Rh4BG065600

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019404
Physical Location & Seq
Forward (+)
11665666 .. 11673925
8260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG065600.1

Sequence Viewer

Length: 333 bp
ATGTCCTCTGCCGAGATCAAGTTCAATTGTTTCATCAGAGGGCTCGTCAGAGCCACCGATAACGGTGCACTCGAAAGGACTTTCACTTTTGGCGAGATCATCCAATCGAAGATCATCACCTTCAGTAATAAGAAGGCCATGAAAGACTCGATCAAAGTCATGAACGGCCAGGACGTTGACGACTGCAACATCATCGTAGACCAGGCGGGAATTATAGAGGAAGATCTTATGTACTTGCTGGTGGATCTCGACTACACCAAAGATCATGATCGCCCTAGAACAAAACAGGTTGTTAACTGGGAGATTCTAGTGGACAAGAAAGAGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

5.13

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019404)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281
rosa_roxburghii Rroxscaffold_1G00017400
rosa_samantha Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 106
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 168, 201
Alw21I GWGCWC 1 cut(s) 70
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 1 cut(s) 252
AoxI GGCC 2 cut(s) 135, 166
ApaLI GTGCAC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 175, 209
BciT130I CCWGG 2 cut(s) 170, 203
BfaI CTAG 2 cut(s) 276, 308
BglII AGATCT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 170, 203
BmrFI CCNGG 2 cut(s) 170, 203
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 2 cut(s) 170, 203
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 267
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 70
BshFI GGCC 2 cut(s) 137, 168
BsiHKAI GWGCWC 1 cut(s) 70
BsnI GGCC 2 cut(s) 137, 168
Bsp1286I GDGCHC 2 cut(s) 45, 70
Bsp143I GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
BspACI CCGC 1 cut(s) 206
BspANI GGCC 2 cut(s) 137, 168
BspHI TCATGA 2 cut(s) 159, 265
BspPI GGATC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 302
BssMI GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
Bst2UI CCWGG 2 cut(s) 170, 203
Bst4CI ACNGT 1 cut(s) 65
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 8 cut(s) 18, 99, 114, 153, 226, 247, 265, 271
BstMBI GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
BstNI CCWGG 2 cut(s) 170, 203
BstSCI CCNGG 2 cut(s) 168, 201
BstSLI GKGCMC 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 223, 244
BstYI RGATCY 2 cut(s) 223, 244
BsuRI GGCC 2 cut(s) 137, 168
BtsCI GGATG 1 cut(s) 99
CciI TCATGA 2 cut(s) 159, 265
Csp6I GTAC 1 cut(s) 232
CviAII CATG 3 cut(s) 139, 160, 266
CviJI RGCY 4 cut(s) 43, 53, 137, 168
CviKI_1 RGCY 4 cut(s) 43, 53, 137, 168
CviQI GTAC 1 cut(s) 232
DpnI GATC 8 cut(s) 17, 98, 113, 152, 225, 246, 264, 270
DpnII GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
EaeI YGGCCR 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 168, 201
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 3 cut(s) 142, 163, 269
FaiI YATR 5 cut(s) 140, 161, 215, 230, 267
FatI CATG 3 cut(s) 138, 159, 265
FauI CCCGC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 2 cut(s) 276, 308
HaeIII GGCC 2 cut(s) 137, 168
Hin1II CATG 3 cut(s) 142, 163, 269
HincII GTYRAC 2 cut(s) 178, 295
HindII GTYRAC 2 cut(s) 178, 295
HinfI GANTC 2 cut(s) 146, 304
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 5 cut(s) 68, 178, 199, 295, 313
Hpy188I TCNGA 2 cut(s) 38, 50
Hpy188III TCNNGA 3 cut(s) 160, 248, 266
Hpy8I GTNNAC 5 cut(s) 68, 178, 199, 295, 313
HpyAV CCTTC 2 cut(s) 127, 130
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 68, 186
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 142, 163, 269
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
LpnPI CCDG 7 cut(s) 155, 182, 188, 215, 224, 272, 283
MaeI CTAG 2 cut(s) 276, 308
MaeII ACGT 1 cut(s) 174
MalI GATC 8 cut(s) 17, 98, 113, 152, 225, 246, 264, 270
MboI GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
MboII GAAGA 2 cut(s) 121, 233
MfeI CAATTG 1 cut(s) 25
MflI RGATCY 2 cut(s) 223, 244
MhlI GDGCHC 2 cut(s) 45, 70
MluCI AATT 2 cut(s) 25, 210
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 16, 32, 211
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 170, 203
MunI CAATTG 1 cut(s) 25
MvaI CCWGG 2 cut(s) 170, 203
NdeII GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
NlaIII CATG 3 cut(s) 142, 163, 269
NmeAIII GCCGAG 1 cut(s) 37
PagI TCATGA 2 cut(s) 159, 265
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 171
PfeI GAWTC 1 cut(s) 304
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 168, 201
PspGI CCWGG 2 cut(s) 168, 201
PsuI RGATCY 2 cut(s) 223, 244
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 8 cut(s) 15, 96, 111, 150, 223, 244, 262, 268
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 170, 203
SduI GDGCHC 2 cut(s) 45, 70
SetI ASST 3 cut(s) 122, 177, 291
Sse9I AATT 2 cut(s) 25, 210
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 276, 308
StyD4I CCNGG 2 cut(s) 168, 201
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 177
TaqI TCGA 4 cut(s) 72, 107, 149, 249
TasI AATT 2 cut(s) 25, 210
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TspDTI ATGAA 3 cut(s) 22, 155, 176
VneI GTGCAC 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 276, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.