RchiOBHm_Chr3g0452951

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010961
Physical Location & Seq
Forward (+)
3487497 .. 3490525
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
ATGAAGCAGAGCCAAAGTTCAGAGAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGGGAGAGAGGTCTCAGAGAGCTGTGTGGATAGTCTACTCACAGAGATGGTCTCCATGTACTGCAATCGCTTATACGCCAATAAGCCCGAGCTTGCTGCAAGTAGGATCGACGCTATTGGCTACCAGGTCGGCCATCAGCTCTCCGAGAGGTATACAATGGAGCGGCCTCGGTTTACTGATCATCTCGATGCAATTAAGTTCATATGCAAGGATTTCTGGTCTGAGCTTTTCAAGAAGCAGATAGACAACTTGAAGACCAATCATAGGGGTACCTTTGTGTTGCAAGATAATCGGTTTCGGTGGCTTTCACGCATGTCTCTTGATCCGTCTGCTGAAAATGGAGACGTGTCTCAAGAAAATTCTGAGGCCTCAGCTGAAAACAAGGCGGCACAAGTACCAAACATGCATCTCCATTTCTCTTGTGGAGTCATAAAGGGGGCTCTTCATAACTTGGGGATTGCTTGTGCTGTTTCTGCAGATACTTCCCACCTCCCTGCATGTTCATTTGTGGTTCGTATAAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

195

Amino Acids

22.28

Weight (kDa)

8.21

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 194 1.3e-40 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 2 cut(s) 94, 212
AciI CCGC 2 cut(s) 223, 446
AclWI GGATC 2 cut(s) 173, 377
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 3 cut(s) 119, 331, 456
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 2 cut(s) 292, 313
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 5 cut(s) 81, 151, 199, 286, 434
AluI AGCT 5 cut(s) 81, 151, 199, 286, 434
Alw26I GTCTC 5 cut(s) 76, 115, 381, 396, 414
AlwI GGATC 2 cut(s) 173, 377
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 190, 224, 426
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 418
Asp718I GGTACC 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 320
BbvCI CCTCAGC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 100, 201
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 332, 366
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 5 cut(s) 76, 115, 381, 396, 414
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 3 cut(s) 156, 224, 447
BlsI GCNGC 3 cut(s) 157, 225, 448
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 238, 475
BpiI GAAGAC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu10I CCTNAGC 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 396
BsaI GGTCTC 2 cut(s) 76, 115
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 4 cut(s) 87, 273, 414, 444
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 3 cut(s) 192, 226, 428
BshNI GGYRCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 5 cut(s) 76, 115, 381, 396, 414
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 3 cut(s) 192, 226, 428
Bso31I GGTCTC 2 cut(s) 76, 115
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 3 cut(s) 165, 238, 382
BspACI CCGC 2 cut(s) 223, 446
BspANI GGCC 3 cut(s) 192, 226, 428
BspCNI CTCAG 4 cut(s) 86, 274, 415, 443
BspLI GGNNCC 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 2 cut(s) 173, 377
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 2 cut(s) 76, 115
BsrBI CCGCTC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 3 cut(s) 165, 238, 382
BssNAI GTATAC 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 23, 507
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 4 cut(s) 73, 282, 423, 430
BstKTI GATC 3 cut(s) 168, 241, 385
BstMAI GTCTC 5 cut(s) 76, 115, 381, 396, 414
BstMBI GATC 3 cut(s) 165, 238, 382
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 3 cut(s) 376, 466, 561
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 320
BstZ17I GTATAC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 192, 226, 428
BtrI CACGTC 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 153
CseI GACGC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 3 cut(s) 118, 330, 455
CviAII CATG 4 cut(s) 115, 373, 463, 558
CviQI GTAC 3 cut(s) 118, 330, 455
DdeI CTNAG 4 cut(s) 73, 282, 423, 430
DpnI GATC 3 cut(s) 167, 240, 384
DpnII GATC 3 cut(s) 165, 238, 382
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 23, 507
EarI CTCTTC 2 cut(s) 23, 507
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 502
Eco31I GGTCTC 2 cut(s) 76, 115
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 4 cut(s) 118, 376, 466, 561
FatI CATG 4 cut(s) 114, 372, 462, 557
FauNDI CATATG 1 cut(s) 263
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 2 cut(s) 94, 212
Fnu4HI GCNGC 3 cut(s) 156, 224, 447
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 3 cut(s) 156, 224, 447
GluI GCNGC 3 cut(s) 156, 224, 447
HaeIII GGCC 3 cut(s) 192, 226, 428
HgaI GACGC 1 cut(s) 179
Hin1II CATG 4 cut(s) 118, 376, 466, 561
HinfI GANTC 1 cut(s) 486
Hpy166II GTNNAC 3 cut(s) 95, 213, 234
Hpy188I TCNGA 5 cut(s) 22, 76, 205, 283, 424
Hpy188III TCNNGA 4 cut(s) 245, 292, 380, 413
Hpy8I GTNNAC 3 cut(s) 95, 213, 234
Hpy99I CGWCG 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 8 cut(s) 123, 158, 251, 267, 343, 466, 536, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 4 cut(s) 73, 282, 423, 430
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 4 cut(s) 118, 376, 466, 561
KpnI GGTACC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 165, 238, 382
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 4 cut(s) 170, 197, 262, 567
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 238, 475
MabI ACCWGGT 1 cut(s) 183
MaeII ACGT 1 cut(s) 405
MalI GATC 3 cut(s) 167, 240, 384
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 165, 238, 382
MboII GAAGA 4 cut(s) 37, 40, 325, 494
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 2 cut(s) 252, 418
MlyI GAGTC 1 cut(s) 495
MnlI CCTC 6 cut(s) 61, 201, 237, 418, 439, 560
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 104, 246
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeI CATATG 1 cut(s) 263
NdeII GATC 3 cut(s) 165, 238, 382
NlaIII CATG 4 cut(s) 118, 376, 466, 561
NlaIV GGNNCC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 3 cut(s) 376, 466, 561
PceI AGGCCT 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 507
PkrI GCNGC 3 cut(s) 157, 225, 448
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 331
PstI CTGCAG 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 119, 331, 456
RsaNI GTAC 3 cut(s) 118, 330, 455
RseI CAYNNNNRTG 2 cut(s) 104, 246
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 156, 224, 447
Sau3AI GATC 3 cut(s) 165, 238, 382
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 502
SexAI ACCWGGT 1 cut(s) 183
SfaNI GCATC 2 cut(s) 238, 475
SfcI CTRYAG 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 104, 246
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 2 cut(s) 252, 418
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 2 cut(s) 223, 446
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 168, 246
TasI AATT 2 cut(s) 252, 418
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 226, 449
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 17, 250, 494, 552
TspGWI ACGGA 1 cut(s) 375
XapI RAATTY 1 cut(s) 418
XceI RCATGY 3 cut(s) 376, 466, 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XmiI GTMKAC 2 cut(s) 94, 212
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.