Rh7CG427600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018182
Physical Location & Seq
Forward (+)
55776173 .. 55781844
5672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG427600.1

Sequence Viewer

Length: 378 bp
ATGCAGAGTAAAAGGAGATTGCTTCTGGCTCACAGTGACATGTTGGAGTGGAATGCTAAGCTTATCAAGGGAGTACTGACTTCAAAGGTCGTGACTGGATTAACTAGTGAAGTAGGAGTTCATCCAATTGGATGTGCTTATGCAATTTCAGGGGGTAAGGGATTTGAAGATGCAAAATCAGTTGAAGTTAAGTGGTGGTTCAGTAACTGGAGCTCCAGGACTCTGTTGAGTGAGAAAAAGCAATTTCACAACAATTTGCTACAGTTACTTGATACAAAAACTGTCTGTTGTTCTCAGCAAAGGTGGCAGTCGAATGAACTTCTGAAGTCTGAGTTCATCCAAGCTGATTTTCTTATGCGGCATGTCGAGGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

9.1

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018182)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0394081 RchiOBHm_Chr7g0228251
rosa_laevigata RLG00000001511
rosa_roxburghii Rroxscaffold_2G00102710 Rroxscaffold_3G00230330
rosa_rugosa Rorug07G0247300
rosa_samantha Rh1DG176400 Rh7CG427600
rosa_wichuraiana Rw2G028650 Rw7G033350 Rw7G033940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 3 cut(s) 84, 167, 185
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 61, 213, 344
AluI AGCT 3 cut(s) 61, 213, 344
Alw21I GWGCWC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 207
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 217
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 359
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 360
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 199, 229
Bpu1102I GCTNAGC 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 2 cut(s) 100, 212
BseBI CCWGG 1 cut(s) 217
BseGI GGATG 3 cut(s) 121, 137, 336
BseMII CTCAG 2 cut(s) 308, 321
BseNI ACTGG 2 cut(s) 100, 212
BsiHKAI GWGCWC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 307, 322
BsrI ACTGG 2 cut(s) 100, 212
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 35, 264, 283
BstDEI CTNAG 3 cut(s) 57, 294, 330
BstF5I GGATG 3 cut(s) 121, 137, 336
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 43, 365
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 260
BtsCI GGATG 3 cut(s) 121, 137, 336
BtsIMutI CAGTG 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 40, 362
CviJI RGCY 5 cut(s) 29, 61, 213, 344, 372
CviKI_1 RGCY 5 cut(s) 29, 61, 213, 344, 372
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 57, 294, 330
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 2 cut(s) 43, 365
FaiI YATR 4 cut(s) 41, 141, 356, 363
FatI CATG 2 cut(s) 39, 361
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 3 cut(s) 108, 144, 323
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 105
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 199, 229
Hin1II CATG 2 cut(s) 43, 365
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 324, 331
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 35, 264, 283
HpyCH4V TGCA 3 cut(s) 4, 143, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 3 cut(s) 57, 294, 330
Hsp92II CATG 2 cut(s) 43, 365
LmnI GCTCC 2 cut(s) 210, 218
LpnPI CCDG 6 cut(s) 11, 81, 135, 193, 202, 229
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 4 cut(s) 35, 91, 203, 264
MboII GAAGA 1 cut(s) 179
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 4 cut(s) 126, 144, 242, 253
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 1 cut(s) 361
MseI TTAA 2 cut(s) 101, 189
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 43, 365
NmuCI GTSAC 2 cut(s) 35, 91
NspI RCATGY 2 cut(s) 43, 365
PciI ACATGT 1 cut(s) 39
PctI GAATGC 1 cut(s) 58
PfoI TCCNGGA 1 cut(s) 215
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 207
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 101, 189
SatI GCNGC 1 cut(s) 359
ScaI AGTACT 1 cut(s) 75
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 215
SetI ASST 5 cut(s) 63, 90, 215, 305, 346
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 4 cut(s) 126, 144, 242, 253
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 215
TaaI ACNGT 3 cut(s) 35, 264, 283
TaqI TCGA 2 cut(s) 311, 366
TasI AATT 4 cut(s) 126, 144, 242, 253
TatI WGTACW 1 cut(s) 73
TauI GCSGC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 101, 189
Tru9I TTAA 2 cut(s) 101, 189
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 35, 91
Tsp45I GTSAC 2 cut(s) 35, 91
TspDTI ATGAA 3 cut(s) 110, 325, 330
TspRI CASTG 1 cut(s) 40
XceI RCATGY 2 cut(s) 43, 365
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.