Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6214671 .. 6218621

Gene Structure 3951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAGCTCAAAGACTCTATTCGCTATCGGAGCCCTAGCAGCTCTGCTGTTTGTGTCATCGGTTTTCGCAGACGACGTCGTCGTGCTGACGGAGGACAACTTCGAGAAGGAGGTCGGTCAAGATCGTCCTGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGACATTGTAAGAAGCTTGCCCCAGAGTATGAGAAGCTTGGCGCAAGTTTCAAGAAAGCAAAGTCTGTTTTGATCGCAAAGGTGGACTGTGATGAGCACAAGAGTGTTTGTGGCAAGTTTGGAGTTTCTGGTTACCCCACAATTCAATGGTTCCCAAAAGGGTCCCTAGAACCCAAAAAGTATGAAGGTGCCCGTACTTCAGAAGCTCTTGTTGAGTATGTGAATAAGGAAGCAGGGACCAATGTGAAGATAGCTGCAATCCCATCCAGTGTTGTGGTGCTTACACAGGATAATTTTGATGATGTTGTCCTGGACAAAACAAAAGATGTACTGGTGGAGTTCTATGCACCATGGTGCGGACATTGCAAATCGCTTGCTCCTACTTATGAGAAGGTTGCAGCAGCATTTAAGTTCGATGGAGATGTAGTGATTGCTAATGTTGATGCTGACAAATACAAGGATATAGCTGAGAAGTATGGAGTGAGTGGATATCCTACATTGAAATTTTTCCCAAGGGGCAACAAGGATGGTGAAGAGTATGGTGGGGGCAGAGATTTAGAAGATTTTGTAAATTTCATCAATGAGAAATGTGGGACTAGCAGAGATGCGAAAGGGCAACTTACTTCCAAAGCGGGAATAGTCGCACATTTGGACGAATTAGTGAAGGAGTTCGTGAAAGCTGGCAGTGAGGAGAAGAAGGCCATCGTTTCCAAGATCGAAGAGGAAGTTGGAAAGCTCGAGGGTTCTGCTGCAAGATATGGTAAGATCTACGTGAATGCTGCCAAGAAGTCTTTGGCAAAAGGTGGTGACTACGCTAAGAATGAAATTCAGCGGCTTGAACGCATTCTCGAAAAGTCTGTCAACCCGACAAAGGCTGATGAGTTCACTCTCAAGAAGAACGTTCTATACACCTTCTCTTCATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0007275 GO:0008150 GO:0009505 GO:0009553 GO:0009566 GO:0009567 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019953 GO:0022414 GO:0030312 GO:0031090 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046686 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0051704 GO:0051716 GO:0061458 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ERp29 Thioredoxin

Protein Analysis

362

Amino Acids

39.68

Weight (kDa)

6.21

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	26 - 128	1.6e-33	Thioredoxin
Thioredoxin_2	PF13098	39 - 125	7e-07	Thioredoxin-like domain
OST3_OST6	PF04756	53 - 138	1.2e-07	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	144 - 247	6.3e-33	Thioredoxin
OST3_OST6	PF04756	144 - 251	5.5e-06	OST3 / OST6 family, transporter family
ERp29	PF07749	265 - 358	1.8e-24	Endoplasmic reticulum protein ERp29, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47470 AT2G47470 AT2G47470 AT2G47470
fragaria_vesca	FvH4_6g07230
malus_domestica	MD04G1195300.v1.1 MD12G1207400.v1.1
prunus_persica	Prupe.6G315000_v2.0.a1
pyrus_communis	pycom04g17250
rosa_chinensis	RchiOBHm_Chr3g0456861
rosa_laevigata	RLG00000025273
rosa_multiflora	Rmu_sc0000133.1_g000018
rosa_roxburghii	Rroxscaffold_6G00422430
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh3BG078600 Rh3CG078400
rosa_wichuraiana	Rw3G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	3 cut(s)	516, 791, 991
AclI	AACGTT	1 cut(s)	1059
AcsI	RAATTY	3 cut(s)	662, 730, 984
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	355, 489
AfiI	CCNNNNNNNGG	3 cut(s)	158, 515, 1030
AgsI	TTSAA	4 cut(s)	211, 305, 661, 998
AjnI	CCWGG	2 cut(s)	152, 468
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AleI	CACNNNNGTG	2 cut(s)	261, 511
AluBI	AGCT	9 cut(s)	6, 41, 175, 196, 365, 413, 626, 839, 895
AluI	AGCT	9 cut(s)	6, 41, 175, 196, 365, 413, 626, 839, 895
Alw21I	GWGCWC	2 cut(s)	8, 258
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	858
ApeKI	GCWGC	6 cut(s)	38, 413, 557, 560, 908, 938
ApoI	RAATTY	3 cut(s)	662, 730, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	1002, 1034
Asp700I	GAANNNNTTC	3 cut(s)	665, 827, 1002
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	321, 396
AsuHPI	GGTGA	2 cut(s)	701, 977
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	2 cut(s)	321, 396
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	8, 34
Bbv12I	GWGCWC	2 cut(s)	8, 258
BbvI	GCAGC	6 cut(s)	50, 400, 569, 572, 895, 925
BccI	CCATC	4 cut(s)	430, 569, 680, 869
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	2 cut(s)	154, 470
BfaI	CTAG	3 cut(s)	35, 326, 756
BglII	AGATCT	1 cut(s)	924
BisI	GCNGC	7 cut(s)	39, 414, 558, 561, 909, 939, 992
BlsI	GCNGC	7 cut(s)	40, 415, 559, 562, 910, 940, 993
Bme1390I	CCNGG	2 cut(s)	154, 470
Bme18I	GGWCC	2 cut(s)	321, 396
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	2 cut(s)	321, 396
BmiI	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
BmrFI	CCNGG	2 cut(s)	154, 470
BmsI	GCATC	2 cut(s)	592, 754
BpuEI	CTTGAG	1 cut(s)	1034
BsaAI	YACGTR	1 cut(s)	931
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	152, 509, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 515, 1030
Bse1I	ACTGG	2 cut(s)	426, 495
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	154, 470
BseDI	CCNNGG	3 cut(s)	152, 509, 671
BseGI	GGATG	2 cut(s)	422, 691
BseLI	CCNNNNNNNGG	3 cut(s)	158, 515, 1030
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	426, 495
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	6 cut(s)	50, 400, 569, 572, 895, 925
BshFI	GGCC	1 cut(s)	860
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	8, 258
BsiHKCI	CYCGRG	1 cut(s)	896
BslFI	GGGAC	3 cut(s)	307, 409, 766
BslI	CCNNNNNNNGG	3 cut(s)	158, 515, 1030
BsmFI	GGGAC	3 cut(s)	307, 409, 766
BsmI	GAATGC	2 cut(s)	940, 1002
BsnI	GGCC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	4 cut(s)	8, 34, 258, 352
Bsp143I	GATC	4 cut(s)	121, 231, 873, 924
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	3 cut(s)	516, 791, 991
BspANI	GGCC	1 cut(s)	860
BspCNI	CTCAG	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	1085
BspLI	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	426, 495
BssECI	CCNNGG	3 cut(s)	152, 509, 671
BssMI	GATC	4 cut(s)	121, 231, 873, 924
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	509, 671
Bst2UI	CCWGG	2 cut(s)	154, 470
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	3 cut(s)	687, 873, 1081
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	931
BstC8I	GCNNGC	3 cut(s)	177, 534, 841
BstDEI	CTNAG	2 cut(s)	627, 975
BstDSI	CCRYGG	1 cut(s)	509
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	422, 691
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	124, 234, 876, 927
BstMBI	GATC	4 cut(s)	121, 231, 873, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 38, 522
BstNI	CCWGG	2 cut(s)	154, 470
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	152, 468
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	6 cut(s)	50, 400, 569, 572, 895, 925
BstX2I	RGATCY	1 cut(s)	924
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	924
BsuRI	GGCC	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	422, 691
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	2 cut(s)	433, 850
Cac8I	GCNNGC	3 cut(s)	177, 534, 841
CciI	TCATGA	1 cut(s)	1085
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	321, 396
Csp6I	GTAC	2 cut(s)	354, 488
CviAII	CATG	2 cut(s)	510, 1086
CviQI	GTAC	2 cut(s)	354, 488
DdeI	CTNAG	2 cut(s)	627, 975
DpnI	GATC	4 cut(s)	123, 233, 875, 926
DpnII	GATC	4 cut(s)	121, 231, 873, 924
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	687, 873, 1081
EarI	CTCTTC	3 cut(s)	687, 873, 1081
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	509, 671
Eco24I	GRGCYC	2 cut(s)	8, 34
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	2 cut(s)	321, 396
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	321
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	152, 468
EcoRV	GATATC	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	509, 671
EcoT38I	GRGCYC	2 cut(s)	8, 34
ErhI	CCWWGG	2 cut(s)	509, 671
FaeI	CATG	2 cut(s)	513, 1089
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	3 cut(s)	307, 409, 766
FatI	CATG	2 cut(s)	509, 1085
FauI	CCCGC	1 cut(s)	784
Fnu4HI	GCNGC	7 cut(s)	39, 414, 558, 561, 909, 939, 992
FokI	GGATG	2 cut(s)	409, 698
FriOI	GRGCYC	2 cut(s)	8, 34
Fsp4HI	GCNGC	7 cut(s)	39, 414, 558, 561, 909, 939, 992
FspBI	CTAG	3 cut(s)	35, 326, 756
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	7 cut(s)	39, 414, 558, 561, 909, 939, 992
HaeIII	GGCC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	513, 1089
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	2 cut(s)	173, 194
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	701, 977
Hpy166II	GTNNAC	4 cut(s)	161, 244, 1021, 1044
Hpy188I	TCNGA	2 cut(s)	29, 361
Hpy188III	TCNNGA	7 cut(s)	103, 119, 211, 832, 1007, 1051, 1086
Hpy8I	GTNNAC	4 cut(s)	161, 244, 1021, 1044
Hpy99I	CGWCG	4 cut(s)	77, 80, 83, 140
HpyAV	CCTTC	6 cut(s)	100, 338, 544, 817, 850, 1081
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	3 cut(s)	75, 930, 1059
HpyCH4V	TGCA	5 cut(s)	416, 506, 525, 557, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 38, 522
HpyF3I	CTNAG	2 cut(s)	627, 975
HpySE526I	ACGT	3 cut(s)	75, 930, 1059
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	513, 1089
HspAI	GCGC	1 cut(s)	201
KflI	GGGWCCC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	121, 231, 873, 924
LmnI	GCTCC	3 cut(s)	29, 154, 541
Lsp1109I	GCAGC	6 cut(s)	50, 400, 569, 572, 895, 925
LweI	GCATC	2 cut(s)	592, 754
MaeI	CTAG	3 cut(s)	35, 326, 756
MaeII	ACGT	3 cut(s)	75, 930, 1059
MaeIII	GTNAC	2 cut(s)	290, 965
MalI	GATC	4 cut(s)	123, 233, 875, 926
MboI	GATC	4 cut(s)	121, 231, 873, 924
MboII	GAAGA	8 cut(s)	418, 704, 731, 865, 890, 1066, 1068, 1074
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	4 cut(s)	8, 34, 258, 352
MluCI	AATT	6 cut(s)	300, 451, 662, 730, 815, 984
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	5 cut(s)	85, 103, 841, 874, 892
MroXI	GAANNNNTTC	3 cut(s)	665, 827, 1002
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	3 cut(s)	261, 511, 1084
MspA1I	CMGCKG	1 cut(s)	991
MspR9I	CCNGG	2 cut(s)	154, 470
Mva1269I	GAATGC	2 cut(s)	940, 1002
MvaI	CCWGG	2 cut(s)	154, 470
MwoI	GCNNNNNNNGC	3 cut(s)	29, 38, 522
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	4 cut(s)	121, 231, 873, 924
NlaIII	CATG	2 cut(s)	513, 1089
NlaIV	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
NmuCI	GTSAC	1 cut(s)	965
OliI	CACNNNNGTG	2 cut(s)	261, 511
PaeR7I	CTCGAG	1 cut(s)	896
PagI	TCATGA	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 78
PctI	GAATGC	2 cut(s)	940, 1002
PdmI	GAANNNNTTC	3 cut(s)	665, 827, 1002
PflFI	GACNNNGTC	2 cut(s)	74, 77
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	7 cut(s)	40, 415, 559, 562, 910, 940, 993
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	931
PpuMI	RGGWCCY	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	152, 468
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	152, 468
PspN4I	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
PspPI	GGNCC	2 cut(s)	321, 396
PspPPI	RGGWCCY	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	896
PsrI	GAACNNNNNNTAC	2 cut(s)	1049, 1081
PsuI	RGATCY	1 cut(s)	924
PsyI	GACNNNGTC	2 cut(s)	74, 77
RsaI	GTAC	2 cut(s)	355, 489
RsaNI	GTAC	2 cut(s)	354, 488
RseI	CAYNNNNRTG	3 cut(s)	261, 511, 1084
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	7 cut(s)	39, 414, 558, 561, 909, 939, 992
Sau3AI	GATC	4 cut(s)	121, 231, 873, 924
Sau96I	GGNCC	2 cut(s)	321, 396
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	154, 470
SduI	GDGCHC	4 cut(s)	8, 34, 258, 352
SfaNI	GCATC	2 cut(s)	592, 754
Sfr274I	CTCGAG	1 cut(s)	896
SinI	GGWCC	2 cut(s)	321, 396
SlaI	CTCGAG	1 cut(s)	896
SmiMI	CAYNNNNRTG	3 cut(s)	261, 511, 1084
SmlI	CTYRAG	2 cut(s)	896, 1049
SmoI	CTYRAG	2 cut(s)	896, 1049
Sse9I	AATT	6 cut(s)	300, 451, 662, 730, 815, 984
SsiI	CCGC	3 cut(s)	516, 791, 991
SspMI	CTAG	3 cut(s)	35, 326, 756
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	152, 468
StyI	CCWWGG	2 cut(s)	509, 671
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	3 cut(s)	78, 933, 1062
TaqI	TCGA	6 cut(s)	102, 138, 573, 876, 897, 1008
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	300, 451, 662, 730, 815, 984
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	994
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	433, 850
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	6 cut(s)	38, 413, 557, 560, 908, 938
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	5 cut(s)	357, 724, 996, 1068, 1074
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	433, 850
Tth111I	GACNNNGTC	2 cut(s)	74, 77
VpaK11BI	GGWCC	2 cut(s)	321, 396
XapI	RAATTY	3 cut(s)	662, 730, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XhoI	CTCGAG	1 cut(s)	896
XmnI	GAANNNNTTC	3 cut(s)	665, 827, 1002
XspI	CTAG	3 cut(s)	35, 326, 756
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.