RchiOBHm_Chr4g0422201

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017649
Physical Location & Seq
Reverse (-)
47902913 .. 47904364
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGGCAAACTTGTTCATCATCACCTGCTTCAGTTTGCTGCTCTTGGTGGTTTTGGTCTCGTCACCGGTAGCCTCTGTGCCTTTGGAGGTTGGTTTCTACCGGAAATCATGCCCCTCGGCCGAGACGATTGTGAGAGATACATTGAAGAAGGCAGCTGCAACCGATCCTGCCATAGCTGCTGCCCTCATCAGACTCCATTTCCACGATTGCTTTGTGAGGGGTTGCGATGCATCAATTTTGCTGGATTCTAAACCGGGGAAGCCAGCTGCAGAAAAAGAAAGCATGGGAAACAAAGGCGTCCAAGGCTTTGAGGTCATAGACGAAGCCAAGGCCAGGATAGAAGCTCAGTGCCCCAACACTGTCTCCTGTGCAGACATAATCACCTTCGCTGCCCGAGACAGTGTTTTCACCACCGGGGGAACTTACTATTCAGCCCCCGGAGGCCGCCGTGACGGAACGGTCTCGTTGGCTTCGGAAGTGATCAAAAACCTCCCTGATGCATTCTTCAACGCAACACAACTGAAGACCAACTTTGCAAGAAAAGGGTTGTCTCTAGAGGATATGGTGACACTCTCCGGAGCTCACTCAATTGGGGACTCACACTGCTCTTCCTTCTCAAAACGACTATACTCCTTTAACAAAACGCATGCACAAGACCCTGAGATAAATAAGGCTTATGGGGGGTACTTGAAATCCAAATGCCCTAATGTGAAAAATGGTGTTGACCCGGTTGTGGCTTTTGATCCTTTGACCCCAACTTTGCTTGATAACAACTACTATAAGAATTTGGTGAGTCACAAGGGGCTGTTGGCTTCGGACCAGGAGCTTTGGAGCAGTGACTTAACTAGGAAGATGGTGAAGTACCGCAGGAACCATCCGAGGAAATGGGGTTTGGAGTTTGCTGCTGCGATGGTGAAGATGGGTTCCATTGATGTGTTGGTTGGGAAACAAGGAGAGATCAGGAAGAACTGCAGGGCCGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.69

Weight (kDa)

9.03

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 288 3.1e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 32
AasI GACNNNNNNGTC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 2 cut(s) 445, 865
AclWI GGATC 2 cut(s) 158, 737
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 2 cut(s) 13, 542
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 686, 863
AfiI CCNNNNNNNGG 2 cut(s) 333, 733
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 3 cut(s) 145, 508, 691
AjnI CCWGG 2 cut(s) 332, 819
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 6 cut(s) 155, 176, 266, 344, 581, 826
AluI AGCT 6 cut(s) 155, 176, 266, 344, 581, 826
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 6 cut(s) 61, 116, 367, 390, 466, 555
AlwI GGATC 2 cut(s) 158, 737
Ama87I CYCGRG 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 4 cut(s) 117, 330, 442, 975
ApeKI GCWGC 9 cut(s) 37, 152, 155, 176, 179, 266, 389, 902, 905
ApoI RAATTY 1 cut(s) 784
ArsI GACNNNNNNTTYG 2 cut(s) 742, 774
AsiGI ACCGGT 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 817, 975
AsuC2I CCSGG 4 cut(s) 255, 415, 438, 728
AsuHPI GGTGA 8 cut(s) 13, 54, 373, 400, 577, 802, 868, 925
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 9 cut(s) 24, 142, 163, 164, 166, 253, 376, 889, 892
BccI CCATC 4 cut(s) 847, 882, 904, 913
BceAI ACGGC 2 cut(s) 432, 962
BciT130I CCWGG 2 cut(s) 334, 821
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 4 cut(s) 255, 415, 438, 728
BcoDI GTCTC 6 cut(s) 61, 116, 367, 390, 466, 555
BfaI CTAG 2 cut(s) 554, 846
BfmI CTRYAG 2 cut(s) 267, 970
BfuAI ACCTGC 1 cut(s) 32
Bme1390I CCNGG 6 cut(s) 255, 334, 415, 438, 728, 821
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 817, 975
BmiI GGNNCC 2 cut(s) 872, 925
BmrFI CCNGG 6 cut(s) 255, 334, 415, 438, 728, 821
BmsI GCATC 3 cut(s) 217, 239, 487
BpiI GAAGAC 1 cut(s) 530
BpuMI CCSGG 4 cut(s) 255, 415, 438, 728
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 61, 466
BsaJI CCNNGG 7 cut(s) 114, 254, 301, 327, 414, 436, 878
BsaWI WCCGGW 3 cut(s) 64, 99, 575
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 733
Bse118I RCCGGY 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 2 cut(s) 334, 821
BseDI CCNNGG 7 cut(s) 114, 254, 301, 327, 414, 436, 878
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 2 cut(s) 333, 733
BseMII CTCAG 2 cut(s) 359, 651
BseSI GKGCMC 1 cut(s) 353
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 9 cut(s) 24, 142, 163, 164, 166, 253, 376, 889, 892
BsgI GTGCAG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 119, 332, 444, 977
BshTI ACCGGT 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 7 cut(s) 65, 100, 254, 414, 438, 576, 728
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 333, 733
BsmAI GTCTC 6 cut(s) 61, 116, 367, 390, 466, 555
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 4 cut(s) 119, 332, 444, 977
Bso31I GGTCTC 2 cut(s) 61, 466
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 353, 583
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 4 cut(s) 163, 480, 742, 957
BspACI CCGC 2 cut(s) 445, 865
BspANI GGCC 4 cut(s) 119, 332, 444, 977
BspCNI CTCAG 2 cut(s) 358, 652
BspEI TCCGGA 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 872, 925
BspMAI CTGCAG 2 cut(s) 271, 974
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 2 cut(s) 158, 737
BspQI GCTCTTC 1 cut(s) 613
BspTNI GGTCTC 2 cut(s) 61, 466
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 7 cut(s) 114, 254, 301, 327, 414, 436, 878
BssMI GATC 4 cut(s) 163, 480, 742, 957
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 301, 327
Bst2UI CCWGG 2 cut(s) 334, 821
Bst4CI ACNGT 3 cut(s) 361, 401, 460
Bst6I CTCTTC 1 cut(s) 613
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 264, 648
BstDEI CTNAG 2 cut(s) 345, 660
BstF5I GGATG 1 cut(s) 874
BstKTI GATC 4 cut(s) 166, 483, 745, 960
BstMAI GTCTC 6 cut(s) 61, 116, 367, 390, 466, 555
BstMBI GATC 4 cut(s) 163, 480, 742, 957
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 176, 303
BstNI CCWGG 2 cut(s) 334, 821
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 6 cut(s) 253, 332, 413, 436, 726, 819
BstSFI CTRYAG 2 cut(s) 267, 970
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 9 cut(s) 24, 142, 163, 164, 166, 253, 376, 889, 892
BstV2I GAAGAC 1 cut(s) 530
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 4 cut(s) 119, 332, 444, 977
BtgZI GCGATG 2 cut(s) 240, 923
BtsCI GGATG 1 cut(s) 874
BtsI GCAGTG 2 cut(s) 601, 841
BtsIMutI CAGTG 5 cut(s) 353, 357, 406, 601, 841
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 264, 648
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 817, 975
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 685, 862
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 3 cut(s) 108, 283, 647
CviQI GTAC 2 cut(s) 685, 862
DdeI CTNAG 2 cut(s) 345, 660
DpnI GATC 4 cut(s) 165, 482, 744, 959
DpnII GATC 4 cut(s) 163, 480, 742, 957
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 581
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 301, 327
Eco24I GRGCYC 1 cut(s) 583
Eco31I GGTCTC 2 cut(s) 61, 466
Eco47I GGWCC 1 cut(s) 817
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 13, 542
Eco88I CYCGRG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 332, 819
EcoT14I CCWWGG 2 cut(s) 301, 327
EcoT22I ATGCAT 2 cut(s) 232, 502
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 301, 327
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 111, 286, 650
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 608
FatI CATG 3 cut(s) 107, 282, 646
FbaI TGATCA 1 cut(s) 480
FokI GGATG 1 cut(s) 861
FriOI GRGCYC 1 cut(s) 583
FspBI CTAG 2 cut(s) 554, 846
HaeIII GGCC 4 cut(s) 119, 332, 444, 977
HapII CCGG 7 cut(s) 65, 100, 254, 414, 438, 576, 728
HgaI GACGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 3 cut(s) 111, 286, 650
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HinfI GANTC 4 cut(s) 192, 245, 596, 793
HpaII CCGG 7 cut(s) 65, 100, 254, 414, 438, 576, 728
HphI GGTGA 8 cut(s) 13, 54, 373, 400, 577, 802, 868, 925
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 4 cut(s) 191, 475, 817, 879
Hpy188III TCNNGA 3 cut(s) 554, 576, 961
Hpy8I GTNNAC 1 cut(s) 724
HpyAV CCTTC 3 cut(s) 142, 394, 622
HpyCH4III ACNGT 3 cut(s) 361, 401, 460
HpyCH4V TGCA 8 cut(s) 158, 230, 269, 371, 500, 536, 650, 972
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 303
HpyF3I CTNAG 2 cut(s) 345, 660
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 3 cut(s) 111, 286, 650
Kpn2I TCCGGA 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 4 cut(s) 163, 480, 742, 957
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 3 cut(s) 578, 823, 831
Lsp1109I GCAGC 9 cut(s) 24, 142, 163, 164, 166, 253, 376, 889, 892
LweI GCATC 3 cut(s) 217, 239, 487
MaeI CTAG 2 cut(s) 554, 846
MaeIII GTNAC 5 cut(s) 60, 449, 565, 794, 836
MalI GATC 4 cut(s) 165, 482, 744, 959
MboI GATC 4 cut(s) 163, 480, 742, 957
MboII GAAGA 7 cut(s) 157, 496, 535, 600, 862, 928, 976
MfeI CAATTG 1 cut(s) 588
MhlI GDGCHC 2 cut(s) 353, 583
MluCI AATT 4 cut(s) 234, 588, 784, 982
MlyI GAGTC 3 cut(s) 186, 590, 802
Mph1103I ATGCAT 2 cut(s) 232, 502
MroI TCCGGA 1 cut(s) 575
MseI TTAA 3 cut(s) 636, 842, 985
MslI CAYNNNNRTG 1 cut(s) 932
MspA1I CMGCKG 2 cut(s) 155, 266
MspI CCGG 7 cut(s) 65, 100, 254, 414, 438, 576, 728
MspR9I CCNGG 6 cut(s) 255, 334, 415, 438, 728, 821
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 2 cut(s) 334, 821
MwoI GCNNNNNNNGC 2 cut(s) 176, 303
NciI CCSGG 4 cut(s) 255, 415, 438, 728
NdeII GATC 4 cut(s) 163, 480, 742, 957
NlaIII CATG 3 cut(s) 111, 286, 650
NlaIV GGNNCC 2 cut(s) 872, 925
NmeAIII GCCGAG 2 cut(s) 95, 145
NmuCI GTSAC 5 cut(s) 60, 449, 565, 794, 836
NsiI ATGCAT 2 cut(s) 232, 502
NspI RCATGY 1 cut(s) 650
PaeI GCATGC 1 cut(s) 650
PaqCI CACCTGC 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 64
PleI GAGTC 3 cut(s) 186, 590, 801
PpsI GAGTC 3 cut(s) 186, 590, 801
Psp124BI GAGCTC 1 cut(s) 583
Psp6I CCWGG 2 cut(s) 332, 819
PspGI CCWGG 2 cut(s) 332, 819
PspN4I GGNNCC 2 cut(s) 872, 925
PspPI GGNCC 2 cut(s) 817, 975
PstI CTGCAG 2 cut(s) 271, 974
PvuII CAGCTG 2 cut(s) 155, 266
RsaI GTAC 2 cut(s) 686, 863
RsaNI GTAC 2 cut(s) 685, 862
RseI CAYNNNNRTG 1 cut(s) 932
SacI GAGCTC 1 cut(s) 583
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 3 cut(s) 636, 842, 985
Sau3AI GATC 4 cut(s) 163, 480, 742, 957
Sau96I GGNCC 2 cut(s) 817, 975
SchI GAGTC 3 cut(s) 186, 590, 802
ScrFI CCNGG 6 cut(s) 255, 334, 415, 438, 728, 821
SduI GDGCHC 2 cut(s) 353, 583
SfaNI GCATC 3 cut(s) 217, 239, 487
SfcI CTRYAG 2 cut(s) 267, 970
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 1 cut(s) 932
SphI GCATGC 1 cut(s) 650
Sse9I AATT 4 cut(s) 234, 588, 784, 982
SsiI CCGC 2 cut(s) 445, 865
SspMI CTAG 2 cut(s) 554, 846
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 6 cut(s) 253, 332, 413, 436, 726, 819
StyI CCWWGG 2 cut(s) 301, 327
TaaI ACNGT 3 cut(s) 361, 401, 460
TasI AATT 4 cut(s) 234, 588, 784, 982
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 636, 842, 985
Tru9I TTAA 3 cut(s) 636, 842, 985
TscAI CASTG 5 cut(s) 353, 364, 406, 608, 841
TseFI GTSAC 5 cut(s) 60, 449, 565, 794, 836
TseI GCWGC 9 cut(s) 37, 152, 155, 176, 179, 266, 389, 902, 905
Tsp45I GTSAC 5 cut(s) 60, 449, 565, 794, 836
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 5 cut(s) 353, 364, 406, 608, 841
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 1 cut(s) 784
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XspI CTAG 2 cut(s) 554, 846
Zsp2I ATGCAT 2 cut(s) 232, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.