Rroxscaffold_2G00102710

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
24957326 .. 24968937
11612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102710.1

Sequence Viewer

Length: 219 bp
ATGGTGGGGATTTGCTGTGCCATATCGGTGGCTTCGTTTCGGGTATTTGCATCCATGGAACTCTTCCACCGTAGCAAGACAATTTCTTCTCGCAAAAGGATATATATTTACATTCAGGCTAGGCAAAAAAGTCTCCGTGCTACATTTATAAACCACTTTGAAGCTTCAAGGACCGAGAATGGCATTGGAGTTATCAAGATCATTAAAAGTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.12

Weight (kDa)

10.66

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018182)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AgsI TTSAA 2 cut(s) 161, 168
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 171
AvaII GGWCC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 171
CviAII CATG 1 cut(s) 55
CviJI RGCY 3 cut(s) 32, 119, 164
CviKI_1 RGCY 3 cut(s) 32, 119, 164
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 23, 56, 103, 105, 149, 217
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 50, 215
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 120
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 55, 78
MluCI AATT 1 cut(s) 81
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PkrI GCNGC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 149
PspPI GGNCC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 171
SetI ASST 1 cut(s) 166
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 71
TaqII GACCGA 1 cut(s) 188
TasI AATT 1 cut(s) 81
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 171
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.