Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017709

Physical Location & Seq

Genomic Coordinates Forward (+)

39143306 .. 39150546

Gene Structure 7241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGTGATCTTGATCTAATTTCAGCAATTTTTAAGAAGTTTTTGAGTGATACAATTGAGCCTTGGTTTGATGGGACTTTTAGTGGGAATGGTTTCTTGCATGATAGTAAATGGGGTGGCATTGTGACTGAAAAAGGATTAGCAGATTTGGGAGCATATTATAATGATCACCATTACCATTTAGGGTACTTAATTTATGCTATTTCAGTGCTTTCTAAGATTGATCTAGCATGGGGGGAAGAAAATGGAATTCCCCTAGAATTACATGCCATACATAATGAGATTGTTGTCTTTCTTGATTGGATCATTGAGGTGTGGTTAGGTTTCAAAGAAGTGGCAAATATTGTTACAACACCTCACACTACCGTGGGAGTTTTTGATGCTGCCGATAATTCTAGCACCGGGAGCAGACTCGGAAAAGATATTACAAGGAATAGAGTTTTTCGAAGCTTACCAACACAAGTTCCTCCAACTTCAGTATTTTCTTCATTGGTTCTAGACAGCTCGGACGGATACCCTTGGACCTTTTCTTCACTATCATCCAGTAGTATCGCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

186

Amino Acids

20.49

Weight (kDa)

4.82

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	7 - 82	6.5e-18	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12460
rosa_chinensis	RchiOBHm_Chr4g0401881 RchiOBHm_Chr4g0402161 RchiOBHm_Chr6g0244351 RchiOBHm_Chr6g0269331
rosa_multiflora	Rmu_sc0004459.1_g000008 Rmu_sc0007380.1_g000010 Rmu_sc0008973.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066910 Rroxscaffold_5G00359100 Rroxscaffold_6G00404090
rosa_rugosa	Rorug04G0254100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	328
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	450, 504
AluI	AGCT	2 cut(s)	450, 504
AlwI	GGATC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	17, 161
AsuII	TTCGAA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	403
BfaI	CTAG	4 cut(s)	227, 257, 396, 497
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	370
Bpu14I	TTCGAA	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	62, 366, 518
Bse1I	ACTGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	62, 366, 518
BseGI	GGATG	1 cut(s)	539
BseJI	GATNNNNATC	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	7, 13, 166, 223, 303
BspPI	GGATC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	3 cut(s)	62, 366, 518
BssMI	GATC	5 cut(s)	7, 13, 166, 223, 303
BssT1I	CCWWGG	2 cut(s)	62, 518
Bst4CI	ACNGT	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	539
BstKTI	GATC	5 cut(s)	10, 16, 169, 226, 306
BstMBI	GATC	5 cut(s)	7, 13, 166, 223, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	101, 231, 266
CviJI	RGCY	3 cut(s)	61, 450, 504
CviKI_1	RGCY	3 cut(s)	61, 450, 504
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	9, 15, 168, 225, 305
DpnII	GATC	5 cut(s)	7, 13, 166, 223, 303
Eco130I	CCWWGG	2 cut(s)	62, 518
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	62, 518
ErhI	CCWWGG	2 cut(s)	62, 518
FaeI	CATG	3 cut(s)	104, 234, 269
FaiI	YATR	8 cut(s)	102, 157, 162, 198, 232, 267, 272, 276
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	100, 230, 265
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	4 cut(s)	227, 257, 396, 497
GluI	GCNGC	1 cut(s)	384
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	3 cut(s)	104, 234, 269
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	17, 161
Hpy188I	TCNGA	2 cut(s)	416, 508
Hpy188III	TCNNGA	3 cut(s)	11, 296, 497
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	104, 234, 269
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	7, 13, 166, 223, 303
LmnI	GCTCC	2 cut(s)	152, 405
LpnPI	CCDG	2 cut(s)	415, 556
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	4 cut(s)	227, 257, 396, 497
MaeIII	GTNAC	2 cut(s)	124, 346
MalI	GATC	5 cut(s)	9, 15, 168, 225, 305
MboI	GATC	5 cut(s)	7, 13, 166, 223, 303
MboII	GAAGA	3 cut(s)	251, 477, 522
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	7 cut(s)	18, 27, 54, 192, 249, 260, 391
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	3 cut(s)	304, 366, 477
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	33, 191
MslI	CAYNNNNRTG	2 cut(s)	311, 365
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	405
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	5 cut(s)	7, 13, 166, 223, 303
NlaIII	CATG	3 cut(s)	104, 234, 269
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	522
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	311, 365
SaqAI	TTAA	2 cut(s)	33, 191
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	5 cut(s)	7, 13, 166, 223, 303
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	6 cut(s)	315, 325, 358, 452, 506, 527
SfaNI	GCATC	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	311, 365
Sse9I	AATT	7 cut(s)	18, 27, 54, 192, 249, 260, 391
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	4 cut(s)	227, 257, 396, 497
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	2 cut(s)	62, 518
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	445
TasI	AATT	7 cut(s)	18, 27, 54, 192, 249, 260, 391
Tru1I	TTAA	2 cut(s)	33, 191
Tru9I	TTAA	2 cut(s)	33, 191
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	4 cut(s)	227, 257, 396, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.