RchiOBHm_Chr3g0457981

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015816
Physical Location & Seq
Reverse (-)
6865477 .. 6867783
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
ATGCTGATCAACTTTGTTCTTACTCAAATTTTCAACTTCTTTTTTTGTTTCTTGTTTCTTCCAATACACGGCAGACTTCACTACACTTCTTCGCTTTCACTGTCTCAAATTTCAGTGCCTCCTTCTCCTGCACCCACGGCTGCCGTTATCCCGAGTTACAATGGTAGTTCTGCTCTTGGTACCACTGTTTTCAATGTGAGAACTTTTGGTGCAGTTGGGGATGGTGTTACTGATGATACAAAAGCATTTAAAATGGCTTGGGACAGTGCTTGTCAAACTGAAGATTCGGAAGTTCTTGTTCCAAAAGGGCATTCCTTTATGTTACAGTCTACAATATTCACAGGGCCGTGTAAATCTGGCCTCAAATTGCAGGTTGAATTGTATTCGATTGATGGGACATTAGTGCCGCCAAATGGACCGGATTCATGGCCGAAAAATATTAGTAAGAGACAGTGGTTGGTTTTCTACAGAATCAATGGAATGTCAATGCAAGGAGGTGGTGTAATAGATGGTAGAGGAGAGAAATGGTGGAATCTTCCTTGCAAACCCCACAAAGTACGTAAACCATGCCTTTTGTTATTGGTCCTCATCACCATCTTACCCAATTCAGTAGAAGAAATATCTTCTTCTGGAAGAGGACTTCCTAGAATAACAGAGTCTGTATCCGGAATCAATGGAACAACAATGCCTGGACCTTGTGATAGCCCGGCTGCTGTAAGGTTCTTCATGTGCTCAAATCTGAAACTGCAAGGACTCAAAATCAAGAATAGCCCCCAGTTTCACTGCAAGTTTGATAATTGTCAAAACGTTTTCATAGAATCACTTACCATAAATTCACCTGCTCTAAGTCCCAACACAGACGGAATTCACATACAGAACACAAATAATGTGAAAATATACAATTCACTCGTATCCAATGGTGATGATTGTGTATCAATTGGGACTGGTTCTTATAATATGGAAATTAGGAATATTACTTGCGGTCCAAGTCATGGAATAAGTCTTGGAATTGGCAATTCCCGAGCATGTGTTTCGAATATCACAGTTAGAGACTCGATCATCAAGCACTCTGACAATGGGGTTCGGATCAAAACATGGCAAGGGGGATCAGGATCTGTGTCGAGCATAACATTCCACAACATTCACATGGACACCGTACGAAACCCCATTGTGCTAGACCAATATTACTGCCTCACCAAGCATTGCCCTAACCAAACCTCTGCAGTTCACATATCAAATATCTTGTTCACCAACATAAGGGGTACTTATGATGTGCGAAGCCCGCCTATGCATTTCGCTTGCAGTGACTCAATGCCTTGCACAAACCTCACTCTCTCTGAAGTGGAATTGCTCCCTGCTACAAAAGGACGCTTGGTGTCGAGCCCGCTTTGCTGGAGTGCTTATGGAACTATGCAGACAATTACCGTTCCACCAGTTTTGTGCTTATTAGGGGGCATCCCGGAACTGTTGCCCCAGAATGATAATGATGGGTGTTAA

Protein Analysis

498

Amino Acids

54.15

Weight (kDa)

8.21

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 64 - 112 7e-07 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 94 - 189 5.3e-09 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 234 - 450 1.2e-70 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56710
fragaria_vesca FvH4_6g08130
malus_domestica MD04G1189600.v1.1
prunus_persica Prupe.6G307400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457981
rosa_laevigata RLG00000025181
rosa_multiflora Rmu_sc0000384.1_g000005
rosa_roxburghii Rroxscaffold_6G00421410
rosa_rugosa Rorug03G0024000
rosa_samantha Rh3AG084600 Rh3BG087300 Rh3CG087800 Rh3DG088100
rosa_wichuraiana Rw0G012380 Rw3G007200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
AarI CACCTGC 1 cut(s) 847
Acc36I ACCTGC 2 cut(s) 361, 847
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 992
AccI GTMKAC 1 cut(s) 329
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 4 cut(s) 407, 981, 1283, 1385
AclI AACGTT 1 cut(s) 807
AclWI GGATC 3 cut(s) 1094, 1114, 1120
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 4 cut(s) 27, 108, 832, 864
AcuI CTGAAG 2 cut(s) 300, 1359
AfaI GTAC 4 cut(s) 181, 558, 1158, 1264
AfiI CCNNNNNNNGG 4 cut(s) 68, 413, 992, 1257
AgsI TTSAA 3 cut(s) 34, 193, 377
AjnI CCWGG 1 cut(s) 688
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 3 cut(s) 108, 442, 1044
AlwI GGATC 3 cut(s) 1094, 1114, 1120
AlwNI CAGNNNCTG 2 cut(s) 659, 1115
Ama87I CYCGRG 2 cut(s) 151, 1020
Aor13HI TCCGGA 1 cut(s) 665
AoxI GGCC 3 cut(s) 344, 358, 428
ApeKI GCWGC 2 cut(s) 140, 710
ApoI RAATTY 4 cut(s) 27, 108, 832, 864
Asp718I GGTACC 1 cut(s) 179
AspS9I GGNCC 5 cut(s) 344, 416, 583, 692, 983
AsuC2I CCSGG 2 cut(s) 707, 1460
AsuHPI GGTGA 5 cut(s) 583, 828, 932, 1186, 1240
AsuII TTCGAA 1 cut(s) 1034
AvaI CYCGRG 2 cut(s) 151, 1020
AvaII GGWCC 4 cut(s) 416, 583, 692, 983
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 1385
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 2 cut(s) 127, 697
BccI CCATC 5 cut(s) 215, 386, 503, 602, 1481
BceAI ACGGC 4 cut(s) 85, 128, 153, 331
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 2 cut(s) 673, 922
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 2 cut(s) 707, 1460
BcoDI GTCTC 3 cut(s) 108, 442, 1044
BfaI CTAG 2 cut(s) 645, 1175
BfmI CTRYAG 2 cut(s) 466, 1221
BfuAI ACCTGC 2 cut(s) 361, 847
BfuI GTATCC 2 cut(s) 673, 922
BisI GCNGC 3 cut(s) 141, 407, 711
BlsI GCNGC 3 cut(s) 142, 408, 712
Bme1390I CCNGG 3 cut(s) 690, 707, 1460
Bme18I GGWCC 4 cut(s) 416, 583, 692, 983
BmeT110I CYCGRG 2 cut(s) 151, 1020
BmgT120I GGNCC 5 cut(s) 344, 416, 583, 692, 983
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 3 cut(s) 690, 707, 1460
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 1 cut(s) 1464
BmuI ACTGGG 1 cut(s) 769
BpmI CTGGAG 1 cut(s) 1414
Bpu14I TTCGAA 1 cut(s) 1034
BpuMI CCSGG 2 cut(s) 707, 1460
BsaAI YACGTR 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 1111
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 418, 665
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 413, 992, 1257
Bse1I ACTGG 3 cut(s) 775, 949, 1433
Bse3DI GCAATG 1 cut(s) 1201
Bse8I GATNNNNATC 1 cut(s) 1111
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 226, 1455
BseJI GATNNNNATC 1 cut(s) 1111
BseLI CCNNNNNNNGG 4 cut(s) 68, 413, 992, 1257
BseMI GCAATG 1 cut(s) 1201
BseNI ACTGG 3 cut(s) 775, 949, 1433
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 127, 697
BsgI GTGCAG 2 cut(s) 114, 231
BshFI GGCC 3 cut(s) 346, 360, 430
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 734
BsiHKCI CYCGRG 2 cut(s) 151, 1020
BsiSI CCGG 4 cut(s) 419, 666, 707, 1460
BsiWI CGTACG 1 cut(s) 1156
BslFI GGGAC 4 cut(s) 275, 409, 834, 955
BslI CCNNNNNNNGG 4 cut(s) 68, 413, 992, 1257
BsmAI GTCTC 3 cut(s) 108, 442, 1044
BsmFI GGGAC 4 cut(s) 275, 409, 834, 955
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 346, 360, 430
BsoBI CYCGRG 2 cut(s) 151, 1020
Bsp119I TTCGAA 1 cut(s) 1034
Bsp1286I GDGCHC 2 cut(s) 734, 1385
Bsp13I TCCGGA 1 cut(s) 665
Bsp143I GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
BspACI CCGC 4 cut(s) 407, 981, 1283, 1385
BspANI GGCC 3 cut(s) 346, 360, 430
BspEI TCCGGA 1 cut(s) 665
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 1225
BspMI ACCTGC 2 cut(s) 361, 847
BspPI GGATC 3 cut(s) 1094, 1114, 1120
BspT104I TTCGAA 1 cut(s) 1034
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 1201
BsrI ACTGG 3 cut(s) 775, 949, 1433
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 9 cut(s) 102, 187, 266, 327, 453, 1045, 1156, 1426, 1467
Bst6I CTCTTC 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 1034
BstC8I GCNNGC 3 cut(s) 1283, 1300, 1385
BstDEI CTNAG 1 cut(s) 845
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 226, 1455
BstKTI GATC 5 cut(s) 9, 1059, 1089, 1109, 1115
BstMAI GTCTC 3 cut(s) 108, 442, 1044
BstMBI GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
BstMWI GCNNNNNNNGC 3 cut(s) 137, 1282, 1389
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 3 cut(s) 688, 705, 1458
BstSFI CTRYAG 2 cut(s) 466, 1221
BstSNI TACGTA 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 127, 697
BstX2I RGATCY 1 cut(s) 1112
BstYI RGATCY 1 cut(s) 1112
BsuI GTATCC 2 cut(s) 673, 922
BsuRI GGCC 3 cut(s) 346, 360, 430
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 226, 1455
BtsI GCAGTG 2 cut(s) 781, 1309
BtsIMutI CAGTG 7 cut(s) 98, 120, 183, 271, 458, 781, 1309
BveI ACCTGC 2 cut(s) 361, 847
Cac8I GCNNGC 3 cut(s) 1283, 1300, 1385
CaiI CAGNNNCTG 2 cut(s) 659, 1115
Cfr13I GGNCC 5 cut(s) 344, 416, 583, 692, 983
CseI GACGC 1 cut(s) 1377
Csp6I GTAC 4 cut(s) 180, 557, 1157, 1263
CspCI CAANNNNNGTGG 2 cut(s) 1419, 1454
CviAII CATG 7 cut(s) 426, 567, 727, 992, 1026, 1095, 1147
CviQI GTAC 4 cut(s) 180, 557, 1157, 1263
DdeI CTNAG 1 cut(s) 845
DpnI GATC 5 cut(s) 8, 1058, 1088, 1108, 1114
DpnII GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
Eco105I TACGTA 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 1385
Eco47I GGWCC 4 cut(s) 416, 583, 692, 983
Eco57I CTGAAG 2 cut(s) 300, 1359
Eco88I CYCGRG 2 cut(s) 151, 1020
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 1293
EcoT38I GRGCYC 1 cut(s) 1385
FaeI CATG 7 cut(s) 429, 570, 730, 995, 1029, 1098, 1150
FalI AAGNNNNNCTT 2 cut(s) 1249, 1281
FaqI GGGAC 4 cut(s) 275, 409, 834, 955
FatI CATG 7 cut(s) 425, 566, 726, 991, 1025, 1094, 1146
FauI CCCGC 2 cut(s) 1290, 1392
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 3 cut(s) 141, 407, 711
FokI GGATG 2 cut(s) 233, 1442
FriOI GRGCYC 1 cut(s) 1385
Fsp4HI GCNGC 3 cut(s) 141, 407, 711
FspBI CTAG 2 cut(s) 645, 1175
GluI GCNGC 3 cut(s) 141, 407, 711
GsuI CTGGAG 1 cut(s) 1414
HaeIII GGCC 3 cut(s) 346, 360, 430
HapII CCGG 4 cut(s) 419, 666, 707, 1460
HgaI GACGC 1 cut(s) 1377
Hin1II CATG 7 cut(s) 429, 570, 730, 995, 1029, 1098, 1150
HpaII CCGG 4 cut(s) 419, 666, 707, 1460
HphI GGTGA 5 cut(s) 583, 828, 932, 1186, 1240
Hpy166II GTNNAC 4 cut(s) 330, 563, 1228, 1248
Hpy188I TCNGA 5 cut(s) 289, 741, 1072, 1086, 1339
Hpy188III TCNNGA 6 cut(s) 151, 630, 666, 763, 1020, 1110
Hpy8I GTNNAC 4 cut(s) 330, 563, 1228, 1248
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 9 cut(s) 102, 187, 266, 327, 453, 1045, 1156, 1426, 1467
HpyCH4IV ACGT 2 cut(s) 559, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 1282, 1389
HpyF3I CTNAG 1 cut(s) 845
HpySE526I ACGT 2 cut(s) 559, 807
Hsp92II CATG 7 cut(s) 429, 570, 730, 995, 1029, 1098, 1150
Kpn2I TCCGGA 1 cut(s) 665
KpnI GGTACC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
LmnI GCTCC 1 cut(s) 1356
Lsp1109I GCAGC 2 cut(s) 127, 697
LweI GCATC 1 cut(s) 1464
MaeI CTAG 2 cut(s) 645, 1175
MaeII ACGT 2 cut(s) 559, 807
MaeIII GTNAC 4 cut(s) 155, 226, 321, 1304
MalI GATC 5 cut(s) 8, 1058, 1088, 1108, 1114
MboI GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
MboII GAAGA 9 cut(s) 50, 81, 293, 527, 615, 618, 626, 645, 715
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 734, 1385
MlyI GAGTC 4 cut(s) 665, 747, 1046, 1301
MnlI CCTC 9 cut(s) 129, 371, 488, 509, 596, 629, 1202, 1228, 1337
Mph1103I ATGCAT 1 cut(s) 1293
MroI TCCGGA 1 cut(s) 665
MseI TTAA 2 cut(s) 249, 1495
MslI CAYNNNNRTG 1 cut(s) 1145
MspI CCGG 4 cut(s) 419, 666, 707, 1460
MspR9I CCNGG 3 cut(s) 690, 707, 1460
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 137, 1282, 1389
NciI CCSGG 2 cut(s) 707, 1460
NdeII GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
NlaIII CATG 7 cut(s) 429, 570, 730, 995, 1029, 1098, 1150
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 1304
NsiI ATGCAT 1 cut(s) 1293
NspI RCATGY 1 cut(s) 1029
NspV TTCGAA 1 cut(s) 1034
PaqCI CACCTGC 1 cut(s) 847
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 6 cut(s) 284, 422, 471, 532, 669, 818
Pfl23II CGTACG 1 cut(s) 1156
PflMI CCANNNNNTGG 1 cut(s) 992
PfoI TCCNGGA 1 cut(s) 1458
PkrI GCNGC 3 cut(s) 142, 408, 712
PleI GAGTC 4 cut(s) 664, 747, 1046, 1301
PpsI GAGTC 4 cut(s) 664, 747, 1046, 1301
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 954
Psp1406I AACGTT 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspLI CGTACG 1 cut(s) 1156
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 5 cut(s) 344, 416, 583, 692, 983
PstI CTGCAG 1 cut(s) 1225
PstNI CAGNNNCTG 2 cut(s) 659, 1115
PsuI RGATCY 1 cut(s) 1112
RsaI GTAC 4 cut(s) 181, 558, 1158, 1264
RsaNI GTAC 4 cut(s) 180, 557, 1157, 1263
RseI CAYNNNNRTG 1 cut(s) 1145
SaqAI TTAA 2 cut(s) 249, 1495
SatI GCNGC 3 cut(s) 141, 407, 711
Sau3AI GATC 5 cut(s) 6, 1056, 1086, 1106, 1112
Sau96I GGNCC 5 cut(s) 344, 416, 583, 692, 983
SchI GAGTC 4 cut(s) 665, 747, 1046, 1301
ScrFI CCNGG 3 cut(s) 690, 707, 1460
SduI GDGCHC 2 cut(s) 734, 1385
SetI ASST 9 cut(s) 375, 499, 562, 697, 722, 810, 841, 1220, 1329
SfaNI GCATC 1 cut(s) 1464
SfcI CTRYAG 2 cut(s) 466, 1221
SfuI TTCGAA 1 cut(s) 1034
SinI GGWCC 4 cut(s) 416, 583, 692, 983
SmiMI CAYNNNNRTG 1 cut(s) 1145
SnaBI TACGTA 1 cut(s) 560
SsiI CCGC 4 cut(s) 407, 981, 1283, 1385
SspI AATATT 4 cut(s) 336, 439, 973, 1184
SspMI CTAG 2 cut(s) 645, 1175
StyD4I CCNGG 3 cut(s) 688, 705, 1458
TaaI ACNGT 9 cut(s) 102, 187, 266, 327, 453, 1045, 1156, 1426, 1467
TaiI ACGT 2 cut(s) 562, 810
TaqI TCGA 5 cut(s) 386, 1034, 1055, 1121, 1379
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 6 cut(s) 284, 422, 471, 532, 669, 818
Tru1I TTAA 2 cut(s) 249, 1495
Tru9I TTAA 2 cut(s) 249, 1495
TscAI CASTG 7 cut(s) 105, 120, 190, 271, 458, 788, 1309
TseFI GTSAC 1 cut(s) 1304
TseI GCWGC 2 cut(s) 140, 710
Tsp45I GTSAC 1 cut(s) 1304
TspDTI ATGAA 3 cut(s) 414, 715, 802
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 7 cut(s) 105, 120, 190, 271, 458, 788, 1309
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 4 cut(s) 416, 583, 692, 983
XapI RAATTY 4 cut(s) 27, 108, 832, 864
XceI RCATGY 1 cut(s) 1029
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 2 cut(s) 645, 1175
Zsp2I ATGCAT 1 cut(s) 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.