RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 153 |
| AciI | CCGC | 1 cut(s) | 161 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AcoI | YGGCCR | 1 cut(s) | 121 |
| AcuI | CTGAAG | 1 cut(s) | 61 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AjnI | CCWGG | 3 cut(s) | 30, 123, 156 |
| AlwI | GGATC | 1 cut(s) | 207 |
| AoxI | GGCC | 2 cut(s) | 90, 121 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 64 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 130, 164 |
| BciT130I | CCWGG | 3 cut(s) | 32, 125, 158 |
| BglII | AGATCT | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 125, 158 |
| BmrFI | CCNGG | 3 cut(s) | 32, 125, 158 |
| BsaBI | GATNNNNATC | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| Bse8I | GATNNNNATC | 1 cut(s) | 222 |
| BseBI | CCWGG | 3 cut(s) | 32, 125, 158 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseJI | GATNNNNATC | 1 cut(s) | 222 |
| BshFI | GGCC | 2 cut(s) | 92, 123 |
| BsnI | GGCC | 2 cut(s) | 92, 123 |
| Bsp143I | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| BspACI | CCGC | 1 cut(s) | 161 |
| BspANI | GGCC | 2 cut(s) | 92, 123 |
| BspHI | TCATGA | 1 cut(s) | 220 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssMI | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| Bst2UI | CCWGG | 3 cut(s) | 32, 125, 158 |
| BstKTI | GATC | 7 cut(s) | 61, 69, 108, 181, 202, 220, 226 |
| BstMBI | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 120 |
| BstNI | CCWGG | 3 cut(s) | 32, 125, 158 |
| BstSCI | CCNGG | 3 cut(s) | 30, 123, 156 |
| BstX2I | RGATCY | 2 cut(s) | 178, 199 |
| BstYI | RGATCY | 2 cut(s) | 178, 199 |
| BsuRI | GGCC | 2 cut(s) | 92, 123 |
| CciI | TCATGA | 1 cut(s) | 220 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CviAII | CATG | 3 cut(s) | 94, 115, 221 |
| CviJI | RGCY | 2 cut(s) | 92, 123 |
| CviKI_1 | RGCY | 2 cut(s) | 92, 123 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DpnI | GATC | 7 cut(s) | 60, 68, 107, 180, 201, 219, 225 |
| DpnII | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| EaeI | YGGCCR | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 61 |
| EcoRII | CCWGG | 3 cut(s) | 30, 123, 156 |
| FaeI | CATG | 3 cut(s) | 97, 118, 224 |
| FaiI | YATR | 5 cut(s) | 95, 116, 170, 185, 222 |
| FatI | CATG | 3 cut(s) | 93, 114, 220 |
| FauI | CCCGC | 1 cut(s) | 154 |
| FblI | GTMKAC | 1 cut(s) | 153 |
| HaeIII | GGCC | 2 cut(s) | 92, 123 |
| Hin1II | CATG | 3 cut(s) | 97, 118, 224 |
| HincII | GTYRAC | 2 cut(s) | 133, 154 |
| HindII | GTYRAC | 2 cut(s) | 133, 154 |
| HinfI | GANTC | 3 cut(s) | 4, 20, 101 |
| HphI | GGTGA | 2 cut(s) | 53, 64 |
| Hpy166II | GTNNAC | 2 cut(s) | 133, 154 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 221 |
| Hpy8I | GTNNAC | 2 cut(s) | 133, 154 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 2 cut(s) | 82, 85 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 2 cut(s) | 17, 141 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 120 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 3 cut(s) | 97, 118, 224 |
| Kzo9I | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| LpnPI | CCDG | 8 cut(s) | 17, 44, 77, 110, 137, 143, 170, 179 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 7 cut(s) | 60, 68, 107, 180, 201, 219, 225 |
| MboI | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| MboII | GAAGA | 1 cut(s) | 188 |
| MflI | RGATCY | 2 cut(s) | 178, 199 |
| MluCI | AATT | 1 cut(s) | 165 |
| MlyI | GAGTC | 1 cut(s) | 95 |
| MnlI | CCTC | 1 cut(s) | 166 |
| MspR9I | CCNGG | 3 cut(s) | 32, 125, 158 |
| MvaI | CCWGG | 3 cut(s) | 32, 125, 158 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 120 |
| NdeII | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| NlaIII | CATG | 3 cut(s) | 97, 118, 224 |
| PagI | TCATGA | 1 cut(s) | 220 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 126 |
| PfeI | GAWTC | 2 cut(s) | 4, 20 |
| PleI | GAGTC | 1 cut(s) | 95 |
| PpsI | GAGTC | 1 cut(s) | 95 |
| Psp6I | CCWGG | 3 cut(s) | 30, 123, 156 |
| PspGI | CCWGG | 3 cut(s) | 30, 123, 156 |
| PsuI | RGATCY | 2 cut(s) | 178, 199 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| SalI | GTCGAC | 1 cut(s) | 152 |
| Sau3AI | GATC | 7 cut(s) | 58, 66, 105, 178, 199, 217, 223 |
| SchI | GAGTC | 1 cut(s) | 95 |
| ScrFI | CCNGG | 3 cut(s) | 32, 125, 158 |
| SetI | ASST | 3 cut(s) | 36, 77, 132 |
| Sse9I | AATT | 1 cut(s) | 165 |
| SsiI | CCGC | 1 cut(s) | 161 |
| StyD4I | CCNGG | 3 cut(s) | 30, 123, 156 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 3 cut(s) | 104, 153, 204 |
| TasI | AATT | 1 cut(s) | 165 |
| TatI | WGTACW | 1 cut(s) | 186 |
| TfiI | GAWTC | 2 cut(s) | 4, 20 |
| TspDTI | ATGAA | 4 cut(s) | 17, 27, 110, 131 |
| XmiI | GTMKAC | 1 cut(s) | 153 |