Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007380.1

Orthogroup ID

OG0017709

Physical Location & Seq

Genomic Coordinates Reverse (-)

40301 .. 40843

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007380.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgtacaccttcatattcttttgcatttttgttgaaaaagctacagctgatactgtgaagttaacatctgagtttctggtaagttgtcttgatgtgattccagctattaagaagtatttgaatgataaaattaagccttggttggatgggactttttgtgggaatggtttcatacatgatagtaaatggggtggcattgtgactaagaaaggattagcagatttgggagcagattgcaatgatcaccattaccatttagggtactttatttatgttattccagtgatttctaagattgatctagcatgggggaagaagtatatgcctcaagcttattcccttgaccggaaacccaattttcagcaggggttttcttattttggcatagttcctgtcactctcatagaggttttcagctgctcttctgaaatgcattgttttagcctcgtcactataattttcaatgctggtattgcaactattgtgcaaccctttagccgtgattgggggtttcaagttcatcaactttgggcccacccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

180

Amino Acids

20.46

Weight (kDa)

7.03

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12460
rosa_chinensis	RchiOBHm_Chr4g0401881 RchiOBHm_Chr4g0402161 RchiOBHm_Chr6g0244351 RchiOBHm_Chr6g0269331
rosa_multiflora	Rmu_sc0004459.1_g000008 Rmu_sc0007380.1_g000010 Rmu_sc0008973.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066910 Rroxscaffold_5G00359100 Rroxscaffold_6G00404090
rosa_rugosa	Rorug04G0254100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	5, 263
AfiI	CCNNNNNNNGG	2 cut(s)	345, 505
AgsI	TTSAA	4 cut(s)	35, 121, 463, 515
AluBI	AGCT	5 cut(s)	41, 47, 104, 332, 417
AluI	AGCT	5 cut(s)	41, 47, 104, 332, 417
AoxI	GGCC	1 cut(s)	531
ApaI	GGGCCC	1 cut(s)	535
ApeKI	GCWGC	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	531, 532
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	531, 532
BmiI	GGNNCC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 505
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	345, 505
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	345, 505
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	241, 298
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	241, 298
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	3 cut(s)	69, 204, 291
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	244, 301
BstMBI	GATC	2 cut(s)	241, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	531, 532
Csp6I	GTAC	2 cut(s)	4, 262
CviAII	CATG	2 cut(s)	176, 306
CviJI	RGCY	9 cut(s)	41, 47, 104, 136, 332, 417, 444, 498, 533
CviKI_1	RGCY	9 cut(s)	41, 47, 104, 136, 332, 417, 444, 498, 533
CviQI	GTAC	2 cut(s)	4, 262
DdeI	CTNAG	3 cut(s)	69, 204, 291
DpnI	GATC	2 cut(s)	243, 300
DpnII	GATC	2 cut(s)	241, 298
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	2 cut(s)	179, 309
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	175, 305
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	2 cut(s)	179, 309
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	6, 63
Hpy188I	TCNGA	2 cut(s)	70, 427
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	6, 63
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	5 cut(s)	24, 237, 433, 476, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	3 cut(s)	69, 204, 291
Hsp92II	CATG	2 cut(s)	179, 309
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	241, 298
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	7 cut(s)	62, 114, 294, 350, 359, 405, 453
Lsp1109I	GCAGC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	199, 394, 448
MalI	GATC	2 cut(s)	243, 300
MboI	GATC	2 cut(s)	241, 298
MboII	GAAGA	2 cut(s)	325, 414
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	3 cut(s)	129, 355, 456
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	336, 400, 455
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	62, 108, 132
MspA1I	CMGCKG	2 cut(s)	47, 417
MspI	CCGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	2 cut(s)	241, 298
NlaIII	CATG	2 cut(s)	179, 309
NlaIV	GGNNCC	1 cut(s)	533
NmuCI	GTSAC	3 cut(s)	199, 394, 448
NsiI	ATGCAT	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	533
PspOMI	GGGCCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	531, 532
PvuII	CAGCTG	2 cut(s)	47, 417
RsaI	GTAC	2 cut(s)	5, 263
RsaNI	GTAC	2 cut(s)	4, 262
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	3 cut(s)	62, 108, 132
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	2 cut(s)	241, 298
Sau96I	GGNCC	2 cut(s)	531, 532
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	7 cut(s)	11, 43, 49, 106, 334, 411, 419
SfcI	CTRYAG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	129, 355, 456
SspMI	CTAG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	55
TasI	AATT	3 cut(s)	129, 355, 456
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	62, 108, 132
Tru9I	TTAA	3 cut(s)	62, 108, 132
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	3 cut(s)	199, 394, 448
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	3 cut(s)	199, 394, 448
TspDTI	ATGAA	2 cut(s)	160, 509
TspRI	CASTG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.