RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0428271 RchiOBHm_Chr4g0428281 |
| rosa_roxburghii | Rroxscaffold_1G00017400 |
| rosa_samantha | Rh1CG136500 Rh4BG065600 Rh4CG072300 Rh7AG295100 Rh7CG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 145 |
| AfaI | GTAC | 1 cut(s) | 48 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 109, 182 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| Alw21I | GWGCWC | 2 cut(s) | 72, 153 |
| AlwI | GGATC | 1 cut(s) | 145 |
| AoxI | GGCC | 1 cut(s) | 51 |
| AspS9I | GGNCC | 2 cut(s) | 51, 112 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 2 cut(s) | 72, 153 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 112 |
| BsaBI | GATNNNNATC | 1 cut(s) | 142 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 30, 60 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 109, 182 |
| Bse1I | ACTGG | 1 cut(s) | 170 |
| Bse8I | GATNNNNATC | 1 cut(s) | 142 |
| BseGI | GGATG | 1 cut(s) | 99 |
| BseJI | GATNNNNATC | 1 cut(s) | 142 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 109, 182 |
| BseNI | ACTGG | 1 cut(s) | 170 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 2 cut(s) | 72, 153 |
| BsiWI | CGTACG | 1 cut(s) | 46 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 109, 182 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 3 cut(s) | 45, 72, 153 |
| Bsp143I | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 145 |
| BsrI | ACTGG | 1 cut(s) | 170 |
| BssMI | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| Bst4CI | ACNGT | 1 cut(s) | 65 |
| BstF5I | GGATG | 1 cut(s) | 99 |
| BstKTI | GATC | 6 cut(s) | 18, 99, 130, 135, 140, 160 |
| BstMBI | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| BstX2I | RGATCY | 1 cut(s) | 137 |
| BstYI | RGATCY | 1 cut(s) | 137 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtsCI | GGATG | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 112 |
| Csp6I | GTAC | 1 cut(s) | 47 |
| CviJI | RGCY | 2 cut(s) | 43, 53 |
| CviKI_1 | RGCY | 2 cut(s) | 43, 53 |
| CviQI | GTAC | 1 cut(s) | 47 |
| DpnI | GATC | 6 cut(s) | 17, 98, 129, 134, 139, 159 |
| DpnII | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| FaiI | YATR | 3 cut(s) | 191, 214, 216 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy188I | TCNGA | 5 cut(s) | 38, 132, 137, 142, 233 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 65 |
| Kzo9I | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| LpnPI | CCDG | 2 cut(s) | 151, 211 |
| MalI | GATC | 6 cut(s) | 17, 98, 129, 134, 139, 159 |
| MboI | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| MboII | GAAGA | 2 cut(s) | 200, 213 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 1 cut(s) | 137 |
| MhlI | GDGCHC | 3 cut(s) | 45, 72, 153 |
| MluCI | AATT | 1 cut(s) | 25 |
| MnlI | CCTC | 2 cut(s) | 16, 32 |
| MunI | CAATTG | 1 cut(s) | 25 |
| NdeII | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 42, 69 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| Pfl23II | CGTACG | 1 cut(s) | 46 |
| PspLI | CGTACG | 1 cut(s) | 46 |
| PspPI | GGNCC | 2 cut(s) | 51, 112 |
| PsuI | RGATCY | 1 cut(s) | 137 |
| RsaI | GTAC | 1 cut(s) | 48 |
| RsaNI | GTAC | 1 cut(s) | 47 |
| Sau3AI | GATC | 6 cut(s) | 15, 96, 127, 132, 137, 157 |
| Sau96I | GGNCC | 2 cut(s) | 51, 112 |
| SduI | GDGCHC | 3 cut(s) | 45, 72, 153 |
| SetI | ASST | 2 cut(s) | 114, 178 |
| SinI | GGWCC | 1 cut(s) | 112 |
| Sse9I | AATT | 1 cut(s) | 25 |
| TaaI | ACNGT | 1 cut(s) | 65 |
| TaqI | TCGA | 2 cut(s) | 72, 107 |
| TasI | AATT | 1 cut(s) | 25 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 1 cut(s) | 22 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |