Rw2G028650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018182
Physical Location & Seq
Reverse (-)
45975855 .. 45977715
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028650.1

Sequence Viewer

Length: 363 bp
ATGCGGATTATCAAGTGGTGGCTTAAAAACATAGGCAACAAATGTCTCCAGGCTACATTTATAAACCACTTTGAAGCTTCAAGGACCAAGAATGGCATTGGAGTTATCAAGATCATTAAGTGCTACATAGGCATGATGGATTCTCAAGCGGTCGTACCACACCATAAAAGAAACTTGGTACCCATTGCCTTGGGTAGTCTCACAGCTATAATTAAAGTCTGGTTGCTTGTCAATGATATGCAGAAAACGATGTTGAATGGTCATGACAATTTTAGAAAAGGTTGCAGGCATCCCTATGTGTATAAAAGTGGGAGGTCAGGCCTCAAACTCCCTAGACAAGGCAGGCCACAAATCAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.76

Weight (kDa)

10.6

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018182)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0394081 RchiOBHm_Chr7g0228251
rosa_laevigata RLG00000001511
rosa_roxburghii Rroxscaffold_2G00102710 Rroxscaffold_3G00230330
rosa_rugosa Rorug07G0247300
rosa_samantha Rh1DG176400 Rh7CG427600
rosa_wichuraiana Rw2G028650 Rw7G033350 Rw7G033940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 2 cut(s) 4, 149
AfaI GTAC 2 cut(s) 156, 180
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 74, 81, 256
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 2 cut(s) 77, 206
AluI AGCT 2 cut(s) 77, 206
Alw26I GTCTC 2 cut(s) 50, 203
AoxI GGCC 2 cut(s) 319, 344
Asp718I GGTACC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 84
AvaII GGWCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 178
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 50, 203
BfaI CTAG 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 321, 346
BshNI GGYRCC 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 50, 203
BsnI GGCC 2 cut(s) 321, 346
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 4, 149
BspANI GGCC 2 cut(s) 321, 346
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 287, 344
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 50, 203
BstMBI GATC 1 cut(s) 111
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 2 cut(s) 321, 346
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 287, 344
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 155, 179
CviAII CATG 2 cut(s) 133, 263
CviJI RGCY 6 cut(s) 22, 53, 77, 206, 321, 346
CviKI_1 RGCY 6 cut(s) 22, 53, 77, 206, 321, 346
CviQI GTAC 2 cut(s) 155, 179
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 136, 266
FatI CATG 2 cut(s) 132, 262
FokI GGATG 1 cut(s) 276
FspBI CTAG 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 2 cut(s) 321, 346
Hin1II CATG 2 cut(s) 136, 266
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 109, 263
HpyCH4V TGCA 2 cut(s) 241, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 136, 266
KpnI GGTACC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 35, 62, 205, 271, 303, 328
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 333
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MluCI AATT 2 cut(s) 210, 268
MnlI CCTC 2 cut(s) 306, 332
MseI TTAA 3 cut(s) 24, 117, 213
MslI CAYNNNNRTG 2 cut(s) 131, 294
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 111
NlaIII CATG 2 cut(s) 136, 266
NlaIV GGNNCC 1 cut(s) 180
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 321
PfeI GAWTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 2 cut(s) 156, 180
RsaNI GTAC 2 cut(s) 155, 179
RseI CAYNNNNRTG 2 cut(s) 131, 294
SaqAI TTAA 3 cut(s) 24, 117, 213
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 50
SetI ASST 4 cut(s) 79, 208, 283, 317
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 131, 294
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 2 cut(s) 210, 268
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 2 cut(s) 4, 149
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 189
TasI AATT 2 cut(s) 210, 268
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 24, 117, 213
Tru9I TTAA 3 cut(s) 24, 117, 213
VpaK11BI GGWCC 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 336
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.