RchiOBHm_Chr3g0450051

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018855
Physical Location & Seq
Forward (+)
1678887 .. 1681508
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2421 bp
ATGGACCAAATTATGGTCACAACCAGACCTCATCTCCTATCATCTTCCCTCCTTCCTCTCACAATTCAAAATCTCCAACAACCATTTCTTCCCTCCAAATCCAAACTCAACCAAACCCCAAACCCAAACTCAGACCCATCTAAACACCAACCAAGCATTACTTATTCTTTCACTCCCAGCCTTGAACAAACCCAGCAAATCCATGCCCACATGATCAAAACCCAATTTGACCACACCCTTCAAATCCCACTCAATTCCCTCCAAACCCACATGAGCCCTTCAGCTCAGTACAACTTCCTAATAACATCTTACATCAAGAACCACCACCCCAAACTTGCACTCAAATTATACACCCAAATGAGAAGAATGGGCACCCAAGTTGACAACTTCACTATCCCATCAGTCCTCAAGGCCTGTGGTCAAGCTTCTATGGAACTATTAGGAAGAGAGACCCATGGTTTTGCATTGAAAAGCGGATTTGATAGTGATGTTTTCGTGTGTAATGCATTGATCCAAATGTATAGTGAATGTGGGAGCTTGGTGTTGGCACGCCTAGTATTTGATGAAATGATTGAAAGAGATGTGGTTTCTTGGAGTACCATGATTAATTGCTATGTGAGGAACAGAGTGTTTGGTGAGGCATTGGAACTTATAAGGGAGATGCATTGCTTGCAAGTGAAGCCTAGTGAAGTTGCTATGATAAGCATGGTTAGTCTATTTGCTGACATTGCAGATGTGAAAATGGGGAAAGCAATGCATGCTTATGTTGCGAGGAATAGCAGTAATGAGAGAATGGTGGTTCATGTTACTACTGCTTTAGTAGATATGTATGTCAAGTGTGGGAATTTGGCTTATGGAAGGAGGCTGTTTGATGGGTTGGCTCAGAAAAGTGTTGTTTCCTGGACTGCGATGATCGCGGGGTGCATTCGTTGCAATGAGGTAGAAGAGGGGGTGAAACTTTTTAAGAGAATGCTGGAGGAGAGGAAGTTTCCTAATGAGATTACAATGTTGAGTTTGGTTATCGAGTCGGGGTCTGTTGGAGCTCTGGAATTGGGGAAGTGGCTGCATGCCTATGTTTTGAGAAATGGGTTTGTCATGTCTTTGGCTTTGGCCACTGCTTTGGTTGATATGTATGGGAAGTGTGGTGAAGCCGAATATGCAAGGGCTGTGTTTGACAGCATGGAGAAGAAAGATGTCATGATTTGGAGTGCTATGATCTCGGCTTATGCACGCTCCAATTGTACTAATCAGGCTTCGGAGCTCTTTGCCCGGATGAAGGATAGTGGAATAAGGCCAAATCAAGTTACAATGGTTAGCCTCATTTCACTATGTGCAGAAGTAGGAGCCCTTGATCTGGGAAAATGGGTTCATTCTTACATAAACCAGCAACGGATAGAAGTTGATGTGATACTAAGAACAGCTCTAGTGGACATGTATGCAAAATGTGGGGAGATAGATGCGGCTCTCAGGCTGTTTAGTGAAGCCAGATATCGAGACAGTCGAATGTGGAATGCTATGATCACTGGATTTTCCATGCATGGTTGTGGGAAACAAGCTTTAGAGCTCTTTGAAGAAATGCAGAGAGCAGGTGTTGAGCCTAACGACATCACATTTATAGGGCTACTTCATGCTTGTAGCCATGCTGGGTTGGTGGCAGATGGAAAGAAGGTTTTCGAGAAAATGGTACTTGACTTTGGCTTGGCTCCAAAGGTTGAGCACTATGGATGCATGGTGGATTTGCTAGGCCGAGCTGGGAAGCTCGATGAGGCTCACGAGTTGATCAAAAGCATGCCCGTGGAGCCTAACCCAATTGTTTGGGGCTCCCTGCTTGCTGCCTGCAAAATTCATAAGAGTCCCAACTTGGCTGAAGTGGCAGCAAGACAACTGCTTGAGTTGGAACCTCAAAATTGCGGTTACAACGTTCTGATGTCAAACATTTATGCAGCATCAAACAGATGGATTGATGTTGCTGGGGTTAGAAAAGCTATGGAAGATAAAGGAACCAAGAAAGAACCAGGTCTCAGCTCAATTGAAGTAAACGGTGCAGTTCATGACTTCATGATGGGTGATAAAACACACCCGCAAACAAGAAAAATTTATGAAATGCTGGCTGAGATGATCAAGAAGCTAAAGGAGGCTGGATACACTCCTAATACATCTGTGGTTTTGCAGAACATAGATGAGGAAGAGAAAGAAACTGCGGTAAACTATCATAGTGAGAAACTGGCCATGGCATTTGGTCTAATCAGTACTGCTGCAGGTACCCCAATTCGGATTGTGAAAAATCTCCGAGTTTGTGATGACTGTCACACAGCAACAAAGCTGTTATCAAAGATTTATGGCAGAGTAATGACAGTAAGGGACCGTAATCGCTTTCACCACTTCATAGAAGGATCTTGTTCTTGTGGTGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

806

Amino Acids

90.2

Weight (kDa)

7.31

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 97 - 139 4e-08 PPR repeat family
PPR_2 PF13041 193 - 238 2.5e-07 PPR repeat family
PPR PF01535 196 - 222 8.2e-06 PPR repeat
PPR_2 PF13041 297 - 338 1.6e-07 PPR repeat family
PPR PF01535 299 - 327 2.2e-06 PPR repeat
PPR_2 PF13041 397 - 445 3.3e-10 PPR repeat family
PPR_2 PF13041 499 - 546 5.1e-12 PPR repeat family
PPR PF01535 502 - 531 1.1e-07 PPR repeat
E_motif PF20431 620 - 678 2e-17 E motif
Eplus_motif PF20430 683 - 710 6.4e-06 E+ motif
DYW_deaminase PF14432 714 - 806 2.8e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018855)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02300
malus_domestica MD12G1245600.v1.1
prunus_persica Prupe.6G348400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450051
rosa_laevigata RLG00000025761
rosa_multiflora Rmu_sc0002646.1_g000023
rosa_rugosa Rorug02G0625100
rosa_samantha Rh3DG024800
rosa_wichuraiana Rw3G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
AarI CACCTGC 1 cut(s) 1577
Acc36I ACCTGC 2 cut(s) 1577, 2249
Acc65I GGTACC 1 cut(s) 2261
AccB1I GGYRCC 2 cut(s) 371, 2261
AccB7I CCANNNNNTGG 1 cut(s) 13
AccII CGCG 1 cut(s) 917
AciI CCGC 6 cut(s) 474, 917, 1460, 1911, 2081, 2201
AclI AACGTT 1 cut(s) 1920
AclWI GGATC 2 cut(s) 505, 2401
AcoI YGGCCR 2 cut(s) 1110, 2226
AcsI RAATTY 3 cut(s) 844, 1842, 2094
AcuI CTGAAG 2 cut(s) 264, 1887
AdeI CACNNNGTG 1 cut(s) 1331
AfaI GTAC 6 cut(s) 290, 598, 1243, 1686, 2251, 2263
AfiI CCNNNNNNNGG 4 cut(s) 13, 1276, 1354, 2271
AflIII ACRYGT 1 cut(s) 1431
AgsI TTSAA 7 cut(s) 68, 185, 242, 469, 575, 1571, 2033
AjnI CCWGG 2 cut(s) 899, 2014
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AloI GAACNNNNNNTCC 2 cut(s) 1350, 1382
Alw21I GWGCWC 4 cut(s) 1045, 1263, 1566, 1719
Alw26I GTCTC 3 cut(s) 443, 1488, 2024
AlwI GGATC 2 cut(s) 505, 2401
AoxI GGCC 5 cut(s) 411, 1110, 1292, 1744, 2226
ApeKI GCWGC 5 cut(s) 1063, 1832, 1874, 1943, 2255
ApoI RAATTY 3 cut(s) 844, 1842, 2094
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 1670
Asp718I GGTACC 1 cut(s) 2261
AspS9I GGNCC 2 cut(s) 4, 2362
AsuC2I CCSGG 1 cut(s) 1270
AsuHPI GGTGA 6 cut(s) 647, 964, 1157, 2078, 2369, 2420
AvaII GGWCC 2 cut(s) 4, 2362
BaeGI GKGCMC 1 cut(s) 374
BalI TGGCCA 2 cut(s) 1112, 2228
BanI GGYRCC 2 cut(s) 371, 2261
BanII GRGCYC 6 cut(s) 278, 1045, 1263, 1348, 1566, 1823
BauI CACGAG 1 cut(s) 1772
Bbv12I GWGCWC 4 cut(s) 1045, 1263, 1566, 1719
BbvI GCAGC 5 cut(s) 1050, 1819, 1886, 1955, 2242
BccI CCATC 6 cut(s) 145, 406, 866, 1652, 1950, 2056
BciT130I CCWGG 2 cut(s) 901, 2016
BciVI GTATCC 1 cut(s) 2135
BclI TGATCA 4 cut(s) 213, 1518, 1779, 2118
BcnI CCSGG 1 cut(s) 1270
BcoDI GTCTC 3 cut(s) 443, 1488, 2024
BfaI CTAG 4 cut(s) 554, 684, 1424, 1742
BfmI CTRYAG 1 cut(s) 2256
BfuAI ACCTGC 2 cut(s) 1577, 2249
BfuI GTATCC 1 cut(s) 2135
BisI GCNGC 6 cut(s) 1064, 1461, 1833, 1875, 1944, 2256
BlsI GCNGC 6 cut(s) 1065, 1462, 1834, 1876, 1945, 2257
BmcAI AGTACT 1 cut(s) 2251
Bme1390I CCNGG 3 cut(s) 901, 1270, 2016
Bme18I GGWCC 2 cut(s) 4, 2362
BmgT120I GGNCC 2 cut(s) 4, 2362
BmiI GGNNCC 9 cut(s) 373, 1345, 1704, 1800, 1822, 1899, 2002, 2263, 2363
BmrFI CCNGG 3 cut(s) 901, 1270, 2016
BmsI GCATC 4 cut(s) 651, 1447, 1715, 1955
BpmI CTGGAG 1 cut(s) 995
BpuEI CTTGAG 2 cut(s) 392, 1910
BpuMI CCSGG 1 cut(s) 1270
BsaI GGTCTC 2 cut(s) 443, 2024
BsaJI CCNNGG 3 cut(s) 454, 1794, 2229
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 971, 1001
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 1276, 1354, 2271
Bse1I ACTGG 2 cut(s) 1528, 2229
Bse3DI GCAATG 4 cut(s) 664, 726, 759, 940
BseBI CCWGG 2 cut(s) 901, 2016
BseDI CCNNGG 3 cut(s) 454, 1794, 2229
BseGI GGATG 2 cut(s) 1278, 1730
BseLI CCNNNNNNNGG 4 cut(s) 13, 1276, 1354, 2271
BseMI GCAATG 4 cut(s) 664, 726, 759, 940
BseMII CTCAG 6 cut(s) 144, 299, 896, 1480, 2035, 2103
BseNI ACTGG 2 cut(s) 1528, 2229
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 5 cut(s) 1050, 1819, 1886, 1955, 2242
BseYI CCCAGC 5 cut(s) 176, 192, 1643, 1751, 1970
BsgI GTGCAG 2 cut(s) 1353, 2064
Bsh1236I CGCG 1 cut(s) 917
BshFI GGCC 5 cut(s) 413, 1112, 1294, 1746, 2228
BshNI GGYRCC 2 cut(s) 371, 2261
BsiHKAI GWGCWC 4 cut(s) 1045, 1263, 1566, 1719
BsiSI CCGG 1 cut(s) 1270
BslFI GGGAC 2 cut(s) 1839, 2375
BslI CCNNNNNNNGG 4 cut(s) 13, 1276, 1354, 2271
BsmAI GTCTC 3 cut(s) 443, 1488, 2024
BsmFI GGGAC 2 cut(s) 1839, 2375
BsmI GAATGC 3 cut(s) 924, 975, 1516
BsnI GGCC 5 cut(s) 413, 1112, 1294, 1746, 2228
Bso31I GGTCTC 2 cut(s) 443, 2024
Bsp1286I GDGCHC 8 cut(s) 278, 374, 1045, 1263, 1348, 1566, 1719, 1823
Bsp143I GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
Bsp19I CCATGG 2 cut(s) 454, 2229
BspACI CCGC 6 cut(s) 474, 917, 1460, 1911, 2081, 2201
BspANI GGCC 5 cut(s) 413, 1112, 1294, 1746, 2228
BspCNI CTCAG 6 cut(s) 143, 298, 895, 1479, 2034, 2104
BspFNI CGCG 1 cut(s) 917
BspHI TCATGA 3 cut(s) 1197, 2050, 2058
BspLI GGNNCC 9 cut(s) 373, 1345, 1704, 1800, 1822, 1899, 2002, 2263, 2363
BspMAI CTGCAG 1 cut(s) 2260
BspMI ACCTGC 2 cut(s) 1577, 2249
BspPI GGATC 2 cut(s) 505, 2401
BspT107I GGYRCC 2 cut(s) 371, 2261
BspTNI GGTCTC 2 cut(s) 443, 2024
BsrDI GCAATG 4 cut(s) 664, 726, 759, 940
BsrI ACTGG 2 cut(s) 1528, 2229
BssECI CCNNGG 3 cut(s) 454, 1794, 2229
BssMI GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
BssSI CACGAG 1 cut(s) 1772
BssT1I CCWWGG 2 cut(s) 454, 2229
Bst2BI CACGAG 1 cut(s) 1772
Bst2UI CCWGG 2 cut(s) 901, 2016
Bst4CI ACNGT 5 cut(s) 1499, 2042, 2306, 2356, 2366
Bst6I CTCTTC 3 cut(s) 439, 939, 2181
BstAPI GCANNNNNTGC 3 cut(s) 670, 758, 930
BstC8I GCNNGC 9 cut(s) 550, 671, 759, 1068, 1231, 1790, 1830, 1837, 2109
BstDEI CTNAG 7 cut(s) 130, 285, 882, 1412, 1466, 2021, 2112
BstDSI CCRYGG 3 cut(s) 454, 1794, 2229
BstF5I GGATG 2 cut(s) 1278, 1730
BstFNI CGCG 1 cut(s) 917
BstKTI GATC 9 cut(s) 216, 513, 915, 1218, 1354, 1521, 1782, 2121, 2396
BstMAI GTCTC 3 cut(s) 443, 1488, 2024
BstMBI GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
BstNI CCWGG 2 cut(s) 901, 2016
BstNSI RCATGY 4 cut(s) 761, 1070, 1435, 1792
BstSCI CCNGG 3 cut(s) 899, 1268, 2014
BstSFI CTRYAG 1 cut(s) 2256
BstSLI GKGCMC 1 cut(s) 374
BstUI CGCG 1 cut(s) 917
BstV1I GCAGC 5 cut(s) 1050, 1819, 1886, 1955, 2242
BstX2I RGATCY 1 cut(s) 2393
BstXI CCANNNNNNTGG 2 cut(s) 1120, 1815
BstYI RGATCY 1 cut(s) 2393
BsuI GTATCC 1 cut(s) 2135
BsuRI GGCC 5 cut(s) 413, 1112, 1294, 1746, 2228
BtgI CCRYGG 3 cut(s) 454, 1794, 2229
BtgZI GCGATG 1 cut(s) 923
BtsCI GGATG 2 cut(s) 1278, 1730
BtsI GCAGTG 1 cut(s) 1113
BtsIMutI CAGTG 2 cut(s) 1113, 1521
BveI ACCTGC 2 cut(s) 1577, 2249
Cac8I GCNNGC 9 cut(s) 550, 671, 759, 1068, 1231, 1790, 1830, 1837, 2109
CciI TCATGA 3 cut(s) 1197, 2050, 2058
Cfr13I GGNCC 2 cut(s) 4, 2362
CsiI ACCWGGT 1 cut(s) 2014
Csp6I GTAC 6 cut(s) 289, 597, 1242, 1685, 2250, 2262
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviQI GTAC 6 cut(s) 289, 597, 1242, 1685, 2250, 2262
DdeI CTNAG 7 cut(s) 130, 285, 882, 1412, 1466, 2021, 2112
DpnI GATC 9 cut(s) 215, 512, 914, 1217, 1353, 1520, 1781, 2120, 2395
DpnII GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
DraIII CACNNNGTG 1 cut(s) 1331
EaeI YGGCCR 2 cut(s) 1110, 2226
Eam1104I CTCTTC 3 cut(s) 439, 939, 2181
EarI CTCTTC 3 cut(s) 439, 939, 2181
Ecl136II GAGCTC 3 cut(s) 1043, 1261, 1564
Eco130I CCWWGG 2 cut(s) 454, 2229
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 6 cut(s) 278, 1045, 1263, 1348, 1566, 1823
Eco31I GGTCTC 2 cut(s) 443, 2024
Eco32I GATATC 1 cut(s) 1490
Eco47I GGWCC 2 cut(s) 4, 2362
Eco53kI GAGCTC 3 cut(s) 1043, 1261, 1564
Eco57I CTGAAG 2 cut(s) 264, 1887
EcoICRI GAGCTC 3 cut(s) 1043, 1261, 1564
EcoRII CCWGG 2 cut(s) 899, 2014
EcoRV GATATC 1 cut(s) 1490
EcoT14I CCWWGG 2 cut(s) 454, 2229
EcoT22I ATGCAT 5 cut(s) 508, 666, 759, 1539, 1730
EcoT38I GRGCYC 6 cut(s) 278, 1045, 1263, 1348, 1566, 1823
ErhI CCWWGG 2 cut(s) 454, 2229
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 2 cut(s) 1839, 2375
FauI CCCGC 2 cut(s) 910, 2088
FbaI TGATCA 4 cut(s) 213, 1518, 1779, 2118
Fnu4HI GCNGC 6 cut(s) 1064, 1461, 1833, 1875, 1944, 2256
FokI GGATG 2 cut(s) 1285, 1737
FriOI GRGCYC 6 cut(s) 278, 1045, 1263, 1348, 1566, 1823
Fsp4HI GCNGC 6 cut(s) 1064, 1461, 1833, 1875, 1944, 2256
FspBI CTAG 4 cut(s) 554, 684, 1424, 1742
GluI GCNGC 6 cut(s) 1064, 1461, 1833, 1875, 1944, 2256
GsaI CCCAGC 5 cut(s) 180, 196, 1647, 1755, 1974
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 5 cut(s) 413, 1112, 1294, 1746, 2228
HapII CCGG 1 cut(s) 1270
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 423, 1554
HinfI GANTC 2 cut(s) 1025, 1852
HpaII CCGG 1 cut(s) 1270
HphI GGTGA 6 cut(s) 647, 964, 1157, 2078, 2369, 2420
Hpy166II GTNNAC 4 cut(s) 382, 1429, 2038, 2206
Hpy188I TCNGA 6 cut(s) 133, 885, 1258, 1926, 2274, 2291
Hpy188III TCNNGA 9 cut(s) 316, 1046, 1198, 1493, 1675, 1772, 2051, 2059, 2122
Hpy8I GTNNAC 4 cut(s) 382, 1429, 2038, 2206
HpyAV CCTTC 7 cut(s) 62, 248, 288, 852, 1270, 1660, 2384
HpyCH4III ACNGT 5 cut(s) 1499, 2042, 2306, 2356, 2366
HpyCH4IV ACGT 1 cut(s) 1920
HpyF3I CTNAG 7 cut(s) 130, 285, 882, 1412, 1466, 2021, 2112
HpySE526I ACGT 1 cut(s) 1920
KpnI GGTACC 1 cut(s) 2265
Ksp22I TGATCA 4 cut(s) 213, 1518, 1779, 2118
Kzo9I GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
LmnI GCTCC 8 cut(s) 534, 1040, 1238, 1258, 1343, 1708, 1798, 1826
Lsp1109I GCAGC 5 cut(s) 1050, 1819, 1886, 1955, 2242
LweI GCATC 4 cut(s) 651, 1447, 1715, 1955
MabI ACCWGGT 1 cut(s) 2014
MaeI CTAG 4 cut(s) 554, 684, 1424, 1742
MaeII ACGT 1 cut(s) 1920
MaeIII GTNAC 6 cut(s) 16, 805, 1303, 1913, 2306, 2408
MalI GATC 9 cut(s) 215, 512, 914, 1217, 1353, 1520, 1781, 2120, 2395
MboI GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
MboII GAAGA 9 cut(s) 36, 80, 375, 456, 956, 1198, 1583, 2003, 2198
MfeI CAATTG 3 cut(s) 1237, 1809, 2028
MflI RGATCY 1 cut(s) 2393
MhlI GDGCHC 8 cut(s) 278, 374, 1045, 1263, 1348, 1566, 1719, 1823
MlsI TGGCCA 2 cut(s) 1112, 2228
MluNI TGGCCA 2 cut(s) 1112, 2228
MlyI GAGTC 2 cut(s) 1034, 1861
MmeI TCCRAC 3 cut(s) 100, 1018, 1875
Mox20I TGGCCA 2 cut(s) 1112, 2228
Mph1103I ATGCAT 5 cut(s) 508, 666, 759, 1539, 1730
MroXI GAANNNNTTC 1 cut(s) 1670
MscI TGGCCA 2 cut(s) 1112, 2228
MseI TTAA 2 cut(s) 606, 963
MslI CAYNNNNRTG 5 cut(s) 356, 762, 1071, 1542, 1793
Msp20I TGGCCA 2 cut(s) 1112, 2228
MspI CCGG 1 cut(s) 1270
MspR9I CCNGG 3 cut(s) 901, 1270, 2016
MunI CAATTG 3 cut(s) 1237, 1809, 2028
Mva1269I GAATGC 3 cut(s) 924, 975, 1516
MvaI CCWGG 2 cut(s) 901, 2016
MvnI CGCG 1 cut(s) 917
NciI CCSGG 1 cut(s) 1270
NcoI CCATGG 2 cut(s) 454, 2229
NdeII GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
NlaIV GGNNCC 9 cut(s) 373, 1345, 1704, 1800, 1822, 1899, 2002, 2263, 2363
NmeAIII GCCGAG 2 cut(s) 1199, 1772
NmuCI GTSAC 3 cut(s) 16, 2306, 2408
NsiI ATGCAT 5 cut(s) 508, 666, 759, 1539, 1730
NspI RCATGY 4 cut(s) 761, 1070, 1435, 1792
PaeI GCATGC 3 cut(s) 761, 1070, 1792
PagI TCATGA 3 cut(s) 1197, 2050, 2058
PaqCI CACCTGC 1 cut(s) 1577
PceI AGGCCT 1 cut(s) 413
PciI ACATGT 1 cut(s) 1431
PcsI WCGNNNNNNNCGW 1 cut(s) 1498
PctI GAATGC 3 cut(s) 924, 975, 1516
PdmI GAANNNNTTC 1 cut(s) 1670
PflMI CCANNNNNTGG 1 cut(s) 13
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 6 cut(s) 1065, 1462, 1834, 1876, 1945, 2257
PleI GAGTC 2 cut(s) 1033, 1860
PpsI GAGTC 2 cut(s) 1033, 1860
PscI ACATGT 1 cut(s) 1431
PshBI ATTAAT 1 cut(s) 606
PsiI TTATAA 1 cut(s) 653
Psp124BI GAGCTC 3 cut(s) 1045, 1263, 1566
Psp1406I AACGTT 1 cut(s) 1920
Psp6I CCWGG 2 cut(s) 899, 2014
PspFI CCCAGC 5 cut(s) 176, 192, 1643, 1751, 1970
PspGI CCWGG 2 cut(s) 899, 2014
PspN4I GGNNCC 9 cut(s) 373, 1345, 1704, 1800, 1822, 1899, 2002, 2263, 2363
PspPI GGNCC 2 cut(s) 4, 2362
PstI CTGCAG 1 cut(s) 2260
PsuI RGATCY 1 cut(s) 2393
RsaI GTAC 6 cut(s) 290, 598, 1243, 1686, 2251, 2263
RsaNI GTAC 6 cut(s) 289, 597, 1242, 1685, 2250, 2262
RseI CAYNNNNRTG 5 cut(s) 356, 762, 1071, 1542, 1793
SacI GAGCTC 3 cut(s) 1045, 1263, 1566
SaqAI TTAA 2 cut(s) 606, 963
SatI GCNGC 6 cut(s) 1064, 1461, 1833, 1875, 1944, 2256
Sau3AI GATC 9 cut(s) 213, 510, 912, 1215, 1351, 1518, 1779, 2118, 2393
Sau96I GGNCC 2 cut(s) 4, 2362
ScaI AGTACT 1 cut(s) 2251
SchI GAGTC 2 cut(s) 1034, 1861
ScrFI CCNGG 3 cut(s) 901, 1270, 2016
SduI GDGCHC 8 cut(s) 278, 374, 1045, 1263, 1348, 1566, 1719, 1823
SexAI ACCWGGT 1 cut(s) 2014
SfaNI GCATC 4 cut(s) 651, 1447, 1715, 1955
SfcI CTRYAG 1 cut(s) 2256
SinI GGWCC 2 cut(s) 4, 2362
SmiMI CAYNNNNRTG 5 cut(s) 356, 762, 1071, 1542, 1793
SmlI CTYRAG 2 cut(s) 407, 1889
SmoI CTYRAG 2 cut(s) 407, 1889
SphI GCATGC 3 cut(s) 761, 1070, 1792
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 6 cut(s) 474, 917, 1460, 1911, 2081, 2201
SspMI CTAG 4 cut(s) 554, 684, 1424, 1742
SstI GAGCTC 3 cut(s) 1045, 1263, 1566
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 3 cut(s) 899, 1268, 2014
StyI CCWWGG 2 cut(s) 454, 2229
TaaI ACNGT 5 cut(s) 1499, 2042, 2306, 2356, 2366
TaiI ACGT 1 cut(s) 1923
TaqI TCGA 5 cut(s) 1023, 1492, 1501, 1674, 1761
TatI WGTACW 3 cut(s) 288, 1241, 2249
TauI GCSGC 1 cut(s) 1463
Tru1I TTAA 2 cut(s) 606, 963
Tru9I TTAA 2 cut(s) 606, 963
TscAI CASTG 2 cut(s) 1120, 1528
TseFI GTSAC 3 cut(s) 16, 2306, 2408
TseI GCWGC 5 cut(s) 1063, 1832, 1874, 1943, 2255
Tsp45I GTSAC 3 cut(s) 16, 2306, 2408
TspGWI ACGGA 1 cut(s) 1405
TspRI CASTG 2 cut(s) 1120, 1528
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 4, 2362
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 3 cut(s) 844, 1842, 2094
XceI RCATGY 4 cut(s) 761, 1070, 1435, 1792
XmnI GAANNNNTTC 1 cut(s) 1670
XspI CTAG 4 cut(s) 554, 684, 1424, 1742
ZrmI AGTACT 1 cut(s) 2251
Zsp2I ATGCAT 5 cut(s) 508, 666, 759, 1539, 1730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.