RchiOBHm_Chr4g0416101
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017247
Physical Location & Seq
Forward (+)
40934573 .. 40935573
1001 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGATTATACAGAAATGTTTCAGCACCACTCGGAAAAAGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATAGTTGGAGTTGGGCTCATGTCACTGGAACAACTTGGGGGTTCCTATGCAATAACATTTTACGCAAGTTCTATATTTGTAGATGCAGGTTTTCCAAGTGACATTGGAACTATATCATCGTCTCTCATTGAGATACCTGGTGTTGCACTGAGTGTGCTCTTAACAGACAAAGCTGGAAGACGACCACTTCTAATGGACCTCAACTTGTGGAAGGAGGTCACTCCCATTTTGGTGTACATTAGCTTGTTGGTAAGTATATTCCAACCAAATGACAAGCATTCCCCTTCTCTTTTCGATAGCGTCTTGCAGCCTAAAACCATTTCCAAAGTGGACAAAGAGCAGATCTTCAACTTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

5.22

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 8 - 91 3.4e-11 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24280 FvH4_2g24280
malus_domestica MD03G1272400.v1.1
prunus_persica Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora Rmu_sc0021497.1_g000001
rosa_roxburghii Rroxscaffold_7G00175420
rosa_samantha Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana Rw0G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 251, 321
AluI AGCT 2 cut(s) 251, 321
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bse1I ACTGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 204
BsmBI CGTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 96, 237
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 108
BssMI GATC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 227
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 101, 224
BveI ACCTGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 94, 251, 321, 388
CviKI_1 RGCY 4 cut(s) 94, 251, 321, 388
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
DraIII CACNNNGTG 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 1 cut(s) 100
FaiI YATR 8 cut(s) 9, 66, 80, 98, 126, 152, 191, 335
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 386
HgaI GACGC 1 cut(s) 367
Hin1II CATG 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 313, 409
Hpy188I TCNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 313, 409
HpyAV CCTTC 2 cut(s) 283, 372
HpyCH4V TGCA 4 cut(s) 128, 164, 224, 385
HpyF3I CTNAG 1 cut(s) 227
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 420
LpnPI CCDG 5 cut(s) 89, 150, 201, 228, 237
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 151
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 3 cut(s) 99, 176, 295
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 2 cut(s) 267, 415
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 96, 237
MmeI TCCRAC 2 cut(s) 64, 364
MnlI CCTC 2 cut(s) 286, 287
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 216
NdeII GATC 1 cut(s) 420
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 99, 176, 295
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 96, 237
SetI ASST 6 cut(s) 169, 217, 253, 279, 297, 323
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 308
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 214
TaqI TCGA 1 cut(s) 372
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 2 cut(s) 108, 231
TseFI GTSAC 3 cut(s) 99, 176, 295
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 3 cut(s) 99, 176, 295
TspRI CASTG 2 cut(s) 108, 231
VpaK11BI GGWCC 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.