Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016829

Physical Location & Seq

Genomic Coordinates Reverse (-)

54840866 .. 54842908

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGCAGTATAAGAGAGTTGTGGATCTTCATAACTTGCTCGGAGGAGACTCGAATCAGACTAGTGTGCGTGGGATCAGTGATGAGAATGAACGAGATCGCTGGGGAAAGAAGCCTATGAACACTGACGCAAGCAGAGGTAAGAAGGAGTTGAAGCGCCTGAGGGTTTTGAGGATGGCAGTGATTTACATGATGATGTTTGTGCTGAATCTGTACGAGTTCGCGAAGAAGAACTTGGGGCCTCTGAGATCGACTGTGTGGACTGTGGAGGTTGCTATGATCACTATTGTTGGTCCAGTCTACCAGAGATTCAAGGGAGTGCCTGATGATTTCTTTGCTTTACTCGACACGAAGATTGATGAAGCAGCTGACAAGTTTGATAAGCATGCTCCTCCTTTGGCTAAGCAGGTGGTGTACCTAACTCTAGGTTCTATCCAGAAAGCATTGAAAAAGACCCAAGCATTTGTGAACGAGGCTCAGGCTGGCGGTCTGCACACAGCTATTCATTCTGCAGCTACAGAATATAACCTGCTTGTCTTCAACCAATCAATGAAGTTTTGGGTTGGACTCGAGTACCAGTGTCCTCCCACACACAGTGGCAGAGAAGGCTACACCAGCTGCTGCTTACTTGTCCCGGAAATACAACAAGGTGGTAAGAGACTTGAACCTGAAGGGTTACACTATCTTTGGATATTTACCTTTGGTTCCGATCGATCAGATATCAACAGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

9.01

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	48 - 195	1.2e-40	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23780
rosa_chinensis	RchiOBHm_Chr4g0430271
rosa_laevigata	RLG00000006989
rosa_multiflora	Rmu_sc0001089.1_g000025 Rmu_sc0027338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372070
rosa_rugosa	Rorug04G0242200 Rorug04G0242300 Rorug04G0242400
rosa_samantha	Rh4AG298700 Rh4BG305300 Rh4CG320800 Rh4DG302600
rosa_wichuraiana	Rw4G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	2 cut(s)	397, 537
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	224
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	2 cut(s)	33, 83
AcuI	CTGAAG	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	215, 416, 575
AgsI	TTSAA	5 cut(s)	154, 313, 448, 541, 665
AhlI	ACTAGT	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	368, 500, 515, 618
AluI	AGCT	4 cut(s)	368, 500, 515, 618
Alw26I	GTCTC	2 cut(s)	42, 652
AlwI	GGATC	2 cut(s)	33, 83
AlwNI	CAGNNNCTG	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	365, 512, 618, 621
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	239, 293
AsuC2I	CCSGG	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	557, 590
BbsI	GAAGAC	1 cut(s)	529
BbvI	GCAGC	4 cut(s)	377, 524, 605, 608
BccI	CCATC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	42, 652
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 425
BfmI	CTRYAG	2 cut(s)	510, 516
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	2 cut(s)	397, 537
BisI	GCNGC	4 cut(s)	366, 513, 619, 622
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	4 cut(s)	367, 514, 620, 623
Bme1390I	CCNGG	1 cut(s)	635
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	239, 293
BmiI	GGNNCC	2 cut(s)	240, 706
BmrFI	CCNGG	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	712
Bse1I	ACTGG	2 cut(s)	296, 577
Bse21I	CCTNAGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	712
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	152, 236, 491
BseNI	ACTGG	2 cut(s)	296, 577
BseRI	GAGGAG	2 cut(s)	60, 381
BseXI	GCAGC	4 cut(s)	377, 524, 605, 608
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	712
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	42, 652
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	569
Bsp143I	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp68I	TCGCGA	1 cut(s)	224
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	3 cut(s)	153, 237, 490
BspDI	ATCGAT	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	240, 706
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	2 cut(s)	397, 537
BspPI	GGATC	2 cut(s)	33, 83
BsrI	ACTGG	2 cut(s)	296, 577
BssMI	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
Bst4CI	ACNGT	3 cut(s)	256, 265, 596
BstC8I	GCNNGC	3 cut(s)	133, 387, 484
BstDEI	CTNAG	4 cut(s)	161, 245, 402, 477
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	7 cut(s)	28, 78, 100, 251, 282, 712, 716
BstMAI	GTCTC	2 cut(s)	42, 652
BstMBI	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
BstMCI	CGRYCG	1 cut(s)	712
BstMWI	GCNNNNNNNGC	2 cut(s)	606, 615
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	2 cut(s)	510, 516
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	4 cut(s)	377, 524, 605, 608
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	5 cut(s)	85, 123, 186, 584, 601
BtuMI	TCGCGA	1 cut(s)	224
BveI	ACCTGC	2 cut(s)	397, 537
Cac8I	GCNNGC	3 cut(s)	133, 387, 484
CaiI	CAGNNNCTG	1 cut(s)	621
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	239, 293
ClaI	ATCGAT	1 cut(s)	712
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	214, 415, 574
CviAII	CATG	2 cut(s)	190, 386
CviQI	GTAC	3 cut(s)	214, 415, 574
DdeI	CTNAG	4 cut(s)	161, 245, 402, 477
DpnI	GATC	7 cut(s)	27, 77, 99, 250, 281, 711, 715
DpnII	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
DraIII	CACNNNGTG	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	690
Eco81I	CCTNAGG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	721
FaeI	CATG	2 cut(s)	193, 389
FaiI	YATR	7 cut(s)	12, 33, 119, 191, 278, 387, 525
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	2 cut(s)	189, 385
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	366, 513, 619, 622
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	366, 513, 619, 622
FspBI	CTAG	2 cut(s)	63, 425
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	4 cut(s)	366, 513, 619, 622
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	635
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	193, 389
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	5 cut(s)	50, 55, 208, 309, 567
HpaII	CCGG	1 cut(s)	635
Hpy166II	GTNNAC	4 cut(s)	261, 301, 415, 469
Hpy188I	TCNGA	5 cut(s)	44, 60, 246, 709, 718
Hpy188III	TCNNGA	2 cut(s)	223, 436
Hpy8I	GTNNAC	4 cut(s)	261, 301, 415, 469
HpyAV	CCTTC	3 cut(s)	139, 599, 665
HpyCH4III	ACNGT	3 cut(s)	256, 265, 596
HpyCH4V	TGCA	3 cut(s)	7, 493, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	606, 615
HpyF3I	CTNAG	4 cut(s)	161, 245, 402, 477
Hsp92II	CATG	2 cut(s)	193, 389
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	4 cut(s)	377, 524, 605, 608
MaeI	CTAG	2 cut(s)	63, 425
MaeIII	GTNAC	1 cut(s)	675
MalI	GATC	7 cut(s)	27, 77, 99, 250, 281, 711, 715
MboI	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
MboII	GAAGA	5 cut(s)	20, 238, 241, 364, 529
MflI	RGATCY	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	44, 561
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	9 cut(s)	38, 131, 156, 165, 252, 262, 402, 466, 594
MseI	TTAA	1 cut(s)	733
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	368, 618
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	635
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	606, 615
NciI	CCSGG	1 cut(s)	635
NdeII	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
NlaIII	CATG	2 cut(s)	193, 389
NlaIV	GGNNCC	2 cut(s)	240, 706
NruI	TCGCGA	1 cut(s)	224
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	569
PaqCI	CACCTGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	55, 208, 309
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	4 cut(s)	367, 514, 620, 623
Ple19I	CGATCG	1 cut(s)	712
PleI	GAGTC	2 cut(s)	44, 561
PpsI	GAGTC	2 cut(s)	44, 561
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	240, 706
PspPI	GGNCC	2 cut(s)	239, 293
PspXI	VCTCGAGB	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	712
PvuII	CAGCTG	2 cut(s)	368, 618
RruI	TCGCGA	1 cut(s)	224
RsaI	GTAC	3 cut(s)	215, 416, 575
RsaNI	GTAC	3 cut(s)	214, 415, 574
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	733
SatI	GCNGC	4 cut(s)	366, 513, 619, 622
Sau3AI	GATC	7 cut(s)	25, 75, 97, 248, 279, 709, 713
Sau96I	GGNCC	2 cut(s)	239, 293
SchI	GAGTC	2 cut(s)	44, 561
ScrFI	CCNGG	1 cut(s)	635
SfcI	CTRYAG	2 cut(s)	510, 516
Sfr274I	CTCGAG	1 cut(s)	569
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SpeI	ACTAGT	1 cut(s)	62
SphI	GCATGC	1 cut(s)	389
SsiI	CCGC	1 cut(s)	486
SspMI	CTAG	2 cut(s)	63, 425
StyD4I	CCNGG	1 cut(s)	633
TaaI	ACNGT	3 cut(s)	256, 265, 596
TaqI	TCGA	5 cut(s)	53, 251, 345, 570, 712
TfiI	GAWTC	3 cut(s)	55, 208, 309
Tru1I	TTAA	1 cut(s)	733
Tru9I	TTAA	1 cut(s)	733
TscAI	CASTG	5 cut(s)	85, 130, 186, 584, 601
TseI	GCWGC	4 cut(s)	365, 512, 618, 621
TspDTI	ATGAA	6 cut(s)	20, 105, 134, 375, 494, 566
TspRI	CASTG	5 cut(s)	85, 130, 186, 584, 601
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	63, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.