Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018182

Physical Location & Seq

Genomic Coordinates Forward (+)

9741069 .. 9745521

Gene Structure 4453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGTCTGAATTAATTCATTCAGACAACAGTTATTATGTGATGTTGTCCAAGTGGAAGGCTCGAACTCTTCACTCTTGGTTTGCTCTCTTCGACTCTTCCTCAAGTTGTGATTCTGTGAAGCTCGGTGACTCAAGCTTGGAGAAATTTGTGTTCGATTTCTGGAATCATGGAAGCATTGCTCTTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTAAACTGAGAAAGTGTGAAGAGGCTGGAGTCTCTTGTGGAAATGAAACTGATTGGAATTTGAGAAGTGAATCGATCAGACTTCCCTTAATCAAAGGTTCGATCTTTCTCAGTATGGTCTTCTTTTACAACATTGGTATATCCTTGTCTGCTGCATGGACTCAATTCCTTTGTATGTTTACAGATAATTGTAGTAAAAAGAGATTGCTTCTGGCTCACAGTGACATGTTGGAGTGGAATGCTAAGCTTGTCCAGGGACTACTGACTTATGGCATTGAGATAGACAACAGCAAAGTATATAATCAGACGACAGTGAAAAACTGTCGTCTGATTGAAAAATTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

222

Amino Acids

25.15

Weight (kDa)

7.59

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0394081 RchiOBHm_Chr7g0228251
rosa_laevigata	RLG00000001511
rosa_roxburghii	Rroxscaffold_2G00102710 Rroxscaffold_3G00230330
rosa_rugosa	Rorug07G0247300
rosa_samantha	Rh1DG176400 Rh7CG427600
rosa_wichuraiana	Rw2G028650 Rw7G033350 Rw7G033940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	146, 379
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	235, 289, 656
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	5 cut(s)	124, 138, 314, 323, 568
AluI	AGCT	5 cut(s)	124, 138, 314, 323, 568
Alw26I	GTCTC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	146, 379
AseI	ATTAAT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	140, 198, 260
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	474
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	3 cut(s)	181, 201, 369
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	88, 118
Bsa29I	ATCGAT	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	320, 445
BseXI	GCAGC	1 cut(s)	460
BshVI	ATCGAT	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	396, 423
Bsp1720I	GCTNAGC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	321, 444
BspDI	ATCGAT	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	2 cut(s)	396, 423
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	5 cut(s)	32, 256, 542, 634, 644
Bst6I	CTCTTC	4 cut(s)	75, 95, 103, 336
BstDEI	CTNAG	3 cut(s)	329, 431, 564
BstKTI	GATC	2 cut(s)	399, 426
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	396, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	547, 639
ClaI	ATCGAT	1 cut(s)	395
CviAII	CATG	3 cut(s)	170, 477, 547
CviJI	RGCY	8 cut(s)	62, 124, 138, 314, 323, 347, 536, 568
CviKI_1	RGCY	8 cut(s)	62, 124, 138, 314, 323, 347, 536, 568
DdeI	CTNAG	3 cut(s)	329, 431, 564
DpnI	GATC	2 cut(s)	398, 425
DpnII	GATC	2 cut(s)	396, 423
Eam1104I	CTCTTC	4 cut(s)	75, 95, 103, 336
EarI	CTCTTC	4 cut(s)	75, 95, 103, 336
EcoRII	CCWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	173, 480, 550
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	3 cut(s)	169, 476, 546
Fnu4HI	GCNGC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	474
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	3 cut(s)	181, 201, 369
Hin1II	CATG	3 cut(s)	173, 480, 550
HindIII	AAGCTT	2 cut(s)	136, 566
HinfI	GANTC	7 cut(s)	95, 113, 131, 166, 351, 392, 481
HphI	GGTGA	3 cut(s)	140, 198, 260
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	5 cut(s)	10, 25, 401, 627, 651
Hpy188III	TCNNGA	3 cut(s)	163, 198, 218
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	5 cut(s)	32, 256, 542, 634, 644
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	329, 431, 564
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	173, 480, 550
Kzo9I	GATC	2 cut(s)	396, 423
LpnPI	CCDG	8 cut(s)	148, 211, 213, 231, 333, 518, 560, 587
Lsp1109I	GCAGC	1 cut(s)	460
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	128, 542
MalI	GATC	2 cut(s)	398, 425
MboI	GATC	2 cut(s)	396, 423
MboII	GAAGA	5 cut(s)	62, 82, 90, 353, 433
MluCI	AATT	8 cut(s)	11, 15, 146, 235, 379, 485, 508, 659
MlyI	GAGTC	4 cut(s)	89, 125, 360, 475
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	6 cut(s)	112, 219, 225, 288, 294, 337
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	14, 410
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	2 cut(s)	396, 423
NlaIII	CATG	3 cut(s)	173, 480, 550
NmuCI	GTSAC	2 cut(s)	128, 542
NspI	RCATGY	1 cut(s)	550
PciI	ACATGT	1 cut(s)	546
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	113, 166, 392
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	4 cut(s)	89, 125, 359, 475
PpsI	GAGTC	4 cut(s)	89, 125, 359, 475
PscI	ACATGT	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	14, 410
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	396, 423
SchI	GAGTC	4 cut(s)	89, 125, 360, 475
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	9 cut(s)	126, 140, 211, 226, 268, 316, 325, 421, 570
SmlI	CTYRAG	2 cut(s)	103, 133
SmoI	CTYRAG	2 cut(s)	103, 133
Sse9I	AATT	8 cut(s)	11, 15, 146, 235, 379, 485, 508, 659
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	5 cut(s)	32, 256, 542, 634, 644
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	5 cut(s)	64, 93, 156, 395, 422
TasI	AATT	8 cut(s)	11, 15, 146, 235, 379, 485, 508, 659
TfiI	GAWTC	3 cut(s)	113, 166, 392
Tru1I	TTAA	2 cut(s)	14, 410
Tru9I	TTAA	2 cut(s)	14, 410
TscAI	CASTG	2 cut(s)	547, 639
TseFI	GTSAC	2 cut(s)	128, 542
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	128, 542
TspDTI	ATGAA	2 cut(s)	8, 381
TspRI	CASTG	2 cut(s)	547, 639
VspI	ATTAAT	1 cut(s)	14
XapI	RAATTY	2 cut(s)	146, 379
XceI	RCATGY	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.