Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

55089655 .. 55090501

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCAGATACTGCTGCTGGTATTTGCTGTGGTTGGGTTTCTGACTGGTTACCTTATGGGGTCGTTCCAGATGATGATGCTCGTGTATGCAGGTGGTGTGGTTCTGACCACATTAGTCACTGTCCCCAATTGGCCCTGGTTCAATCGCCACCCCCTGAAATGGTTGGACCCAATCGAAGCCGAAAAGCACCCCAAGCCTCAGAAGCAGCAGCAGCCGGTGAGTTCCAAGAAGAAAGGCTCCAAAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

10.08

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC12	PF06645	1 - 57	4.7e-23	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	4 cut(s)	13, 205, 208, 211
AspS9I	GGNCC	2 cut(s)	132, 166
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	217, 220, 223
BciT130I	CCWGG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	14, 206, 209, 212
BlsI	GCNGC	4 cut(s)	15, 207, 210, 213
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	132, 166
BmiI	GGNNCC	2 cut(s)	168, 238
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	217, 220, 223
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	168, 238
BspMI	ACCTGC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 193, 202, 211
BstNI	CCWGG	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	217, 220, 223
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	132, 166
CviJI	RGCY	5 cut(s)	133, 179, 196, 214, 237
CviKI_1	RGCY	5 cut(s)	133, 179, 196, 214, 237
DdeI	CTNAG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	134
FaiI	YATR	2 cut(s)	56, 87
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	4 cut(s)	14, 206, 209, 212
Fsp4HI	GCNGC	4 cut(s)	14, 206, 209, 212
GluI	GCNGC	4 cut(s)	14, 206, 209, 212
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	215
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	42, 105, 201
Hpy188III	TCNNGA	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	4, 89
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 193, 202, 211
HpyF3I	CTNAG	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	2, 30, 75, 80, 121, 148, 167, 228
Lsp1109I	GCAGC	3 cut(s)	217, 220, 223
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	47, 115
MboII	GAAGA	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	127
MluCI	AATT	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	207
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	4 cut(s)	10, 193, 202, 211
NlaIV	GGNNCC	2 cut(s)	168, 238
NmuCI	GTSAC	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	15, 207, 210, 213
Psp6I	CCWGG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	168, 238
PspPI	GGNCC	2 cut(s)	132, 166
PstNI	CAGNNNCTG	1 cut(s)	10
SatI	GCNGC	4 cut(s)	14, 206, 209, 212
Sau96I	GGNCC	2 cut(s)	132, 166
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	2 cut(s)	54, 94
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	127
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	13, 205, 208, 211
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.