RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 149, 154 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| Alw21I | GWGCWC | 1 cut(s) | 162 |
| AlwI | GGATC | 2 cut(s) | 149, 154 |
| AoxI | GGCC | 1 cut(s) | 51 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| AspS9I | GGNCC | 2 cut(s) | 51, 112 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 162 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 47, 81 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 112 |
| BsaBI | GATNNNNATC | 1 cut(s) | 151 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 30, 60 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| Bse8I | GATNNNNATC | 1 cut(s) | 151 |
| BseGI | GGATG | 1 cut(s) | 99 |
| BseJI | GATNNNNATC | 1 cut(s) | 151 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 162 |
| Bsp143I | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspPI | GGATC | 2 cut(s) | 149, 154 |
| BssMI | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| BstF5I | GGATG | 1 cut(s) | 99 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstKTI | GATC | 5 cut(s) | 18, 139, 144, 149, 169 |
| BstMBI | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| BstX2I | RGATCY | 1 cut(s) | 146 |
| BstYI | RGATCY | 1 cut(s) | 146 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtsCI | GGATG | 1 cut(s) | 99 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| CfoI | GCGC | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 112 |
| CviJI | RGCY | 3 cut(s) | 43, 53, 80 |
| CviKI_1 | RGCY | 3 cut(s) | 43, 53, 80 |
| DpnI | GATC | 5 cut(s) | 17, 138, 143, 148, 168 |
| DpnII | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| FaiI | YATR | 3 cut(s) | 174, 180, 188 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| GlaI | GCGC | 1 cut(s) | 69 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HinfI | GANTC | 2 cut(s) | 152, 190 |
| Hpy188I | TCNGA | 4 cut(s) | 38, 141, 146, 151 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 2 cut(s) | 124, 132 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Kzo9I | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| LpnPI | CCDG | 1 cut(s) | 34 |
| MaeIII | GTNAC | 1 cut(s) | 181 |
| MalI | GATC | 5 cut(s) | 17, 138, 143, 148, 168 |
| MboI | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 1 cut(s) | 146 |
| MhlI | GDGCHC | 2 cut(s) | 45, 162 |
| MluCI | AATT | 1 cut(s) | 25 |
| MnlI | CCTC | 2 cut(s) | 16, 32 |
| MseI | TTAA | 1 cut(s) | 202 |
| MunI | CAATTG | 1 cut(s) | 25 |
| NdeII | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PfeI | GAWTC | 2 cut(s) | 152, 190 |
| PspPI | GGNCC | 2 cut(s) | 51, 112 |
| PsuI | RGATCY | 1 cut(s) | 146 |
| SaqAI | TTAA | 1 cut(s) | 202 |
| Sau3AI | GATC | 5 cut(s) | 15, 136, 141, 146, 166 |
| Sau96I | GGNCC | 2 cut(s) | 51, 112 |
| SduI | GDGCHC | 2 cut(s) | 45, 162 |
| SetI | ASST | 1 cut(s) | 114 |
| SgeI | CNNG | 6 cut(s) | 25, 31, 56, 61, 83, 141 |
| SinI | GGWCC | 1 cut(s) | 112 |
| Sse9I | AATT | 1 cut(s) | 25 |
| TaqI | TCGA | 2 cut(s) | 72, 107 |
| TasI | AATT | 1 cut(s) | 25 |
| TfiI | GAWTC | 2 cut(s) | 152, 190 |
| Tru1I | TTAA | 1 cut(s) | 202 |
| Tru9I | TTAA | 1 cut(s) | 202 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 22 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 1 cut(s) | 162 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |