RchiOBHm_Chr4g0434861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016536
Physical Location & Seq
Reverse (-)
58510923 .. 58512631
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
ATGGCCATCGAGGTGTGCTCGGAGATTTCCAGCCCCGTATTTAGTCCAAGGATTTCGTTTTCTCATGATCTCGACAAGGCAAACGTTACGGTGACAAAAGAAGAGCAGCCACAACAACGGTTAGACTCATCTCTGGTGGATTCAAGTTCTGATTTCGACTTCTGCATAGTCAATAATATCAAGCTAGAGCTGTCTTCGGCGGACGAGCTTTTCTCCAATGGCAAGATTCTTCCTGTCCAAATCAAGCTAAATCCCAACACCACCACCGCCACCAAAGAAGCCCTTCTTCAGCCTCCTCATCAATCCGCAACAAAAAACACAGAGAAAAAGAGACTGAAGGAGTTCTTAGACGACAGCAATGCTGAAGATGAAACTAATGAAAATGATGAGAAGCCTGCGATTGCAAAGCCCTCCTGGCAGTTCAGGAGAAGCAGCAGCCTCAATTTCGATAGTACTACTACTGCTCGCGGTATGAGCTTAATCCGATCACTCCATTTTCTTTCGAGAAGCAACTCAACCGGATCAGCTCCAAATCCAAAGCAAACAGTTACCCCAAATCAGAAGCAGCAGCATTTGCGGAAAAACCAATCTACCAACTCAAGAAGAAGATCATCATCAGCATCATCATCATCATGTTCAAGTAGCACTACATATTATCCTTACAACACCTCACCGCGGTCACAAAAGCCTTCGTTAAGGAAGAGTGGATCTTACGGCAATGGGGTAAGAATTAGTCCAGTCCTGAATCTCCCACCACCTTACATTTCAAAAGTTACCGTGAGTTTTTTCGGGTTCGGATCTCTCTTCTGTAATGGTAAGTTGAAAAGGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

279

Amino Acids

30.95

Weight (kDa)

9.72

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 468, 676
AciI CCGC 7 cut(s) 200, 267, 306, 468, 577, 674, 676
AclI AACGTT 1 cut(s) 84
AclWI GGATC 3 cut(s) 529, 715, 805
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 272, 356, 384
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 4 cut(s) 144, 639, 768, 823
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 6 cut(s) 184, 190, 208, 247, 477, 527
AluI AGCT 6 cut(s) 184, 190, 208, 247, 477, 527
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 3 cut(s) 529, 715, 805
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 106, 432, 435, 565, 568
Asp700I GAANNNNTTC 2 cut(s) 282, 341
AsuHPI GGTGA 2 cut(s) 103, 663
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 5 cut(s) 118, 444, 447, 577, 580
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 730
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 415
BisI GCNGC 5 cut(s) 107, 433, 436, 566, 569
BlsI GCNGC 5 cut(s) 108, 434, 437, 567, 570
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 629
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 3 cut(s) 34, 197, 229
BpuEI CTTGAG 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 47, 674
BsaWI WCCGGW 1 cut(s) 518
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse1I ACTGG 1 cut(s) 737
Bse3DI GCAATG 2 cut(s) 364, 724
Bse8I GATNNNNATC 1 cut(s) 613
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 2 cut(s) 47, 674
BseJI GATNNNNATC 1 cut(s) 613
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 2 cut(s) 364, 724
BseNI ACTGG 1 cut(s) 737
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 5 cut(s) 118, 444, 447, 577, 580
Bsh1236I CGCG 2 cut(s) 468, 676
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 6 cut(s) 67, 485, 521, 608, 707, 797
BspACI CCGC 7 cut(s) 200, 267, 306, 468, 577, 674, 676
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 468, 676
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 3 cut(s) 529, 715, 805
BspQI GCTCTTC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 364, 724
BsrI ACTGG 1 cut(s) 737
BssECI CCNNGG 2 cut(s) 47, 674
BssMI GATC 6 cut(s) 67, 485, 521, 608, 707, 797
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 4 cut(s) 91, 120, 547, 778
Bst6I CTCTTC 3 cut(s) 96, 695, 809
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 396, 466
BstDEI CTNAG 1 cut(s) 346
BstDSI CCRYGG 1 cut(s) 674
BstFNI CGCG 2 cut(s) 468, 676
BstKTI GATC 6 cut(s) 70, 488, 524, 611, 710, 800
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 6 cut(s) 67, 485, 521, 608, 707, 797
BstMWI GCNNNNNNNGC 3 cut(s) 415, 474, 574
BstNI CCWGG 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 413
BstUI CGCG 2 cut(s) 468, 676
BstV1I GCAGC 5 cut(s) 118, 444, 447, 577, 580
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 707, 797
BstYI RGATCY 2 cut(s) 707, 797
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 396, 466
CciI TCATGA 1 cut(s) 64
Cfr42I CCGCGG 1 cut(s) 677
Csp6I GTAC 1 cut(s) 453
CviAII CATG 2 cut(s) 65, 633
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 346
DpnI GATC 6 cut(s) 69, 487, 523, 610, 709, 799
DpnII GATC 6 cut(s) 67, 485, 521, 608, 707, 797
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 96, 695, 809
EarI CTCTTC 3 cut(s) 96, 695, 809
EciI GGCGGA 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 47
Eco57I CTGAAG 3 cut(s) 272, 356, 384
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 68, 636
FaiI YATR 5 cut(s) 66, 167, 473, 634, 652
FalI AAGNNNNNCTT 6 cut(s) 267, 299, 270, 302, 329, 361
FatI CATG 2 cut(s) 64, 632
Fnu4HI GCNGC 5 cut(s) 107, 433, 436, 566, 569
Fsp4HI GCNGC 5 cut(s) 107, 433, 436, 566, 569
FspBI CTAG 1 cut(s) 185
GluI GCNGC 5 cut(s) 107, 433, 436, 566, 569
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 519
Hin1II CATG 2 cut(s) 68, 636
HinfI GANTC 4 cut(s) 125, 140, 226, 745
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 103, 663
Hpy188I TCNGA 5 cut(s) 22, 151, 485, 561, 797
Hpy188III TCNNGA 6 cut(s) 65, 71, 424, 504, 600, 742
HpyAV CCTTC 3 cut(s) 293, 331, 699
HpyCH4III ACNGT 4 cut(s) 91, 120, 547, 778
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 165, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 474, 574
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 68, 636
KspI CCGCGG 1 cut(s) 677
Kzo9I GATC 6 cut(s) 67, 485, 521, 608, 707, 797
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 5 cut(s) 118, 444, 447, 577, 580
LweI GCATC 1 cut(s) 629
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 5 cut(s) 85, 91, 547, 678, 772
MalI GATC 6 cut(s) 69, 487, 523, 610, 709, 799
MboI GATC 6 cut(s) 67, 485, 521, 608, 707, 797
MboII GAAGA 9 cut(s) 113, 186, 221, 278, 377, 615, 618, 712, 796
MflI RGATCY 2 cut(s) 707, 797
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 442, 729
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 6 cut(s) 4, 303, 306, 421, 449, 679
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 282, 341
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 479, 695
MslI CAYNNNNRTG 2 cut(s) 11, 631
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 415
MvnI CGCG 2 cut(s) 468, 676
MwoI GCNNNNNNNGC 3 cut(s) 415, 474, 574
NdeII GATC 6 cut(s) 67, 485, 521, 608, 707, 797
NlaIII CATG 2 cut(s) 68, 636
NmuCI GTSAC 2 cut(s) 91, 678
PagI TCATGA 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 282, 341
PfeI GAWTC 3 cut(s) 140, 226, 745
PkrI GCNGC 5 cut(s) 108, 434, 437, 567, 570
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PsuI RGATCY 2 cut(s) 707, 797
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 11, 631
SacII CCGCGG 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 479, 695
SatI GCNGC 5 cut(s) 107, 433, 436, 566, 569
Sau3AI GATC 6 cut(s) 67, 485, 521, 608, 707, 797
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 1 cut(s) 629
Sfr303I CCGCGG 1 cut(s) 677
SgrBI CCGCGG 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 11, 631
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
Sse9I AATT 2 cut(s) 442, 729
SsiI CCGC 7 cut(s) 200, 267, 306, 468, 577, 674, 676
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 91, 120, 547, 778
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 9, 72, 156, 447, 503
TasI AATT 2 cut(s) 442, 729
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 3 cut(s) 140, 226, 745
Tru1I TTAA 2 cut(s) 479, 695
Tru9I TTAA 2 cut(s) 479, 695
TseFI GTSAC 2 cut(s) 91, 678
TseI GCWGC 5 cut(s) 106, 432, 435, 565, 568
Tsp45I GTSAC 2 cut(s) 91, 678
TspDTI ATGAA 2 cut(s) 384, 393
XmnI GAANNNNTTC 2 cut(s) 282, 341
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.