Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g12460 |
| rosa_chinensis | RchiOBHm_Chr4g0401881 RchiOBHm_Chr4g0402161 RchiOBHm_Chr6g0244351 RchiOBHm_Chr6g0269331 |
| rosa_multiflora | Rmu_sc0004459.1_g000008 Rmu_sc0007380.1_g000010 Rmu_sc0008973.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00066910 Rroxscaffold_5G00359100 Rroxscaffold_6G00404090 |
| rosa_rugosa | Rorug04G0254100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 360 |
| AflIII | ACRYGT | 1 cut(s) | 177 |
| AgsI | TTSAA | 4 cut(s) | 186, 212, 383, 389 |
| AluBI | AGCT | 6 cut(s) | 64, 118, 123, 224, 310, 314 |
| AluI | AGCT | 6 cut(s) | 64, 118, 123, 224, 310, 314 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw26I | GTCTC | 1 cut(s) | 204 |
| Alw44I | GTGCAC | 1 cut(s) | 20 |
| ApaLI | GTGCAC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 2 cut(s) | 134, 455 |
| ApoI | RAATTY | 1 cut(s) | 360 |
| AseI | ATTAAT | 1 cut(s) | 353 |
| AspLEI | GCGC | 1 cut(s) | 169 |
| AsuNHI | GCTAGC | 1 cut(s) | 310 |
| BaeGI | GKGCMC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 121, 442 |
| BccI | CCATC | 1 cut(s) | 389 |
| BcoDI | GTCTC | 1 cut(s) | 204 |
| BfaI | CTAG | 1 cut(s) | 311 |
| BisI | GCNGC | 2 cut(s) | 135, 456 |
| BlpI | GCTNAGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 2 cut(s) | 136, 457 |
| BmtI | GCTAGC | 1 cut(s) | 314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 119 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 286, 316, 410, 440 |
| BseMII | CTCAG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 1 cut(s) | 24 |
| BseXI | GCAGC | 2 cut(s) | 121, 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsmAI | GTCTC | 1 cut(s) | 204 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 1 cut(s) | 87 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 119 |
| BspCNI | CTCAG | 1 cut(s) | 132 |
| BspOI | GCTAGC | 1 cut(s) | 314 |
| BssMI | GATC | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstHHI | GCGC | 1 cut(s) | 169 |
| BstKTI | GATC | 1 cut(s) | 90 |
| BstMAI | GTCTC | 1 cut(s) | 204 |
| BstMBI | GATC | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 311 |
| BstNSI | RCATGY | 1 cut(s) | 181 |
| BstSLI | GKGCMC | 1 cut(s) | 24 |
| BstV1I | GCAGC | 2 cut(s) | 121, 442 |
| BtsI | GCAGTG | 1 cut(s) | 111 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 169 |
| CviAII | CATG | 3 cut(s) | 126, 178, 446 |
| CviJI | RGCY | 8 cut(s) | 64, 118, 123, 134, 224, 310, 314, 455 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 118, 123, 134, 224, 310, 314, 455 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 1 cut(s) | 89 |
| DpnII | GATC | 1 cut(s) | 87 |
| FaeI | CATG | 3 cut(s) | 129, 181, 449 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 53, 85, 122, 154 |
| FatI | CATG | 3 cut(s) | 125, 177, 445 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 456 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 456 |
| FspBI | CTAG | 1 cut(s) | 311 |
| GlaI | GCGC | 1 cut(s) | 168 |
| GluI | GCNGC | 2 cut(s) | 135, 456 |
| HhaI | GCGC | 1 cut(s) | 169 |
| Hin1II | CATG | 3 cut(s) | 129, 181, 449 |
| Hin6I | GCGC | 1 cut(s) | 167 |
| HinP1I | GCGC | 1 cut(s) | 167 |
| HindIII | AAGCTT | 1 cut(s) | 222 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| HpyAV | CCTTC | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 6 cut(s) | 22, 83, 104, 129, 161, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 311 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| Hsp92II | CATG | 3 cut(s) | 129, 181, 449 |
| HspAI | GCGC | 1 cut(s) | 167 |
| Kzo9I | GATC | 1 cut(s) | 87 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 442 |
| MaeI | CTAG | 1 cut(s) | 311 |
| MaeIII | GTNAC | 2 cut(s) | 42, 405 |
| MalI | GATC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 87 |
| MboII | GAAGA | 3 cut(s) | 253, 309, 433 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MluCI | AATT | 5 cut(s) | 205, 286, 360, 384, 412 |
| MmeI | TCCRAC | 1 cut(s) | 421 |
| MnlI | CCTC | 1 cut(s) | 240 |
| MseI | TTAA | 1 cut(s) | 353 |
| MslI | CAYNNNNRTG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 311 |
| NdeII | GATC | 1 cut(s) | 87 |
| NheI | GCTAGC | 1 cut(s) | 310 |
| NlaIII | CATG | 3 cut(s) | 129, 181, 449 |
| NmuCI | GTSAC | 1 cut(s) | 405 |
| NspI | RCATGY | 1 cut(s) | 181 |
| PciI | ACATGT | 1 cut(s) | 177 |
| PkrI | GCNGC | 2 cut(s) | 136, 457 |
| PscI | ACATGT | 1 cut(s) | 177 |
| PshBI | ATTAAT | 1 cut(s) | 353 |
| RseI | CAYNNNNRTG | 1 cut(s) | 17 |
| SaqAI | TTAA | 1 cut(s) | 353 |
| SatI | GCNGC | 2 cut(s) | 135, 456 |
| Sau3AI | GATC | 1 cut(s) | 87 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 6 cut(s) | 66, 120, 125, 226, 312, 316 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 17 |
| Sse9I | AATT | 5 cut(s) | 205, 286, 360, 384, 412 |
| SspMI | CTAG | 1 cut(s) | 311 |
| TasI | AATT | 5 cut(s) | 205, 286, 360, 384, 412 |
| Tru1I | TTAA | 1 cut(s) | 353 |
| Tru9I | TTAA | 1 cut(s) | 353 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 405 |
| TseI | GCWGC | 2 cut(s) | 134, 455 |
| Tsp45I | GTSAC | 1 cut(s) | 405 |
| TspDTI | ATGAA | 3 cut(s) | 74, 309, 371 |
| TspRI | CASTG | 1 cut(s) | 111 |
| VneI | GTGCAC | 1 cut(s) | 20 |
| VspI | ATTAAT | 1 cut(s) | 353 |
| XapI | RAATTY | 1 cut(s) | 360 |
| XceI | RCATGY | 1 cut(s) | 181 |
| XspI | CTAG | 1 cut(s) | 311 |