, 1003
BspFNI CGCG 1 cut(s) 790
BspMAI CTGCAG 1 cut(s) 747
BspPI GGATC 3 cut(s) 134, 450, 601
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 1183, 1238
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 2 cut(s) 300, 788
BssMI GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
BssNAI GTATAC 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 5 cut(s) 53, 184, 535, 659, 832
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 5 cut(s) 285, 389, 740, 838, 1047
BstDEI CTNAG 8 cut(s) 261, 267, 273, 279, 705, 770, 1011, 1041
BstDSI CCRYGG 2 cut(s) 300, 788
BstF5I GGATG 2 cut(s) 593, 1132
BstFNI CGCG 1 cut(s) 790
BstKTI GATC 9 cut(s) 129, 338, 445, 493, 609, 759, 913, 964, 1213
BstMAI GTCTC 5 cut(s) 319, 431, 821, 887, 1199
BstMBI GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 8 cut(s) 103, 393, 796, 799, 995, 1016, 1145, 1161
BstNI CCWGG 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 579
BstPAI GACNNNNGTC 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 1 cut(s) 790
BstV1I GCAGC 3 cut(s) 729, 757, 811
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
BstZ17I GTATAC 1 cut(s) 538
BsuRI GGCC 1 cut(s) 920
BtgI CCRYGG 2 cut(s) 300, 788
BtrI CACGTC 1 cut(s) 950
BtsCI GGATG 2 cut(s) 593, 1132
Cac8I GCNNGC 5 cut(s) 285, 389, 740, 838, 1047
Cfr42I CCGCGG 1 cut(s) 791
CseI GACGC 2 cut(s) 161, 233
CsiI ACCWGGT 1 cut(s) 290
Csp6I GTAC 1 cut(s) 85
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 8 cut(s) 261, 267, 273, 279, 705, 770, 1011, 1041
DpnI GATC 9 cut(s) 128, 337, 444, 492, 608, 758, 912, 963, 1212
DpnII GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 1199
Eco57I CTGAAG 2 cut(s) 56, 587
Eco88I CYCGRG 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 431, 821
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 312, 344
FaqI GGGAC 1 cut(s) 951
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 743, 746, 791, 800
FokI GGATG 2 cut(s) 580, 1139
Fsp4HI GCNGC 4 cut(s) 743, 746, 791, 800
FspBI CTAG 4 cut(s) 519, 729, 990, 1035
GluI GCNGC 4 cut(s) 743, 746, 791, 800
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 1 cut(s) 920
HapII CCGG 2 cut(s) 427, 1195
HgaI GACGC 2 cut(s) 161, 233
HincII GTYRAC 2 cut(s) 244, 655
HindII GTYRAC 2 cut(s) 244, 655
HindIII AAGCTT 2 cut(s) 104, 203
HinfI GANTC 2 cut(s) 566, 612
HpaII CCGG 2 cut(s) 427, 1195
HphI GGTGA 2 cut(s) 671, 751
Hpy166II GTNNAC 3 cut(s) 244, 538, 655
Hpy188I TCNGA 4 cut(s) 36, 606, 611, 850
Hpy188III TCNNGA 5 cut(s) 140, 221, 479, 940, 1204
Hpy8I GTNNAC 3 cut(s) 244, 538, 655
Hpy99I CGWCG 3 cut(s) 177, 515, 933
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 5 cut(s) 53, 184, 535, 659, 832
HpyCH4IV ACGT 1 cut(s) 949
HpyCH4V TGCA 9 cut(s) 161, 287, 351, 420, 579, 745, 998, 1049, 1188
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 393, 796, 799, 995, 1016, 1145, 1161
HpyF3I CTNAG 8 cut(s) 261, 267, 273, 279, 705, 770, 1011, 1041
HpySE526I ACGT 1 cut(s) 949
Ksp22I TGATCA 1 cut(s) 756
KspI CCGCGG 1 cut(s) 791
Kzo9I GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 3 cut(s) 729, 757, 811
LweI GCATC 1 cut(s) 976
MabI ACCWGGT 1 cut(s) 290
MaeI CTAG 4 cut(s) 519, 729, 990, 1035
MaeII ACGT 1 cut(s) 949
MaeIII GTNAC 1 cut(s) 256
MalI GATC 9 cut(s) 128, 337, 444, 492, 608, 758, 912, 963, 1212
MboI GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
MboII GAAGA 2 cut(s) 49, 130
MflI RGATCY 1 cut(s) 606
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 3 cut(s) 294, 934, 1053
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 4 cut(s) 57, 108, 873, 1245
MslI CAYNNNNRTG 2 cut(s) 483, 764
MspA1I CMGCKG 1 cut(s) 790
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 2 cut(s) 427, 1195
MspR9I CCNGG 1 cut(s) 292
Mva1269I GAATGC 2 cut(s) 544, 1188
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 790
MwoI GCNNNNNNNGC 8 cut(s) 103, 393, 796, 799, 995, 1016, 1145, 1161
NcoI CCATGG 1 cut(s) 300
NdeII GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 579
OliI CACNNNNGTG 1 cut(s) 764
PaeR7I CTCGAG 1 cut(s) 1202
PctI GAATGC 2 cut(s) 544, 1188
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 1 cut(s) 612
PkrI GCNGC 4 cut(s) 744, 747, 792, 801
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PshAI GACNNNNGTC 1 cut(s) 519
PshBI ATTAAT 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 2 cut(s) 483, 764
SacII CCGCGG 1 cut(s) 791
SaqAI TTAA 4 cut(s) 57, 108, 873, 1245
SatI GCNGC 4 cut(s) 743, 746, 791, 800
Sau3AI GATC 9 cut(s) 126, 335, 442, 490, 606, 756, 910, 961, 1210
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 292
SexAI ACCWGGT 1 cut(s) 290
SfaNI GCATC 1 cut(s) 976
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 1 cut(s) 1202
Sfr303I CCGCGG 1 cut(s) 791
SgrBI CCGCGG 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 2 cut(s) 483, 764
SmlI CTYRAG 3 cut(s) 107, 219, 1202
SmoI CTYRAG 3 cut(s) 107, 219, 1202
SpeI ACTAGT 1 cut(s) 518
SsiI CCGC 4 cut(s) 788, 790, 861, 878
SspI AATATT 2 cut(s) 195, 822
SspMI CTAG 4 cut(s) 519, 729, 990, 1035
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 5 cut(s) 53, 184, 535, 659, 832
TaiI ACGT 1 cut(s) 952
TaqI TCGA 5 cut(s) 175, 699, 909, 928, 1203
TaqII GACCGA 1 cut(s) 1223
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 4 cut(s) 57, 108, 873, 1245
Tru9I TTAA 4 cut(s) 57, 108, 873, 1245
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 742, 745, 799
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 131, 398, 519, 1166
TspGWI ACGGA 1 cut(s) 455
Vha464I CTTAAG 1 cut(s) 107
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 42, 359
XceI RCATGY 1 cut(s) 579
XcmI CCANNNNNNNNNTGG 2 cut(s) 298, 1069
XhoI CTCGAG 1 cut(s) 1202
XmiI GTMKAC 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 4 cut(s) 519, 729, 990, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.