Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015646

Physical Location & Seq

Genomic Coordinates Forward (+)

4487252 .. 4489830

Gene Structure 2579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGATCATCTCAAGGGTATGGTCACAAGAACTTGCTAGCACCCCACCCAGAGGTTGGAACTCCTATAACGCAATCAGCTGGACTATTACAGAGGAAGAGTTCTTGCAAAATGCTGAAATCATCTCCAAGAAGTTACTTCCTCATGGATATGAGTATGTAGTTGTGGACCATCTGTGGTATAGGAGAAATGTGACCTGTGCTAGTGTAGACTCTCTCGGAGTTGATGTAATTGATGAATGGGGGAGACCGATGCCTGACCCAGATAGGTGGCCTAGCTCCAGAGGTGGGAAAGGGTTTACTGAAGTGGCAGACAGAGTACATAAAATGGGTTTGAAGTTTGGAATTAATGTTATGAGAGGAATAAACACACAAGCTGTAAAAGCCAATACCCATATCTTGGATCCTCTCTCGGGGAATGTTTATGATTATTTCAATGGAAAAATTTGGACTGCACAAGATATAGGGATCAAGGAGAGGACTTGTGCTCGGATGCAAAATGGTTTCATGAGTGTGGATACAACCTTGCAAGCTGGAAGGTTCTTCTTGGCAGACCTCTATCAACTGTATGCCAATTGGGGAGTTGATTTTTTGAAACAGGACTGCGTGTTTGGTAATGACTTGGATATGAATGAAATATATCATGCATCATGGCTTTTGAGGAATGATAGACCTATATTGTATTCTGTATCTCCTGGAATTGGAGCAACACCCATGATGGCCAAAAGTGTAAGTGGTGTAGTGAACATGTACAGTATAAACGGGCATAACTGGGATGACTGGGAAGATGTTGTTGCCCGTTTTGATGTTGCCAGGGATTTTGCTGCTGCTAATATGATTGGAGCAAACAGCTCGTGGCCTGACTTAGATATGCTTCCCCTGGGATGGCTTAGTGATGCAGGTTCAAATGAAGGTCCACACAGAACAACTAACCTCACATTAGAGGAGCAAAGAACTATGATGACCTTGTGGTGCATGGCCAAGTCTCCTCTCATGTTTGGAGGAGATCTGAGAAAGCTTGATGATACAACTTACAGTATCCTAACAAATCCTACCTTGCTAGAGGTCAATTCTTTTAGCTCAAATAATAAGGAGTTTCCATACATAAAATCTGAAGGACTTCGCTCTTGGGTTGCAACTGGAAGACAACGAGAAATATATGTTGCTTTATTTAATCTGAACTCAAAGAAGACTACTATAACCGCACAAAAATCAGACTTAGCCAGGGCACTTCCTGGGACAACATTGACTACTAGAGCTTCCTGCAAAGGCAAAGAAGTATGGAGCCGACTAGACTTGGGGATTATAGACCACTCCATATCCATTGCTGTAGAAACCCATGGGACTGCACTAGTTGTCCTACATTGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

456

Amino Acids

51.24

Weight (kDa)

5.84

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	187 - 356	3.5e-10	Alpha galactosidase A
Melibiase_C	PF17801	372 - 452	1.7e-06	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05560
rosa_chinensis	RchiOBHm_Chr3g0454341
rosa_laevigata	RLG00000025459
rosa_multiflora	Rmu_sc0000006.1_g000022 Rmu_sc0007209.1_g000014
rosa_roxburghii	Rroxscaffold_165G00437170 Rroxscaffold_6G00425190
rosa_rugosa	Rorug02G0654200 Rorug02G0654300 Rorug02G0654400 Rorug02G0654500
rosa_samantha	Rh3AG058400 Rh3BG060100 Rh3CG059200 Rh3DG060500
rosa_wichuraiana	Rw3G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	887
AccB7I	CCANNNNNTGG	2 cut(s)	54, 397
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	1 cut(s)	1200
AclWI	GGATC	3 cut(s)	395, 408, 473
AcoI	YGGCCR	2 cut(s)	717, 975
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	2 cut(s)	321, 1131
AfaI	GTAC	2 cut(s)	318, 749
AfiI	CCNNNNNNNGG	7 cut(s)	50, 54, 285, 397, 410, 698, 882
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	334, 433, 592, 903
AhlI	ACTAGT	1 cut(s)	1348
AjnI	CCWGG	5 cut(s)	691, 809, 876, 1220, 1231
AluBI	AGCT	8 cut(s)	78, 276, 374, 530, 849, 1015, 1077, 1256
AluI	AGCT	8 cut(s)	78, 276, 374, 530, 849, 1015, 1077, 1256
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	238, 987
AlwI	GGATC	3 cut(s)	395, 408, 473
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	4 cut(s)	269, 717, 854, 975
ApeKI	GCWGC	2 cut(s)	821, 824
ApoI	RAATTY	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspS9I	GGNCC	2 cut(s)	166, 911
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	166, 911
BaeGI	GKGCMC	1 cut(s)	1228
BalI	TGGCCA	2 cut(s)	719, 977
BamHI	GGATCC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	850
BbsI	GAAGAC	2 cut(s)	1147, 1193
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	808, 811
BccI	CCATC	3 cut(s)	177, 709, 876
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BciT130I	CCWGG	5 cut(s)	693, 811, 878, 1222, 1233
BciVI	GTATCC	2 cut(s)	508, 1046
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	238, 987
BcuI	ACTAGT	1 cut(s)	1348
BfaI	CTAG	7 cut(s)	36, 201, 273, 1058, 1251, 1289, 1349
BfmI	CTRYAG	1 cut(s)	1326
BfuAI	ACCTGC	1 cut(s)	887
BfuI	GTATCC	2 cut(s)	508, 1046
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	2 cut(s)	822, 825
BlsI	GCNGC	2 cut(s)	823, 826
Bme1390I	CCNGG	5 cut(s)	693, 811, 878, 1222, 1233
Bme18I	GGWCC	2 cut(s)	166, 911
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	166, 911
BmiI	GGNNCC	2 cut(s)	402, 1283
BmrFI	CCNGG	5 cut(s)	693, 811, 878, 1222, 1233
BmrI	ACTGGG	2 cut(s)	778, 787
BmsI	GCATC	4 cut(s)	240, 480, 653, 883
BmtI	GCTAGC	1 cut(s)	39
BmuI	ACTGGG	2 cut(s)	778, 787
BpiI	GAAGAC	2 cut(s)	1147, 1193
BpmI	CTGGAG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	6 cut(s)	810, 876, 877, 1221, 1232, 1336
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	7 cut(s)	50, 54, 285, 397, 410, 698, 882
Bse1I	ACTGG	3 cut(s)	773, 782, 1141
Bse3DI	GCAATG	2 cut(s)	1320, 1360
BseBI	CCWGG	5 cut(s)	693, 811, 878, 1222, 1233
BseDI	CCNNGG	6 cut(s)	810, 876, 877, 1221, 1232, 1336
BseGI	GGATG	3 cut(s)	495, 778, 887
BseLI	CCNNNNNNNGG	7 cut(s)	50, 54, 285, 397, 410, 698, 882
BseMI	GCAATG	2 cut(s)	1320, 1360
BseMII	CTCAG	1 cut(s)	998
BseNI	ACTGG	3 cut(s)	773, 782, 1141
BseRI	GAGGAG	3 cut(s)	956, 975, 1014
BseSI	GKGCMC	1 cut(s)	1228
BseXI	GCAGC	2 cut(s)	808, 811
BsgI	GTGCAG	2 cut(s)	435, 1329
BshFI	GGCC	4 cut(s)	271, 719, 856, 977
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	409
BslFI	GGGAC	2 cut(s)	1249, 1354
BslI	CCNNNNNNNGG	7 cut(s)	50, 54, 285, 397, 410, 698, 882
BsmAI	GTCTC	2 cut(s)	238, 987
BsmFI	GGGAC	2 cut(s)	1249, 1354
BsnI	GGCC	4 cut(s)	271, 719, 856, 977
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	487, 1228
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	3, 400, 465, 1003
Bsp19I	CCATGG	1 cut(s)	1336
BspACI	CCGC	1 cut(s)	1200
BspANI	GGCC	4 cut(s)	271, 719, 856, 977
BspCNI	CTCAG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	402, 1283
BspMI	ACCTGC	1 cut(s)	887
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	395, 408, 473
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	1320, 1360
BsrGI	TGTACA	1 cut(s)	747
BsrI	ACTGG	3 cut(s)	773, 782, 1141
BssECI	CCNNGG	6 cut(s)	810, 876, 877, 1221, 1232, 1336
BssMI	GATC	4 cut(s)	3, 400, 465, 1003
BssSI	CACGAG	1 cut(s)	850
BssT1I	CCWWGG	1 cut(s)	1336
Bst2BI	CACGAG	1 cut(s)	850
Bst2UI	CCWGG	5 cut(s)	693, 811, 878, 1222, 1233
Bst4CI	ACNGT	3 cut(s)	564, 752, 1034
Bst6I	CTCTTC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	37, 528
BstDEI	CTNAG	4 cut(s)	862, 887, 1007, 1216
BstDSI	CCRYGG	1 cut(s)	1336
BstF5I	GGATG	3 cut(s)	495, 778, 887
BstKTI	GATC	4 cut(s)	6, 403, 468, 1006
BstMAI	GTCTC	2 cut(s)	238, 987
BstMBI	GATC	4 cut(s)	3, 400, 465, 1003
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	5 cut(s)	693, 811, 878, 1222, 1233
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	5 cut(s)	691, 809, 876, 1220, 1231
BstSFI	CTRYAG	1 cut(s)	1326
BstSLI	GKGCMC	1 cut(s)	1228
BstV1I	GCAGC	2 cut(s)	808, 811
BstV2I	GAAGAC	2 cut(s)	1147, 1193
BstX2I	RGATCY	2 cut(s)	400, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	2 cut(s)	400, 1003
BsuI	GTATCC	2 cut(s)	508, 1046
BsuRI	GGCC	4 cut(s)	271, 719, 856, 977
BtgI	CCRYGG	1 cut(s)	1336
BtsCI	GGATG	3 cut(s)	495, 778, 887
BveI	ACCTGC	1 cut(s)	887
Cac8I	GCNNGC	2 cut(s)	37, 528
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	166, 911
Csp6I	GTAC	2 cut(s)	317, 748
CviAII	CATG	9 cut(s)	143, 505, 641, 648, 712, 745, 973, 991, 1337
CviQI	GTAC	2 cut(s)	317, 748
DdeI	CTNAG	4 cut(s)	862, 887, 1007, 1216
DpnI	GATC	4 cut(s)	5, 402, 467, 1005
DpnII	GATC	4 cut(s)	3, 400, 465, 1003
EaeI	YGGCCR	2 cut(s)	717, 975
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	1336
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	166, 911
Eco57I	CTGAAG	2 cut(s)	321, 1131
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	5 cut(s)	691, 809, 876, 1220, 1231
EcoT14I	CCWWGG	1 cut(s)	1336
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	1336
FaeI	CATG	9 cut(s)	146, 508, 644, 651, 715, 748, 976, 994, 1340
FaqI	GGGAC	2 cut(s)	1249, 1354
FatI	CATG	9 cut(s)	142, 504, 640, 647, 711, 744, 972, 990, 1336
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	822, 825
FokI	GGATG	3 cut(s)	502, 785, 894
Fsp4HI	GCNGC	2 cut(s)	822, 825
FspBI	CTAG	7 cut(s)	36, 201, 273, 1058, 1251, 1289, 1349
GluI	GCNGC	2 cut(s)	822, 825
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	271, 719, 856, 977
Hin1II	CATG	9 cut(s)	146, 508, 644, 651, 715, 748, 976, 994, 1340
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	1 cut(s)	209
Hpy166II	GTNNAC	5 cut(s)	166, 208, 297, 742, 914
Hpy188I	TCNGA	6 cut(s)	218, 489, 1008, 1111, 1176, 1213
Hpy188III	TCNNGA	2 cut(s)	279, 505
Hpy8I	GTNNAC	5 cut(s)	166, 208, 297, 742, 914
HpyAV	CCTTC	3 cut(s)	528, 902, 1106
HpyCH4III	ACNGT	3 cut(s)	564, 752, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	4 cut(s)	862, 887, 1007, 1216
Hsp92II	CATG	9 cut(s)	146, 508, 644, 651, 715, 748, 976, 994, 1340
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 400, 465, 1003
LmnI	GCTCC	5 cut(s)	281, 701, 839, 943, 1281
Lsp1109I	GCAGC	2 cut(s)	808, 811
LweI	GCATC	4 cut(s)	240, 480, 653, 883
MaeI	CTAG	7 cut(s)	36, 201, 273, 1058, 1251, 1289, 1349
MaeIII	GTNAC	3 cut(s)	21, 132, 190
MalI	GATC	4 cut(s)	5, 402, 467, 1005
MboI	GATC	4 cut(s)	3, 400, 465, 1003
MboII	GAAGA	5 cut(s)	107, 532, 794, 1152, 1198
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	2 cut(s)	400, 1003
MhlI	GDGCHC	2 cut(s)	487, 1228
MlsI	TGGCCA	2 cut(s)	719, 977
MluCI	AATT	7 cut(s)	228, 342, 441, 571, 696, 1066, 1366
MluNI	TGGCCA	2 cut(s)	719, 977
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	35
Mox20I	TGGCCA	2 cut(s)	719, 977
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	1116
MscI	TGGCCA	2 cut(s)	719, 977
MseI	TTAA	2 cut(s)	345, 1170
MslI	CAYNNNNRTG	2 cut(s)	147, 509
Msp20I	TGGCCA	2 cut(s)	719, 977
MspA1I	CMGCKG	1 cut(s)	78
MspR9I	CCNGG	5 cut(s)	693, 811, 878, 1222, 1233
MunI	CAATTG	1 cut(s)	571
MvaI	CCWGG	5 cut(s)	693, 811, 878, 1222, 1233
MwoI	GCNNNNNNNGC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	1336
NdeII	GATC	4 cut(s)	3, 400, 465, 1003
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	9 cut(s)	146, 508, 644, 651, 715, 748, 976, 994, 1340
NlaIV	GGNNCC	2 cut(s)	402, 1283
NmuCI	GTSAC	2 cut(s)	21, 190
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	748
PagI	TCATGA	1 cut(s)	504
PasI	CCCWGGG	1 cut(s)	877
PciI	ACATGT	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	1116
PflMI	CCANNNNNTGG	2 cut(s)	54, 397
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	823, 826
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PscI	ACATGT	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	5 cut(s)	691, 809, 876, 1220, 1231
PspGI	CCWGG	5 cut(s)	691, 809, 876, 1220, 1231
PspN4I	GGNNCC	2 cut(s)	402, 1283
PspPI	GGNCC	2 cut(s)	166, 911
PsuI	RGATCY	2 cut(s)	400, 1003
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	318, 749
RsaNI	GTAC	2 cut(s)	317, 748
RseI	CAYNNNNRTG	2 cut(s)	147, 509
SaqAI	TTAA	2 cut(s)	345, 1170
SatI	GCNGC	2 cut(s)	822, 825
Sau3AI	GATC	4 cut(s)	3, 400, 465, 1003
Sau96I	GGNCC	2 cut(s)	166, 911
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	5 cut(s)	693, 811, 878, 1222, 1233
SduI	GDGCHC	2 cut(s)	487, 1228
SfaNI	GCATC	4 cut(s)	240, 480, 653, 883
SfcI	CTRYAG	1 cut(s)	1326
SinI	GGWCC	2 cut(s)	166, 911
SmiMI	CAYNNNNRTG	2 cut(s)	147, 509
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	1348
Sse9I	AATT	7 cut(s)	228, 342, 441, 571, 696, 1066, 1366
SsiI	CCGC	1 cut(s)	1200
SspMI	CTAG	7 cut(s)	36, 201, 273, 1058, 1251, 1289, 1349
StyD4I	CCNGG	5 cut(s)	691, 809, 876, 1220, 1231
StyI	CCWWGG	1 cut(s)	1336
TaaI	ACNGT	3 cut(s)	564, 752, 1034
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	7 cut(s)	228, 342, 441, 571, 696, 1066, 1366
TatI	WGTACW	2 cut(s)	316, 747
Tru1I	TTAA	2 cut(s)	345, 1170
Tru9I	TTAA	2 cut(s)	345, 1170
TseFI	GTSAC	2 cut(s)	21, 190
TseI	GCWGC	2 cut(s)	821, 824
Tsp45I	GTSAC	2 cut(s)	21, 190
TspDTI	ATGAA	5 cut(s)	249, 493, 641, 645, 921
Van91I	CCANNNNNTGG	2 cut(s)	54, 397
VpaK11BI	GGWCC	2 cut(s)	166, 911
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	441
XceI	RCATGY	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	7 cut(s)	36, 201, 273, 1058, 1251, 1289, 1349
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.