RchiOBHm_Chr4g0429951

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017879
Physical Location & Seq
Reverse (-)
54658336 .. 54660888
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGTCTGACTGGGGACCGGTGTTTATTGCGGTGGTGCTGTTCGTGCTGTTGTCGCCAGGTCTGCTGTTCCAGGTGCCGGGGCGGCACGGGTGCGTGGAGTTTGGAAGCTTTCACACGAGCGGCGCAGCCATAATGGTTCACTCCCTCCTCTACTTTGCTCTCATTTGCGTCTTCTTGTTGGCCATTAAGGTCCACTTTTACCTTGTAGTAGTAATGGCAGATTGGGGACCAGTGGTGATAGCGGTGGTGTTGTTTGTGCTGTTAAGTCCGGGGCTACTGTTTCAGCTGCCGGGGAAGAGCAGAGTGGTGGAGTTTGGCAACATGCAAACCAGTGGACTATCCATCCTCGTCCACACCATCATCTTCTTTGGCCTCATCACCATCTTCCTCATCGCCATTGGCGTTCACATCTACACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

140

Amino Acids

15.22

Weight (kDa)

7.0

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 4.6e-33 Protein of unknown function (DUF3339)
DUF3339 PF11820 72 - 138 2.7e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0017879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08391
malus_domestica MD13G1121300.v1.1 MD16G1121600.v1.1
prunus_persica Prupe.1G223900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429951
rosa_laevigata RLG00000007018
rosa_multiflora Rmu_co8441175.1_g000001 Rmu_ssc0000150.1_g000039
rosa_roxburghii Rroxscaffold_5G00371780
rosa_rugosa Rorug04G0239600
rosa_wichuraiana Rw4G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 4 cut(s) 29, 82, 120, 242
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 55, 69
AluBI AGCT 2 cut(s) 108, 286
AluI AGCT 2 cut(s) 108, 286
AoxI GGCC 2 cut(s) 180, 370
ApeKI GCWGC 2 cut(s) 125, 286
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 14, 190, 227
AsuC2I CCSGG 3 cut(s) 78, 270, 291
AsuHPI GGTGA 2 cut(s) 247, 370
AvaII GGWCC 3 cut(s) 14, 190, 227
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 137, 273
BccI CCATC 3 cut(s) 350, 365, 389
BciT130I CCWGG 2 cut(s) 57, 71
BcnI CCSGG 3 cut(s) 78, 270, 291
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 4 cut(s) 83, 121, 126, 287
BlsI GCNGC 4 cut(s) 84, 122, 127, 288
Bme1390I CCNGG 5 cut(s) 57, 71, 78, 270, 291
Bme18I GGWCC 3 cut(s) 14, 190, 227
BmgT120I GGNCC 3 cut(s) 14, 190, 227
BmiI GGNNCC 3 cut(s) 15, 75, 228
BmrFI CCNGG 5 cut(s) 57, 71, 78, 270, 291
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 3 cut(s) 78, 270, 291
BsaJI CCNNGG 3 cut(s) 77, 269, 290
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 4 cut(s) 14, 230, 330, 421
BseBI CCWGG 2 cut(s) 57, 71
BseDI CCNNGG 3 cut(s) 77, 269, 290
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 4 cut(s) 14, 230, 330, 421
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 137, 273
BshFI GGCC 2 cut(s) 182, 372
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 4 cut(s) 17, 77, 269, 290
BslFI GGGAC 2 cut(s) 27, 240
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 2 cut(s) 27, 240
BsnI GGCC 2 cut(s) 182, 372
BspACI CCGC 4 cut(s) 29, 82, 120, 242
BspANI GGCC 2 cut(s) 182, 372
BspLI GGNNCC 3 cut(s) 15, 75, 228
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 4 cut(s) 14, 230, 330, 421
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 77, 269, 290
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 57, 71
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 290
BstF5I GGATG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
BstNI CCWGG 2 cut(s) 57, 71
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 5 cut(s) 55, 69, 76, 268, 289
BstV1I GCAGC 2 cut(s) 137, 273
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 182, 372
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 237, 337, 414
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 14, 190, 227
CseI GACGC 1 cut(s) 157
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 108, 128, 182, 274, 286, 372
CviKI_1 RGCY 6 cut(s) 108, 128, 182, 274, 286, 372
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 14, 190, 227
EcoRII CCWGG 2 cut(s) 55, 69
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 131, 323
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 27, 240
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 83, 121, 126, 287
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 4 cut(s) 83, 121, 126, 287
GlaI GCGC 1 cut(s) 124
GluI GCNGC 4 cut(s) 83, 121, 126, 287
HaeIII GGCC 2 cut(s) 182, 372
HapII CCGG 4 cut(s) 17, 77, 269, 290
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 4 cut(s) 17, 77, 269, 290
HphI GGTGA 2 cut(s) 247, 370
Hpy166II GTNNAC 5 cut(s) 139, 193, 335, 352, 406
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 5 cut(s) 139, 193, 335, 352, 406
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 290
Lsp1109I GCAGC 2 cut(s) 137, 273
MbiI CCGCTC 1 cut(s) 120
MboII GAAGA 4 cut(s) 163, 307, 355, 376
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
MnlI CCTC 5 cut(s) 155, 158, 356, 383, 398
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 2 cut(s) 186, 263
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 4 cut(s) 17, 77, 269, 290
MspR9I CCNGG 5 cut(s) 57, 71, 78, 270, 291
MvaI CCWGG 2 cut(s) 57, 71
MwoI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
NciI CCSGG 3 cut(s) 78, 270, 291
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 3 cut(s) 15, 75, 228
NspI RCATGY 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 4 cut(s) 84, 122, 127, 288
Psp6I CCWGG 2 cut(s) 55, 69
PspGI CCWGG 2 cut(s) 55, 69
PspN4I GGNNCC 3 cut(s) 15, 75, 228
PspPI GGNCC 3 cut(s) 14, 190, 227
PvuII CAGCTG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 186, 263
SatI GCNGC 4 cut(s) 83, 121, 126, 287
Sau96I GGNCC 3 cut(s) 14, 190, 227
ScrFI CCNGG 5 cut(s) 57, 71, 78, 270, 291
SetI ASST 6 cut(s) 61, 75, 110, 192, 204, 288
SinI GGWCC 3 cut(s) 14, 190, 227
SsiI CCGC 4 cut(s) 29, 82, 120, 242
StyD4I CCNGG 5 cut(s) 55, 69, 76, 268, 289
TaaI ACNGT 1 cut(s) 279
TauI GCSGC 2 cut(s) 85, 123
Tru1I TTAA 2 cut(s) 186, 263
Tru9I TTAA 2 cut(s) 186, 263
TscAI CASTG 3 cut(s) 237, 337, 421
TseI GCWGC 2 cut(s) 125, 286
TspRI CASTG 3 cut(s) 237, 337, 421
VpaK11BI GGWCC 3 cut(s) 14, 190, 227
XceI RCATGY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.