RchiOBHm_Chr4g0420521

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015174
Physical Location & Seq
Forward (+)
46304022 .. 46306437
2416 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGGGCGACAAGAAGAAGAAGGCTACGTTGTTCATCCGACTTGTCTCAGCTGCTGGAACTGGATTTTTCTATGTCAAGAAGAAGCCTTCTAGGATGGTAGAGAAGCTTGAGTTCCGAAAATTTGACCCTCGGGTGAATCGCCATGTTCTATTTACAGAGGCAAAAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L33

Protein Analysis

57

Amino Acids

6.71

Weight (kDa)

10.65

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L33 PF00471 12 - 55 6.2e-11 Ribosomal protein L33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06320 AT5G18790
fragaria_vesca FvH4_4g16940 FvH4_4g16940
malus_domestica MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata RLG00000007754
rosa_roxburghii Rroxscaffold_5G00363140
rosa_samantha Rh4BG228900 Rh7DG318600
rosa_wichuraiana Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AluBI AGCT 2 cut(s) 50, 106
AluI AGCT 2 cut(s) 50, 106
Alw26I GTCTC 1 cut(s) 49
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 129
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 33, 99
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 59
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 33, 99
BstMAI GTCTC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 33, 99
CaiI CAGNNNCTG 1 cut(s) 53
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 23, 50, 85, 106
CviKI_1 RGCY 4 cut(s) 23, 50, 85, 106
DdeI CTNAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 129
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 72, 144
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 20, 106
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 136
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 38, 116
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 13, 96
HpyCH4IV ACGT 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 146
LpnPI CCDG 2 cut(s) 39, 45
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 26
MboII GAAGA 3 cut(s) 25, 28, 91
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 138, 151
MspA1I CMGCKG 1 cut(s) 50
NlaIII CATG 1 cut(s) 146
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 51
SetI ASST 3 cut(s) 29, 52, 108
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 90
TaiI ACGT 1 cut(s) 29
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 136
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 22
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.