RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 159 |
| AciI | CCGC | 1 cut(s) | 167 |
| AclWI | GGATC | 1 cut(s) | 213 |
| AcuI | CTGAAG | 1 cut(s) | 67 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjnI | CCWGG | 2 cut(s) | 129, 162 |
| AlwI | GGATC | 1 cut(s) | 213 |
| AoxI | GGCC | 3 cut(s) | 3, 51, 96 |
| AspS9I | GGNCC | 1 cut(s) | 51 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 136, 170 |
| BciT130I | CCWGG | 2 cut(s) | 131, 164 |
| BglII | AGATCT | 1 cut(s) | 184 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 164 |
| BmgT120I | GGNCC | 1 cut(s) | 51 |
| BmrFI | CCNGG | 2 cut(s) | 131, 164 |
| BsaBI | GATNNNNATC | 1 cut(s) | 228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 30, 60 |
| Bse8I | GATNNNNATC | 1 cut(s) | 228 |
| BseBI | CCWGG | 2 cut(s) | 131, 164 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseJI | GATNNNNATC | 1 cut(s) | 228 |
| BshFI | GGCC | 3 cut(s) | 5, 53, 98 |
| BsnI | GGCC | 3 cut(s) | 5, 53, 98 |
| Bsp143I | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| BspACI | CCGC | 1 cut(s) | 167 |
| BspANI | GGCC | 3 cut(s) | 5, 53, 98 |
| BspHI | TCATGA | 1 cut(s) | 226 |
| BspPI | GGATC | 1 cut(s) | 213 |
| BssMI | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 164 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstKTI | GATC | 6 cut(s) | 18, 75, 187, 208, 226, 232 |
| BstMBI | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstNI | CCWGG | 2 cut(s) | 131, 164 |
| BstSCI | CCNGG | 2 cut(s) | 129, 162 |
| BstX2I | RGATCY | 2 cut(s) | 184, 205 |
| BstYI | RGATCY | 2 cut(s) | 184, 205 |
| BsuRI | GGCC | 3 cut(s) | 5, 53, 98 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| CciI | TCATGA | 1 cut(s) | 226 |
| Cfr13I | GGNCC | 1 cut(s) | 51 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CviAII | CATG | 3 cut(s) | 100, 121, 227 |
| CviJI | RGCY | 4 cut(s) | 5, 43, 53, 98 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 43, 53, 98 |
| CviQI | GTAC | 1 cut(s) | 193 |
| DpnI | GATC | 6 cut(s) | 17, 74, 186, 207, 225, 231 |
| DpnII | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| Eco57I | CTGAAG | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 129, 162 |
| FaeI | CATG | 3 cut(s) | 103, 124, 230 |
| FaiI | YATR | 4 cut(s) | 101, 122, 176, 228 |
| FatI | CATG | 3 cut(s) | 99, 120, 226 |
| FauI | CCCGC | 1 cut(s) | 160 |
| FblI | GTMKAC | 1 cut(s) | 159 |
| FokI | GGATG | 1 cut(s) | 62 |
| HaeIII | GGCC | 3 cut(s) | 5, 53, 98 |
| Hin1II | CATG | 3 cut(s) | 103, 124, 230 |
| HincII | GTYRAC | 2 cut(s) | 139, 160 |
| HindII | GTYRAC | 2 cut(s) | 139, 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 160 |
| Hpy188I | TCNGA | 2 cut(s) | 38, 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 227 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 160 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyAV | CCTTC | 2 cut(s) | 88, 91 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 191 |
| HpyCH4V | TGCA | 1 cut(s) | 147 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpySE526I | ACGT | 2 cut(s) | 135, 191 |
| Hsp92II | CATG | 3 cut(s) | 103, 124, 230 |
| Kzo9I | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| LpnPI | CCDG | 7 cut(s) | 34, 83, 116, 143, 149, 176, 185 |
| MaeII | ACGT | 2 cut(s) | 135, 191 |
| MalI | GATC | 6 cut(s) | 17, 74, 186, 207, 225, 231 |
| MboI | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| MboII | GAAGA | 1 cut(s) | 194 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 2 cut(s) | 184, 205 |
| MluCI | AATT | 2 cut(s) | 25, 171 |
| MnlI | CCTC | 3 cut(s) | 16, 32, 172 |
| MseI | TTAA | 1 cut(s) | 110 |
| MspR9I | CCNGG | 2 cut(s) | 131, 164 |
| MunI | CAATTG | 1 cut(s) | 25 |
| MvaI | CCWGG | 2 cut(s) | 131, 164 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NdeII | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| NlaIII | CATG | 3 cut(s) | 103, 124, 230 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| PagI | TCATGA | 1 cut(s) | 226 |
| Psp6I | CCWGG | 2 cut(s) | 129, 162 |
| PspGI | CCWGG | 2 cut(s) | 129, 162 |
| PspPI | GGNCC | 1 cut(s) | 51 |
| PsuI | RGATCY | 2 cut(s) | 184, 205 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| SalI | GTCGAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 1 cut(s) | 110 |
| Sau3AI | GATC | 6 cut(s) | 15, 72, 184, 205, 223, 229 |
| Sau96I | GGNCC | 1 cut(s) | 51 |
| ScrFI | CCNGG | 2 cut(s) | 131, 164 |
| SetI | ASST | 2 cut(s) | 138, 194 |
| Sse9I | AATT | 2 cut(s) | 25, 171 |
| SsiI | CCGC | 1 cut(s) | 167 |
| StyD4I | CCNGG | 2 cut(s) | 129, 162 |
| TaiI | ACGT | 2 cut(s) | 138, 194 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TasI | AATT | 2 cut(s) | 25, 171 |
| Tru1I | TTAA | 1 cut(s) | 110 |
| Tru9I | TTAA | 1 cut(s) | 110 |
| TspDTI | ATGAA | 3 cut(s) | 22, 116, 137 |
| XmiI | GTMKAC | 1 cut(s) | 159 |