Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017709

Physical Location & Seq

Genomic Coordinates Reverse (-)

20689406 .. 20693857

Gene Structure 4452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3909 bp

ATGTCATTCCATGGTTTCGATCCTGGGGATCGTAACAACTGGTATCAGAGCCCACACCTGGGCCTTTTCCCGGCGAGTCCGGCGGCTTCCGGCGGTGGGATCTCCTGCGGGTATTACAACTCTCCTTATCACTCTTACGGTAGCTCTACCTGTGCGTTTACCCAATTTTCATCGCCACCTAACCCTTACCCACCATTGCAACTCAACCCTTCTGCAACCATCATCAATGGCCACATGTTCCCTCATCAGTTTCCTTTTATTGCTCAGCAGCCTCTCACCACCACTCCTCGCGACCCATACATCCCTACTTACCACTCACCTTATCCTAACCCAAATCTCTGGGTTCCTCTTTCAATTTCACAAAGCCATTCACATGAACCATCCATTCCCAGTGTTTATTCTCAGTTTGTCCCCACAAATACCATGACTACACAACCTATTTCCCATTCTGCTTCTCCGCCTCCAACTTGTGGGCAACCACATACAATTGCAGATCCAAAACCACTCTGTCCCATACCCGAGTACGACCGAATTTCTCTTGAACCTGATCGGTTGTATAATTGGGAGGTCCCAATTGTTGATTCTGGATGTTACTCTTTCACACCAGAGCATATGACCGCGCTTACGGGGGCTGAGAAACCACAATCGCCACAACGAGGTTCCAGTGAATTGAAAGTTCACAAAGATCACACAAATGCTAAGTTGTGTGAGATGCAAACTTCTTTTAAGAGTTCGATGGAGACCTTCATGTCTGAATTCAGGGGGGAGCTGCGGTTGTTAAGGTCATCGCAATCTCCGGTAATCCAAGTTGATAACACACCTCCTACGGTTGCTACGTCTCTTACGGCGTCGGGGAAGCCATCATCGTCAACTACGGCTACCTCTGGAGGTAGTATTCGAATCTCAGAACCAAATTTTAATCTATCACCTCATGAAGCAATATTGGATTTGAATAATGATATTTCTGTTGTGGTGGTGTCTGGAAGTAGTAATGAGGATAATATTGTTGTTGGTATGACTGAAAAACTTGTGTTGAATATTGATAAAAATACTGCTGGAGGTGGTACTGGAATGAAATTTTCTGGTAGTCACTGTAGTTATGTTGCCAAAAGTATATTGTGGAAGAATAATGCTCAATCCCATCGTTTCCCTCACACTAACTTTGGTAATGGATCATCTGTTGGGAATTTGCTTCTCTATTGTGAGGTTCATACTTCCATGGAAGTTGGCAACGGATTCTTGGATGATAATTTTGGTGAAGAAAATGTTTCTGTTGAAGACAGCTTTGAGAAAATGCAAATGAAGTCTGAAAAGGTGTTGGTCCTCCCTATGAGAAAAGTGATGCATGGAGCAGGTCGATATATTGGGTGGTTTCAACGTGCTTTTGGCATTTATATCTGCAATTTGTTTGACACGGGCCAGGCCTCAAGGGTATTGAAATTGGAGAGAGATATTTTGGACTATCTTTTGCATCACTTTTTTGATGTTTCTGCCAGAAAAGACGACCATAATACTAATGGATATTATGATCATTCCTCATCCTCTCAATCCATAATTGCCAATGTCCCAACTGCATTTCAATGCCCCAAAAGTGGACAGAAGCTTATTCACATGGCCGTTACACCTAACTATGCACTGAAGCGTCTATTGCATCAATGTTCCAGAAGTTGGATCAGCACCATCATATTCATATTCTTTTGCATTTCTGTTGAAAAAGCTATAGCTGATACTATGAAGTTAACATCTGAGTTTCTGGTAGGTTGTCTTGATGTGATTCCGGCGATTAAGAAGTATTTGAATGATAAAATTGAACCTTGGTTGGCTGGGATTTTTTGTGAAAATGGTTTCTTGCATGATAGTGATAGTAAATGGGCTGGCATTGTGACTAACAAAAAATTAGCAGATTTGGGAGCAAATTACAATGATCACCATTACCATTTAGGGTACTTTATTTATGTAATTCCAGTGACTTCTAAGATTGATCTAGCATGGAGGAAGAAGTATATGTCTCAAGCTTATTCTCTTGGCCAGAAACTCAATATTCAGCAGGGGTCTTCTTATTTTGGCATAGTTCCTGTCATTCTCAAAGAGGTTTTCAGCTTCTCTTCTGAAATGCATTGTTTCAGCCTCGTCCCTATAATTTTCAATGTTGGTATGGTGACTACTGTGCAACCCTTTAGCCTTGATTGGGGGTTTCAAGTTCATCAACTTTGGCCACCCTTGATGATGATGAGGTGTTTTTCTCTTCCACTGTCTCTCTTGGGTAATGATTATTTCAAGTCCACATTACTTATCACAGCTGTTACGGGATTTGACGTGGTTGCACTACATTTCCTTTGCCAAACTAAAGCTAGCTGCCACCCAAGAAGCTTCATTGTTGATGAATTTTTTGACTTTTTGAAAATCAATTCAAAGTTATCTTTTGTGAGGTACACATGTGATGCACTTCTTTCAAGTGATAATTGTGTAGGCTTTTTGACTAATATGCACAAGTTTTTTCAACACATGGTGGGACATGTTCACAAAGATGAGTTTTTCTTGGCAACGTGGTCTTCCACTTCTTGTCCTCCATTCCATGCCCTTGTGAAGAAATTGTTTCTTTTATCACCTGTGGTTGCTATCCATTCATTACAACCACTTTTGGCTGACATATTGAGAGATGATGCACAGCTTATCTTTGGAATTATGATGGTTGTTTCTATGAATGAGCTGATGTTTTTGAGGTCTAAGAAACAAGGGCTTCAAATTGGGTATAGTGATATTGATAATGGAAATTATTGTCCTTCTATGAGCTGTTCTCTTCACTTGCCTCATTTCATGATTACATGGTTTTTTGAATTCACTTCTGTAGCAATTGACTTTGGAGATCTTGCATTAATTCCCCCACAATACTTTTCAGTACCTATTATATTGTTGTTTAGAGTTGTACACTCTCAGGCAATTGAATTTGTGAAATCAAGCCATATACTACAGGGTCCCAATAGAGAAGCCCTGAGAACCTCTGCTACTTCTCATGTTGGTGTTCATCTATGTGCGCTACTACATACTTGGCAAGTTACAAATGATGAAAATGAAGCTACTGCTGTGGCATTTGCACTGATCAACTCTGTTGTTGCAGTGTGTATTCAGCTCAGCTCACGCAAGGCTGCCTTTGATACAGATATATATGTTGCAAGTGCGCTTGTTGACATGTATTCTAAGTGTGGTCTGTCTCTCAATTTTCAAGAGAAGGAAGCTTTCACTTACTTTGAGAAGATGAGGCAATATGAGATGTTTCCTACGCCATTCTCTTATGCTAATTTATGGAGTTGTTGTGCAAAGCTAGCTTCTTCATTCCAAGAGAAACAGATTACTACATTGACATTAATGAAAATTTCACTTGCCAAAGTGTTTGAAATTGAAAGTGATGGTGGGTTGTCACACAATTTGGAGAAGATGTGTTTGCTTATTGCTGGACATGAGTGGGCTGCTGATGTGATATCTTCAGATGTTCCTCTTCCTAGTGTGGATGACCTCGCAGACCAGCTTGTTGAAGTGCTTGATTTATTTGGTATAATTTTAACTACACCAACTTACCGGTTGTCGACTCCTTTTGTTACGGACGAATGGTTGGTTGAAGCAGATATGATCATTAAAGCAAGGCAAGAGAGGAGAATAGTTTTTGCTGAAGTTTTGGCTCAATTCCCTTTTCTTATATGTTTAAGGCCTGAGGGCATGCCTTATTTTAAGGGGGGAGGAATGTTAGGACTCTTGTTCTATAATTACATATTGTCATGGGCTAATGTGTTGAGCTACTTAAGTGGGCTGTGTTTCCAGCTTAGGCTTTCTATGTATATAGCTGATTGGACTCGGGTCGGGTCATCAGGTAAATTGGTGTGTCTAGGGATGTTTGCAAATAGAGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

1302

Amino Acids

145.52

Weight (kDa)

6.24

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	443 - 508	4.2e-07	3'-5' exonuclease
Glyco_hydro81C	PF17652	579 - 678	2.1e-14	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0017709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12460
rosa_chinensis	RchiOBHm_Chr4g0401881 RchiOBHm_Chr4g0402161 RchiOBHm_Chr6g0244351 RchiOBHm_Chr6g0269331
rosa_multiflora	Rmu_sc0004459.1_g000008 Rmu_sc0007380.1_g000010 Rmu_sc0008973.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066910 Rroxscaffold_5G00359100 Rroxscaffold_6G00404090
rosa_rugosa	Rorug04G0254100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	1343
AccB7I	CCANNNNNTGG	2 cut(s)	470, 1668
AccI	GTMKAC	1 cut(s)	3584
AccII	CGCG	2 cut(s)	291, 620
AciI	CCGC	6 cut(s)	83, 93, 108, 458, 618, 772
AclWI	GGATC	6 cut(s)	14, 36, 107, 488, 1180, 1679
AcoI	YGGCCR	4 cut(s)	229, 1614, 2026, 2213
AcsI	RAATTY	9 cut(s)	531, 755, 913, 1076, 1186, 2384, 2837, 2945, 3372
AcuI	CTGAAG	3 cut(s)	1658, 3468, 3687
AcyI	GRCGYC	1 cut(s)	848
AdeI	CACNNNGTG	1 cut(s)	2509
AfaI	GTAC	6 cut(s)	524, 1066, 1946, 2432, 2901, 2928
AfiI	CCNNNNNNNGG	9 cut(s)	58, 59, 70, 96, 470, 656, 1592, 1668, 2188
AflII	CTTAAG	1 cut(s)	3796
AflIII	ACRYGT	4 cut(s)	234, 2435, 2515, 3189
AgeI	ACCGGT	1 cut(s)	3576
AjiI	CACGTC	1 cut(s)	2317
AjnI	CCWGG	3 cut(s)	22, 57, 1419
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
Alw26I	GTCTC	5 cut(s)	734, 843, 2013, 2259, 3216
AlwI	GGATC	6 cut(s)	14, 36, 107, 488, 1180, 1679
Ama87I	CYCGRG	2 cut(s)	518, 3849
AoxI	GGCC	8 cut(s)	61, 229, 1417, 1422, 1614, 2026, 2213, 3704
ApeKI	GCWGC	5 cut(s)	268, 769, 2355, 3146, 3467
ApoI	RAATTY	9 cut(s)	531, 755, 913, 1076, 1186, 2384, 2837, 2945, 3372
AseI	ATTAAT	2 cut(s)	2876, 3365
AsiGI	ACCGGT	1 cut(s)	3576
AspLEI	GCGC	3 cut(s)	622, 3037, 3181
AspS9I	GGNCC	5 cut(s)	61, 568, 1321, 1417, 2975
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	7 cut(s)	268, 309, 918, 1268, 1919, 2170, 2598
AsuII	TTCGAA	1 cut(s)	898
AsuNHI	GCTAGC	2 cut(s)	2351, 3322
AvaI	CYCGRG	2 cut(s)	518, 3849
AvaII	GGWCC	3 cut(s)	568, 1321, 2975
AxyI	CCTNAGG	1 cut(s)	3708
BaeI	ACNNNNGTAYC	2 cut(s)	2422, 2455
BalI	TGGCCA	3 cut(s)	231, 2028, 2215
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	3 cut(s)	1284, 2046, 2544
BbvI	GCAGC	5 cut(s)	280, 756, 2342, 3133, 3454
BccI	CCATC	8 cut(s)	227, 388, 730, 868, 1149, 1688, 2683, 3401
BceAI	ACGGC	3 cut(s)	861, 891, 1601
BciT130I	CCWGG	3 cut(s)	24, 59, 1421
BclI	TGATCA	4 cut(s)	1528, 1924, 3099, 3627
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	5 cut(s)	734, 843, 2013, 2259, 3216
BfaI	CTAG	5 cut(s)	1985, 2352, 3323, 3501, 3881
BfmI	CTRYAG	4 cut(s)	1093, 1719, 2847, 2969
BfrI	CTTAAG	1 cut(s)	3796
BfuAI	ACCTGC	1 cut(s)	1343
BglII	AGATCT	1 cut(s)	2866
BisI	GCNGC	6 cut(s)	84, 269, 770, 2356, 3147, 3468
BlpI	GCTNAGC	2 cut(s)	264, 3131
BlsI	GCNGC	6 cut(s)	85, 270, 771, 2357, 3148, 3469
Bme1390I	CCNGG	4 cut(s)	24, 59, 71, 1421
Bme18I	GGWCC	3 cut(s)	568, 1321, 2975
BmeT110I	CYCGRG	2 cut(s)	518, 3849
BmgBI	CACGTC	1 cut(s)	2317
BmgT120I	GGNCC	5 cut(s)	61, 568, 1321, 1417, 2975
BmiI	GGNNCC	5 cut(s)	345, 570, 661, 2976, 2977
BmrFI	CCNGG	4 cut(s)	24, 59, 71, 1421
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	6 cut(s)	702, 1332, 1480, 1660, 2431, 2653
BmtI	GCTAGC	2 cut(s)	2355, 3326
BmuI	ACTGGG	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	3851
BpiI	GAAGAC	3 cut(s)	1284, 2046, 2544
BplI	GAGNNNNNCTC	2 cut(s)	2782, 2814
BpmI	CTGGAG	2 cut(s)	906, 1077
Bpu10I	CCTNAGC	1 cut(s)	3818
Bpu1102I	GCTNAGC	2 cut(s)	264, 3131
Bpu14I	TTCGAA	1 cut(s)	898
BpuEI	CTTGAG	2 cut(s)	1411, 1995
BpuMI	CCSGG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	5 cut(s)	10, 23, 58, 1218, 1814
BsaWI	WCCGGW	2 cut(s)	796, 3576
BsaXI	ACNNNNNCTCC	8 cut(s)	268, 298, 758, 788, 3298, 3328, 3422, 3452
Bsc4I	CCNNNNNNNGG	9 cut(s)	58, 59, 70, 96, 470, 656, 1592, 1668, 2188
Bse118I	RCCGGY	1 cut(s)	3576
Bse1I	ACTGG	5 cut(s)	44, 390, 663, 1072, 1964
Bse21I	CCTNAGG	1 cut(s)	3708
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	24, 59, 1421
BseDI	CCNNGG	5 cut(s)	10, 23, 58, 1218, 1814
BseGI	GGATG	7 cut(s)	300, 380, 593, 1249, 1538, 3514, 3891
BseLI	CCNNNNNNNGG	9 cut(s)	58, 59, 70, 96, 470, 656, 1592, 1668, 2188
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	9 cut(s)	278, 416, 624, 918, 1737, 2948, 2984, 3145, 3699
BseNI	ACTGG	5 cut(s)	44, 390, 663, 1072, 1964
BseRI	GAGGAG	2 cut(s)	276, 3664
BseXI	GCAGC	5 cut(s)	280, 756, 2342, 3133, 3454
BseYI	CCCAGC	1 cut(s)	1823
Bsh1236I	CGCG	2 cut(s)	291, 620
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	8 cut(s)	63, 231, 1419, 1424, 1616, 2028, 2215, 3706
BshTI	ACCGGT	1 cut(s)	3576
BsiEI	CGRYCG	1 cut(s)	529
BsiHKCI	CYCGRG	2 cut(s)	518, 3849
BsiSI	CCGG	6 cut(s)	71, 80, 90, 797, 1778, 3577
BslFI	GGGAC	7 cut(s)	395, 495, 554, 1550, 2117, 2526, 2961
BslI	CCNNNNNNNGG	9 cut(s)	58, 59, 70, 96, 470, 656, 1592, 1668, 2188
BsmAI	GTCTC	5 cut(s)	734, 843, 2013, 2259, 3216
BsmBI	CGTCTC	1 cut(s)	843
BsmFI	GGGAC	7 cut(s)	395, 495, 554, 1550, 2117, 2526, 2961
BsnI	GGCC	8 cut(s)	63, 231, 1419, 1424, 1616, 2028, 2215, 3706
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	2 cut(s)	518, 3849
Bsp119I	TTCGAA	1 cut(s)	898
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	2926
Bsp1720I	GCTNAGC	2 cut(s)	264, 3131
Bsp19I	CCATGG	2 cut(s)	10, 1218
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	6 cut(s)	83, 93, 108, 458, 618, 772
BspANI	GGCC	8 cut(s)	63, 231, 1419, 1424, 1616, 2028, 2215, 3706
BspCNI	CTCAG	9 cut(s)	277, 415, 625, 917, 1738, 2947, 2985, 3144, 3700
BspFNI	CGCG	2 cut(s)	291, 620
BspHI	TCATGA	2 cut(s)	931, 2817
BspLI	GGNNCC	5 cut(s)	345, 570, 661, 2976, 2977
BspMI	ACCTGC	1 cut(s)	1343
BspOI	GCTAGC	2 cut(s)	2355, 3326
BspPI	GGATC	6 cut(s)	14, 36, 107, 488, 1180, 1679
BspT104I	TTCGAA	1 cut(s)	898
BspTI	CTTAAG	1 cut(s)	3796
BspTNI	GGTCTC	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	3576
BsrGI	TGTACA	1 cut(s)	2926
BsrI	ACTGG	5 cut(s)	44, 390, 663, 1072, 1964
BssAI	RCCGGY	1 cut(s)	3576
BssECI	CCNNGG	5 cut(s)	10, 23, 58, 1218, 1814
BssNI	GRCGYC	1 cut(s)	848
BssT1I	CCWWGG	3 cut(s)	10, 1218, 1814
Bst2UI	CCWGG	3 cut(s)	24, 59, 1421
Bst4CI	ACNGT	5 cut(s)	140, 829, 1094, 2167, 2253
Bst6I	CTCTTC	4 cut(s)	2110, 2250, 2805, 3501
BstACI	GRCGYC	1 cut(s)	848
BstAFI	CTTAAG	1 cut(s)	3796
BstAUI	TGTACA	1 cut(s)	2926
BstBI	TTCGAA	1 cut(s)	898
BstC8I	GCNNGC	4 cut(s)	1876, 2353, 3324, 3716
BstDSI	CCRYGG	2 cut(s)	10, 1218
BstF5I	GGATG	7 cut(s)	300, 380, 593, 1249, 1538, 3514, 3891
BstFNI	CGCG	2 cut(s)	291, 620
BstHHI	GCGC	3 cut(s)	622, 3037, 3181
BstMAI	GTCTC	5 cut(s)	734, 843, 2013, 2259, 3216
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 1648, 3323, 3899
BstNI	CCWGG	3 cut(s)	24, 59, 1421
BstNSI	RCATGY	5 cut(s)	238, 2439, 2519, 3193, 3718
BstPAI	GACNNNNGTC	1 cut(s)	3851
BstSCI	CCNGG	4 cut(s)	22, 57, 69, 1419
BstSFI	CTRYAG	4 cut(s)	1093, 1719, 2847, 2969
BstUI	CGCG	2 cut(s)	291, 620
BstV1I	GCAGC	5 cut(s)	280, 756, 2342, 3133, 3454
BstV2I	GAAGAC	3 cut(s)	1284, 2046, 2544
BstX2I	RGATCY	3 cut(s)	99, 493, 2866
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	3 cut(s)	99, 493, 2866
Bsu36I	CCTNAGG	1 cut(s)	3708
BsuRI	GGCC	8 cut(s)	63, 231, 1419, 1424, 1616, 2028, 2215, 3706
BtgI	CCRYGG	2 cut(s)	10, 1218
BtgZI	GCGATG	2 cut(s)	156, 771
BtrI	CACGTC	1 cut(s)	2317
BtsCI	GGATG	7 cut(s)	300, 380, 593, 1249, 1538, 3514, 3891
BtsI	GCAGTG	1 cut(s)	3123
BtsIMutI	CAGTG	8 cut(s)	397, 670, 1090, 1634, 1971, 2249, 3095, 3123
BtuMI	TCGCGA	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	1343
Cac8I	GCNNGC	4 cut(s)	1876, 2353, 3324, 3716
CciI	TCATGA	2 cut(s)	931, 2817
CfoI	GCGC	3 cut(s)	622, 3037, 3181
Cfr10I	RCCGGY	1 cut(s)	3576
Cfr13I	GGNCC	5 cut(s)	61, 568, 1321, 1417, 2975
CseI	GACGC	2 cut(s)	837, 1631
Csp6I	GTAC	6 cut(s)	523, 1065, 1945, 2431, 2900, 2927
CspAI	ACCGGT	1 cut(s)	3576
CviQI	GTAC	6 cut(s)	523, 1065, 1945, 2431, 2900, 2927
DraIII	CACNNNGTG	1 cut(s)	2509
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	4 cut(s)	229, 1614, 2026, 2213
Eam1104I	CTCTTC	4 cut(s)	2110, 2250, 2805, 3501
EarI	CTCTTC	4 cut(s)	2110, 2250, 2805, 3501
EciI	GGCGGA	1 cut(s)	447
Eco130I	CCWWGG	3 cut(s)	10, 1218, 1814
Eco147I	AGGCCT	2 cut(s)	1424, 3706
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	734
Eco32I	GATATC	1 cut(s)	3480
Eco47I	GGWCC	3 cut(s)	568, 1321, 2975
Eco57I	CTGAAG	3 cut(s)	1658, 3468, 3687
Eco81I	CCTNAGG	1 cut(s)	3708
Eco88I	CYCGRG	2 cut(s)	518, 3849
EcoO109I	RGGNCCY	2 cut(s)	568, 2975
EcoRI	GAATTC	2 cut(s)	755, 2837
EcoRII	CCWGG	3 cut(s)	22, 57, 1419
EcoRV	GATATC	1 cut(s)	3480
EcoT14I	CCWWGG	3 cut(s)	10, 1218, 1814
EcoT22I	ATGCAT	2 cut(s)	1347, 2118
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	3 cut(s)	10, 1218, 1814
Esp3I	CGTCTC	1 cut(s)	843
FalI	AAGNNNNNCTT	2 cut(s)	3134, 3166
FaqI	GGGAC	7 cut(s)	395, 495, 554, 1550, 2117, 2526, 2961
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	612
FbaI	TGATCA	4 cut(s)	1528, 1924, 3099, 3627
FblI	GTMKAC	1 cut(s)	3584
Fnu4HI	GCNGC	6 cut(s)	84, 269, 770, 2356, 3147, 3468
FokI	GGATG	7 cut(s)	287, 367, 600, 1256, 1525, 3521, 3898
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	84, 269, 770, 2356, 3147, 3468
FspBI	CTAG	5 cut(s)	1985, 2352, 3323, 3501, 3881
GlaI	GCGC	3 cut(s)	621, 3036, 3180
GluI	GCNGC	6 cut(s)	84, 269, 770, 2356, 3147, 3468
GsaI	CCCAGC	1 cut(s)	1827
GsuI	CTGGAG	2 cut(s)	906, 1077
HaeIII	GGCC	8 cut(s)	63, 231, 1419, 1424, 1616, 2028, 2215, 3706
HapII	CCGG	6 cut(s)	71, 80, 90, 797, 1778, 3577
HgaI	GACGC	2 cut(s)	837, 1631
HhaI	GCGC	3 cut(s)	622, 3037, 3181
Hin1I	GRCGYC	1 cut(s)	848
Hin6I	GCGC	3 cut(s)	620, 3035, 3179
HinP1I	GCGC	3 cut(s)	620, 3035, 3179
HincII	GTYRAC	4 cut(s)	870, 1740, 3187, 3585
HindII	GTYRAC	4 cut(s)	870, 1740, 3187, 3585
HindIII	AAGCTT	4 cut(s)	1601, 2013, 2368, 3234
HinfI	GANTC	8 cut(s)	76, 581, 900, 1236, 1774, 3586, 3747, 3847
HpaI	GTTAAC	1 cut(s)	1740
HpaII	CCGG	6 cut(s)	71, 80, 90, 797, 1778, 3577
HphI	GGTGA	7 cut(s)	268, 309, 918, 1268, 1919, 2170, 2598
Hpy188I	TCNGA	7 cut(s)	48, 754, 907, 1309, 1747, 2110, 3487
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	4 cut(s)	219, 754, 2793, 3223
HpyCH4III	ACNGT	5 cut(s)	140, 829, 1094, 2167, 2253
HpyCH4IV	ACGT	4 cut(s)	836, 1378, 2316, 2546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 1648, 3323, 3899
HpySE526I	ACGT	4 cut(s)	836, 1378, 2316, 2546
Hsp92I	GRCGYC	1 cut(s)	848
HspAI	GCGC	3 cut(s)	620, 3035, 3179
KflI	GGGWCCC	1 cut(s)	2975
Ksp22I	TGATCA	4 cut(s)	1528, 1924, 3099, 3627
KspAI	GTTAAC	1 cut(s)	1740
LmnI	GCTCC	3 cut(s)	766, 1349, 1910
Lsp1109I	GCAGC	5 cut(s)	280, 756, 2342, 3133, 3454
LweI	GCATC	6 cut(s)	702, 1332, 1480, 1660, 2431, 2653
MaeI	CTAG	5 cut(s)	1985, 2352, 3323, 3501, 3881
MaeII	ACGT	4 cut(s)	836, 1378, 2316, 2546
MfeI	CAATTG	4 cut(s)	486, 573, 2853, 2940
MflI	RGATCY	3 cut(s)	99, 493, 2866
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	3 cut(s)	231, 2028, 2215
MluNI	TGGCCA	3 cut(s)	231, 2028, 2215
MlyI	GAGTC	4 cut(s)	85, 3580, 3741, 3841
MmeI	TCCRAC	2 cut(s)	488, 1649
Mox20I	TGGCCA	3 cut(s)	231, 2028, 2215
Mph1103I	ATGCAT	2 cut(s)	1347, 2118
MscI	TGGCCA	3 cut(s)	231, 2028, 2215
MslI	CAYNNNNRTG	7 cut(s)	372, 693, 1579, 1857, 2526, 3018, 3030
Msp20I	TGGCCA	3 cut(s)	231, 2028, 2215
MspA1I	CMGCKG	1 cut(s)	2300
MspCI	CTTAAG	1 cut(s)	3796
MspI	CCGG	6 cut(s)	71, 80, 90, 797, 1778, 3577
MspR9I	CCNGG	4 cut(s)	24, 59, 71, 1421
MunI	CAATTG	4 cut(s)	486, 573, 2853, 2940
MvaI	CCWGG	3 cut(s)	24, 59, 1421
MvnI	CGCG	2 cut(s)	291, 620
MwoI	GCNNNNNNNGC	4 cut(s)	80, 1648, 3323, 3899
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	2 cut(s)	10, 1218
NdeI	CATATG	1 cut(s)	612
NheI	GCTAGC	2 cut(s)	2351, 3322
NlaIV	GGNNCC	5 cut(s)	345, 570, 661, 2976, 2977
NmuCI	GTSAC	5 cut(s)	1088, 1882, 1966, 2158, 3417
NruI	TCGCGA	1 cut(s)	291
NsiI	ATGCAT	2 cut(s)	1347, 2118
NspI	RCATGY	5 cut(s)	238, 2439, 2519, 3193, 3718
NspV	TTCGAA	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	3718
PagI	TCATGA	2 cut(s)	931, 2817
PceI	AGGCCT	2 cut(s)	1424, 3706
PciI	ACATGT	4 cut(s)	234, 2435, 2515, 3189
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PfeI	GAWTC	4 cut(s)	581, 900, 1236, 1774
PflMI	CCANNNNNTGG	2 cut(s)	470, 1668
PinAI	ACCGGT	1 cut(s)	3576
PkrI	GCNGC	6 cut(s)	85, 270, 771, 2357, 3148, 3469
PleI	GAGTC	4 cut(s)	84, 3580, 3741, 3841
PpsI	GAGTC	4 cut(s)	84, 3580, 3741, 3841
PpuMI	RGGWCCY	2 cut(s)	568, 2975
PscI	ACATGT	4 cut(s)	234, 2435, 2515, 3189
PshAI	GACNNNNGTC	1 cut(s)	3851
PshBI	ATTAAT	2 cut(s)	2876, 3365
Psp5II	RGGWCCY	2 cut(s)	568, 2975
Psp6I	CCWGG	3 cut(s)	22, 57, 1419
PspFI	CCCAGC	1 cut(s)	1823
PspGI	CCWGG	3 cut(s)	22, 57, 1419
PspN4I	GGNNCC	5 cut(s)	345, 570, 661, 2976, 2977
PspPI	GGNCC	5 cut(s)	61, 568, 1321, 1417, 2975
PspPPI	RGGWCCY	2 cut(s)	568, 2975
PsrI	GAACNNNNNNTAC	2 cut(s)	2989, 3021
PsuI	RGATCY	3 cut(s)	99, 493, 2866
PvuII	CAGCTG	1 cut(s)	2300
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	6 cut(s)	524, 1066, 1946, 2432, 2901, 2928
RsaNI	GTAC	6 cut(s)	523, 1065, 1945, 2431, 2900, 2927
RseI	CAYNNNNRTG	7 cut(s)	372, 693, 1579, 1857, 2526, 3018, 3030
SalI	GTCGAC	1 cut(s)	3583
SatI	GCNGC	6 cut(s)	84, 269, 770, 2356, 3147, 3468
Sau96I	GGNCC	5 cut(s)	61, 568, 1321, 1417, 2975
SchI	GAGTC	4 cut(s)	85, 3580, 3741, 3841
ScrFI	CCNGG	4 cut(s)	24, 59, 71, 1421
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	6 cut(s)	702, 1332, 1480, 1660, 2431, 2653
SfcI	CTRYAG	4 cut(s)	1093, 1719, 2847, 2969
SfuI	TTCGAA	1 cut(s)	898
SinI	GGWCC	3 cut(s)	568, 1321, 2975
SmiMI	CAYNNNNRTG	7 cut(s)	372, 693, 1579, 1857, 2526, 3018, 3030
SmlI	CTYRAG	3 cut(s)	1426, 2010, 3796
SmoI	CTYRAG	3 cut(s)	1426, 2010, 3796
SphI	GCATGC	1 cut(s)	3718
SseBI	AGGCCT	2 cut(s)	1424, 3706
SsiI	CCGC	6 cut(s)	83, 93, 108, 458, 618, 772
SspI	AATATT	4 cut(s)	942, 1003, 1039, 2041
SspMI	CTAG	5 cut(s)	1985, 2352, 3323, 3501, 3881
StuI	AGGCCT	2 cut(s)	1424, 3706
StyD4I	CCNGG	4 cut(s)	22, 57, 69, 1419
StyI	CCWWGG	3 cut(s)	10, 1218, 1814
TaaI	ACNGT	5 cut(s)	140, 829, 1094, 2167, 2253
TaiI	ACGT	4 cut(s)	839, 1381, 2319, 2549
TaqI	TCGA	5 cut(s)	18, 734, 898, 1357, 3584
TaqII	GACCGA	1 cut(s)	543
TatI	WGTACW	1 cut(s)	2926
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	4 cut(s)	581, 900, 1236, 1774
TscAI	CASTG	8 cut(s)	397, 670, 1097, 1641, 1971, 2256, 3102, 3123
TseFI	GTSAC	5 cut(s)	1088, 1882, 1966, 2158, 3417
TseI	GCWGC	5 cut(s)	268, 769, 2355, 3146, 3467
Tsp45I	GTSAC	5 cut(s)	1088, 1882, 1966, 2158, 3417
TspGWI	ACGGA	2 cut(s)	1248, 3614
TspRI	CASTG	8 cut(s)	397, 670, 1097, 1641, 1971, 2256, 3102, 3123
Van91I	CCANNNNNTGG	2 cut(s)	470, 1668
Vha464I	CTTAAG	1 cut(s)	3796
VpaK11BI	GGWCC	3 cut(s)	568, 1321, 2975
VspI	ATTAAT	2 cut(s)	2876, 3365
XapI	RAATTY	9 cut(s)	531, 755, 913, 1076, 1186, 2384, 2837, 2945, 3372
XceI	RCATGY	5 cut(s)	238, 2439, 2519, 3193, 3718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1514
XmiI	GTMKAC	1 cut(s)	3584
XspI	CTAG	5 cut(s)	1985, 2352, 3323, 3501, 3881
Zsp2I	ATGCAT	2 cut(s)	1347, 2118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.