RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 159 |
| AcoI | YGGCCR | 1 cut(s) | 127 |
| AcuI | CTGAAG | 1 cut(s) | 67 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 1 cut(s) | 175 |
| AluI | AGCT | 1 cut(s) | 175 |
| AoxI | GGCC | 3 cut(s) | 51, 96, 127 |
| AspS9I | GGNCC | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 1 cut(s) | 70 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| BceAI | ACGGC | 1 cut(s) | 142 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 136, 170 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 51 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 170, 263 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 30, 60, 192, 222 |
| Bse1I | ACTGG | 1 cut(s) | 163 |
| Bse3DI | GCAATG | 1 cut(s) | 235 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseMI | GCAATG | 1 cut(s) | 235 |
| BseNI | ACTGG | 1 cut(s) | 163 |
| BseRI | GAGGAG | 1 cut(s) | 216 |
| BshFI | GGCC | 3 cut(s) | 53, 98, 129 |
| BsnI | GGCC | 3 cut(s) | 53, 98, 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| Bsp143I | GATC | 2 cut(s) | 15, 72 |
| BspANI | GGCC | 3 cut(s) | 53, 98, 129 |
| BsrDI | GCAATG | 1 cut(s) | 235 |
| BsrI | ACTGG | 1 cut(s) | 163 |
| BssMI | GATC | 2 cut(s) | 15, 72 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 1 cut(s) | 212 |
| BstBAI | YACGTR | 2 cut(s) | 170, 263 |
| BstKTI | GATC | 2 cut(s) | 18, 75 |
| BstMBI | GATC | 2 cut(s) | 15, 72 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BsuRI | GGCC | 3 cut(s) | 53, 98, 129 |
| Cfr13I | GGNCC | 1 cut(s) | 51 |
| CviAII | CATG | 2 cut(s) | 100, 121 |
| CviJI | RGCY | 6 cut(s) | 43, 53, 98, 129, 175, 250 |
| CviKI_1 | RGCY | 6 cut(s) | 43, 53, 98, 129, 175, 250 |
| DpnI | GATC | 2 cut(s) | 17, 74 |
| DpnII | GATC | 2 cut(s) | 15, 72 |
| EaeI | YGGCCR | 1 cut(s) | 127 |
| Eam1104I | CTCTTC | 1 cut(s) | 212 |
| EarI | CTCTTC | 1 cut(s) | 212 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco57I | CTGAAG | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| FaeI | CATG | 2 cut(s) | 103, 124 |
| FaiI | YATR | 3 cut(s) | 101, 122, 238 |
| FatI | CATG | 2 cut(s) | 99, 120 |
| FblI | GTMKAC | 1 cut(s) | 159 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| HaeIII | GGCC | 3 cut(s) | 53, 98, 129 |
| Hin1II | CATG | 2 cut(s) | 103, 124 |
| HincII | GTYRAC | 2 cut(s) | 139, 160 |
| HindII | GTYRAC | 2 cut(s) | 139, 160 |
| HphI | GGTGA | 1 cut(s) | 70 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 160 |
| Hpy188I | TCNGA | 1 cut(s) | 38 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 160 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyAV | CCTTC | 3 cut(s) | 88, 91, 205 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 169, 262 |
| HpyCH4V | TGCA | 1 cut(s) | 147 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpySE526I | ACGT | 3 cut(s) | 135, 169, 262 |
| Hsp92II | CATG | 2 cut(s) | 103, 124 |
| Kzo9I | GATC | 2 cut(s) | 15, 72 |
| LpnPI | CCDG | 6 cut(s) | 34, 83, 116, 143, 176, 231 |
| MaeII | ACGT | 3 cut(s) | 135, 169, 262 |
| MaeIII | GTNAC | 1 cut(s) | 165 |
| MalI | GATC | 2 cut(s) | 17, 74 |
| MboI | GATC | 2 cut(s) | 15, 72 |
| MboII | GAAGA | 1 cut(s) | 229 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MluCI | AATT | 1 cut(s) | 25 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| MnlI | CCTC | 3 cut(s) | 16, 32, 194 |
| MseI | TTAA | 1 cut(s) | 110 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 25 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NdeII | GATC | 2 cut(s) | 15, 72 |
| NlaIII | CATG | 2 cut(s) | 103, 124 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 42, 132 |
| Ppu21I | YACGTR | 2 cut(s) | 170, 263 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspPI | GGNCC | 1 cut(s) | 51 |
| SalI | GTCGAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 1 cut(s) | 110 |
| Sau3AI | GATC | 2 cut(s) | 15, 72 |
| Sau96I | GGNCC | 1 cut(s) | 51 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SetI | ASST | 5 cut(s) | 83, 138, 172, 177, 265 |
| Sse9I | AATT | 1 cut(s) | 25 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaiI | ACGT | 3 cut(s) | 138, 172, 265 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TasI | AATT | 1 cut(s) | 25 |
| Tru1I | TTAA | 1 cut(s) | 110 |
| Tru9I | TTAA | 1 cut(s) | 110 |
| TspDTI | ATGAA | 3 cut(s) | 22, 116, 137 |
| XmiI | GTMKAC | 1 cut(s) | 159 |