Rh4CG072300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0019404
Physical Location & Seq
Forward (+)
13318372 .. 13328332
9961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG072300.1

Sequence Viewer

Length: 423 bp
ATGACTCGGTTTTCGTTTCTCGCTATGTCCTCTGCCGAGATCAAGTTCAATTGTTTCATCAGAGGGCTCGTCAGAGCCACCGATAACGGTGCACTCGAAAGGACTTTCACTTTTGGCGAGATCATCCAATCGAAGAGTTCACATTCGTCTCTTGCTAATCTCTTCCATGTCGTTTTGCCAATCGATGGCATAAGCCCTAACATCATCACCTTCAGTAATAAGAAGGCCATGAAAGACTCGATCAAAGTCATGAACGGCCAGGACGTTGACGACTGCAACATCATCGTAGACCAGGCGGGAATTATAGAGGAAGATCTTATGTACTTGCTGGTGGATCTCGACTACACCAAAGATCATGATCGCCCTAGAACAAAACAGGTTGTTAACTGGGAGATTCTAGTGGACAAGAAAGAGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.86

Weight (kDa)

5.57

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019404)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281
rosa_roxburghii Rroxscaffold_1G00017400
rosa_samantha Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 296
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 258, 291
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 90
AlwI GGATC 1 cut(s) 342
AoxI GGCC 2 cut(s) 225, 256
ApaLI GTGCAC 1 cut(s) 90
ArsI GACNNNNNNTTYG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 4 cut(s) 71, 105, 265, 299
BciT130I CCWGG 2 cut(s) 260, 293
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 366, 398
BglII AGATCT 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 260, 293
BmrFI CCNGG 2 cut(s) 260, 293
BmrI ACTGGG 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 2 cut(s) 260, 293
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 94
BshFI GGCC 2 cut(s) 227, 258
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 2 cut(s) 227, 258
Bsp1286I GDGCHC 2 cut(s) 69, 94
Bsp143I GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
BspACI CCGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 227, 258
BspDI ATCGAT 1 cut(s) 183
BspHI TCATGA 2 cut(s) 249, 355
BspPI GGATC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 392
BssMI GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
Bst2UI CCWGG 2 cut(s) 260, 293
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 128, 167
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 7 cut(s) 42, 123, 243, 316, 337, 355, 361
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
BstNI CCWGG 2 cut(s) 260, 293
BstSCI CCNGG 2 cut(s) 258, 291
BstSLI GKGCMC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 313, 334
BstYI RGATCY 2 cut(s) 313, 334
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 2 cut(s) 227, 258
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 123
CciI TCATGA 2 cut(s) 249, 355
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 167, 229, 250, 356
CviJI RGCY 5 cut(s) 67, 77, 195, 227, 258
CviKI_1 RGCY 5 cut(s) 67, 77, 195, 227, 258
CviQI GTAC 1 cut(s) 322
DpnI GATC 7 cut(s) 41, 122, 242, 315, 336, 354, 360
DpnII GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 128, 167
EarI CTCTTC 2 cut(s) 128, 167
Eco24I GRGCYC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 258, 291
EcoT38I GRGCYC 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 4 cut(s) 170, 232, 253, 359
FaiI YATR 8 cut(s) 26, 168, 191, 230, 251, 305, 320, 357
FatI CATG 4 cut(s) 166, 228, 249, 355
FauI CCCGC 1 cut(s) 289
FblI GTMKAC 1 cut(s) 288
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 2 cut(s) 366, 398
HaeIII GGCC 2 cut(s) 227, 258
Hin1II CATG 4 cut(s) 170, 232, 253, 359
HincII GTYRAC 2 cut(s) 268, 385
HindII GTYRAC 2 cut(s) 268, 385
HinfI GANTC 3 cut(s) 4, 236, 394
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 6 cut(s) 92, 140, 268, 289, 385, 403
Hpy188I TCNGA 2 cut(s) 62, 74
Hpy188III TCNNGA 3 cut(s) 250, 338, 356
Hpy8I GTNNAC 6 cut(s) 92, 140, 268, 289, 385, 403
HpyAV CCTTC 2 cut(s) 217, 220
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 92, 276
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 4 cut(s) 170, 232, 253, 359
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
LpnPI CCDG 7 cut(s) 245, 272, 278, 305, 314, 362, 373
MaeI CTAG 2 cut(s) 366, 398
MaeII ACGT 1 cut(s) 264
MalI GATC 7 cut(s) 41, 122, 242, 315, 336, 354, 360
MboI GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
MboII GAAGA 3 cut(s) 145, 154, 323
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 2 cut(s) 313, 334
MhlI GDGCHC 2 cut(s) 69, 94
MluCI AATT 2 cut(s) 49, 300
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 3 cut(s) 40, 56, 301
MseI TTAA 1 cut(s) 384
MspR9I CCNGG 2 cut(s) 260, 293
MunI CAATTG 1 cut(s) 49
MvaI CCWGG 2 cut(s) 260, 293
NdeII GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
NlaIII CATG 4 cut(s) 170, 232, 253, 359
NmeAIII GCCGAG 1 cut(s) 61
PagI TCATGA 2 cut(s) 249, 355
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 261
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 185
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 258, 291
PspGI CCWGG 2 cut(s) 258, 291
PsuI RGATCY 2 cut(s) 313, 334
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 7 cut(s) 39, 120, 240, 313, 334, 352, 358
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 260, 293
SduI GDGCHC 2 cut(s) 69, 94
SetI ASST 3 cut(s) 212, 267, 381
Sse9I AATT 2 cut(s) 49, 300
SsiI CCGC 1 cut(s) 296
SspMI CTAG 2 cut(s) 366, 398
StyD4I CCNGG 2 cut(s) 258, 291
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 96, 131, 183, 239, 339
TasI AATT 2 cut(s) 49, 300
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 46, 245, 266
Van91I CCANNNNNTGG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 366, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.