No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AclWI | GGATC | 1 cut(s) | 114 |
| AcoI | YGGCCR | 1 cut(s) | 28 |
| AfaI | GTAC | 1 cut(s) | 95 |
| AjnI | CCWGG | 2 cut(s) | 30, 63 |
| AlwI | GGATC | 1 cut(s) | 114 |
| AoxI | GGCC | 1 cut(s) | 28 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 37, 71 |
| BciT130I | CCWGG | 2 cut(s) | 32, 65 |
| BglII | AGATCT | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 2 cut(s) | 32, 65 |
| BmrFI | CCNGG | 2 cut(s) | 32, 65 |
| BsaBI | GATNNNNATC | 1 cut(s) | 129 |
| Bse8I | GATNNNNATC | 1 cut(s) | 129 |
| BseBI | CCWGG | 2 cut(s) | 32, 65 |
| BseJI | GATNNNNATC | 1 cut(s) | 129 |
| Bsh1285I | CGRYCG | 1 cut(s) | 133 |
| BshFI | GGCC | 1 cut(s) | 30 |
| BsiEI | CGRYCG | 1 cut(s) | 133 |
| BsnI | GGCC | 1 cut(s) | 30 |
| Bsp143I | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspANI | GGCC | 1 cut(s) | 30 |
| BspPI | GGATC | 1 cut(s) | 114 |
| BssMI | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| Bst2UI | CCWGG | 2 cut(s) | 32, 65 |
| BstKTI | GATC | 5 cut(s) | 15, 88, 109, 127, 133 |
| BstMBI | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| BstMCI | CGRYCG | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 27 |
| BstNI | CCWGG | 2 cut(s) | 32, 65 |
| BstSCI | CCNGG | 2 cut(s) | 30, 63 |
| BstX2I | RGATCY | 2 cut(s) | 85, 106 |
| BstYI | RGATCY | 2 cut(s) | 85, 106 |
| BsuRI | GGCC | 1 cut(s) | 30 |
| Csp6I | GTAC | 1 cut(s) | 94 |
| CviAII | CATG | 1 cut(s) | 22 |
| CviJI | RGCY | 1 cut(s) | 30 |
| CviKI_1 | RGCY | 1 cut(s) | 30 |
| CviQI | GTAC | 1 cut(s) | 94 |
| DpnI | GATC | 5 cut(s) | 14, 87, 108, 126, 132 |
| DpnII | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| EaeI | YGGCCR | 1 cut(s) | 28 |
| EcoRII | CCWGG | 2 cut(s) | 30, 63 |
| FaeI | CATG | 1 cut(s) | 25 |
| FaiI | YATR | 2 cut(s) | 23, 77 |
| FatI | CATG | 1 cut(s) | 21 |
| FauI | CCCGC | 1 cut(s) | 61 |
| HaeIII | GGCC | 1 cut(s) | 30 |
| Hin1II | CATG | 1 cut(s) | 25 |
| HincII | GTYRAC | 2 cut(s) | 40, 61 |
| HindII | GTYRAC | 2 cut(s) | 40, 61 |
| HinfI | GANTC | 1 cut(s) | 8 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 61 |
| Hpy188I | TCNGA | 1 cut(s) | 90 |
| Hpy188III | TCNNGA | 1 cut(s) | 128 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 61 |
| HpyCH4IV | ACGT | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 1 cut(s) | 48 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 27 |
| HpySE526I | ACGT | 1 cut(s) | 36 |
| Hsp92II | CATG | 1 cut(s) | 25 |
| Kzo9I | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| LpnPI | CCDG | 5 cut(s) | 17, 44, 50, 77, 86 |
| MaeII | ACGT | 1 cut(s) | 36 |
| MalI | GATC | 5 cut(s) | 14, 87, 108, 126, 132 |
| MboI | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| MboII | GAAGA | 1 cut(s) | 95 |
| MflI | RGATCY | 2 cut(s) | 85, 106 |
| MluCI | AATT | 1 cut(s) | 72 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MnlI | CCTC | 1 cut(s) | 73 |
| MspR9I | CCNGG | 2 cut(s) | 32, 65 |
| MvaI | CCWGG | 2 cut(s) | 32, 65 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 27 |
| NdeII | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| NlaIII | CATG | 1 cut(s) | 25 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 33 |
| Ple19I | CGATCG | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Psp6I | CCWGG | 2 cut(s) | 30, 63 |
| PspGI | CCWGG | 2 cut(s) | 30, 63 |
| PsuI | RGATCY | 2 cut(s) | 85, 106 |
| PvuI | CGATCG | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 95 |
| RsaNI | GTAC | 1 cut(s) | 94 |
| Sau3AI | GATC | 5 cut(s) | 12, 85, 106, 124, 130 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 2 cut(s) | 32, 65 |
| SetI | ASST | 1 cut(s) | 39 |
| SgeI | CNNG | 9 cut(s) | 22, 34, 43, 44, 76, 77, 81, 109, 113 |
| Sse9I | AATT | 1 cut(s) | 72 |
| SsiI | CCGC | 1 cut(s) | 68 |
| StyD4I | CCNGG | 2 cut(s) | 30, 63 |
| TaiI | ACGT | 1 cut(s) | 39 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TasI | AATT | 1 cut(s) | 72 |
| TatI | WGTACW | 1 cut(s) | 93 |
| TspDTI | ATGAA | 2 cut(s) | 17, 38 |