Rorug07G0247300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018182
Physical Location & Seq
Reverse (-)
22874486 .. 22876043
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0247300.1

Sequence Viewer

Length: 285 bp
ATGGGATTCCGGTTGCCTGGAATTGTTAACACCAAGAAAAGTCTTATTCAACCTCTATCTGCTGCTAAGACCTTAGATGTCCCGAAAGGTTATCTCGCAGTCTATGTAGGGAAGAAACAGATGAAGAGATTTGTAATCCCAGTATCATATTTGAACCAACCTCTGTTCCTGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCAATGGGTGGTCTCACAATTCCTTGCAGCGAAGACACCTTCCTTGATCTCACTTCCCGCCTCAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.45

Weight (kDa)

7.84

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 91 1.5e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018182)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0394081 RchiOBHm_Chr7g0228251
rosa_laevigata RLG00000001511
rosa_roxburghii Rroxscaffold_2G00102710 Rroxscaffold_3G00230330
rosa_rugosa Rorug07G0247300
rosa_samantha Rh1DG176400 Rh7CG427600
rosa_wichuraiana Rw2G028650 Rw7G033350 Rw7G033940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 50, 154
AjnI CCWGG 2 cut(s) 16, 168
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 62, 240
ApoI RAATTY 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 49, 252
BciT130I CCWGG 2 cut(s) 18, 170
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 2 cut(s) 63, 241
BlsI GCNGC 2 cut(s) 64, 242
Bme1390I CCNGG 2 cut(s) 18, 170
BmrFI CCNGG 2 cut(s) 18, 170
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 18, 170
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 49, 252
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 208, 259
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 140
BssMI GATC 2 cut(s) 208, 259
Bst2UI CCWGG 2 cut(s) 18, 170
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 4 cut(s) 66, 73, 179, 275
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 211, 262
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 208, 259
BstNI CCWGG 2 cut(s) 18, 170
BstSCI CCNGG 2 cut(s) 16, 168
BstV1I GCAGC 2 cut(s) 49, 252
BstV2I GAAGAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 283
CviJI RGCY 1 cut(s) 188
CviKI_1 RGCY 1 cut(s) 188
DdeI CTNAG 4 cut(s) 66, 73, 179, 275
DpnI GATC 2 cut(s) 210, 261
DpnII GATC 2 cut(s) 208, 259
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 16, 168
FaiI YATR 2 cut(s) 105, 148
FaqI GGGAC 1 cut(s) 65
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 63, 241
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 63, 241
GluI GCNGC 2 cut(s) 63, 241
HapII CCGG 1 cut(s) 10
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 6, 181
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 4 cut(s) 66, 73, 179, 275
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 208, 259
LpnPI CCDG 6 cut(s) 3, 23, 30, 153, 155, 182
Lsp1109I GCAGC 2 cut(s) 49, 252
MalI GATC 2 cut(s) 210, 261
MboI GATC 2 cut(s) 208, 259
MboII GAAGA 5 cut(s) 124, 136, 203, 206, 257
MluCI AATT 3 cut(s) 21, 197, 231
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 3 cut(s) 63, 171, 284
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 18, 170
MvaI CCWGG 2 cut(s) 18, 170
NdeII GATC 2 cut(s) 208, 259
PfeI GAWTC 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 64, 242
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 16, 168
PspGI CCWGG 2 cut(s) 16, 168
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 63, 241
Sau3AI GATC 2 cut(s) 208, 259
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 18, 170
SetI ASST 6 cut(s) 55, 74, 91, 163, 190, 254
Sse9I AATT 3 cut(s) 21, 197, 231
SsiI CCGC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 16, 168
TasI AATT 3 cut(s) 21, 197, 231
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 283
TseI GCWGC 2 cut(s) 62, 240
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.