Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008145

Physical Location & Seq

Genomic Coordinates Reverse (-)

6949294 .. 6952556

Gene Structure 3263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAACTCTTTGCAAGTTCTCGAGCTTCTCGAGAGAGAGTGAGAGATAGATTTACTAATCTTCCAGAGGATGTTGCTTGTAAAATTCTTTCCTTCGTCAGTTTTAGAGACAGTGCTTGTGTGGGATGTGTGTCCAAAAGATGTAGAGAGTTTTCTCTATGCGTTCAGAACTTGGATTTTGATTCCGCCTATGCAATTTACATGCGGGATAGGTTGAGGTTGTTGAATTGTTTGGATAGGTTCTTGTTTCAACGCGGGGAGAAGGAGATAAAGAGCTTTCGTATTCATTGGATCTTTGAAGGAGAAAGTGCAAGAAACGATGAGCATTTTCGAGTAATGTCATGGATCAATTATGCAGTCCAGTGCAATGTTGGAAGTCTTAATCTTGAGCTCAGTATGTTTGGGGGGATGATGACATTAGAATTGCCGTCTTGCATCTTTCATTGCAAGTCTTTGAGGCATCTAATTGTGGATGTATTGAACACAGGAGGGAAGATTCTTAAGACGCCCTCCTTTGCTTGTTCCAGTAATCTCCAATCCTTAAAACTGAAAAATGTTACTATTGAGGAGGGGTTTGGTAAATGGATCTCATGGTGTTGCAAATGCATAAAGGAATTATCACTTGAACAGGTATTCAAGACAGAAAGAATCAGCATTGCAAGCTCATCTCTGGAATCATTTAGTCTTAAGAGTGATTATCGTTTGTGTTCTGATGATCTCCTTAAGCTCTCCATCCTTAACGTCTCAGGTGAAAAACTGGGAAAAATACATGTACAATGGAAAACACGTAGACGTGGCATAGATTATTTGCAGATTTTTGCCCCTAATGTTAAAGATTTGACATTGATTGGGATTTTCATGAATTACCTGTCTTTGGGAAAATTAATGTGTTTAGAAAAGTCGATAATTTATCCATTAGGCATACATCATTTTGACAAGGCGTTTGAGATTCTTTGCAGTGTAAGCAGAGCTAAAGTTGTCGCTTTGATTGGAGACATCATAAAGGTTGTGTTCAGGGAAGGCTTCATGAGACCACCCTTAGATAATGTTTATTGCTTTTCTATACTTGGGACGTTGACTGACGACCTTGTCCCACCTATGGCCAATCTTCTTAAAACAGTGCCTAATTTGATTAGTTTGCGCATAAGTAATGCAGTCATCCCTCTCAACTCTAGTACTAATTCATCTGGGTTCAATATCAGTTATTGGAAATCCCTGAACCTGGCTTTTGTTGATCATCTTGAGTACGTATCAATACCAATTTTCAACGGAGGTAATGAGGTGGAGTTTGCAGCTTATTTGCTTGAAAATGCTAGGAATTTGAAGAGAATGGTCATTTATCACTCAGGCCAACATGGTGCTATAAAGTGGCTTCAAAATAAAAGCTTCTGCTATTCCACTGCCAATGTTATCTTTATGGAACCAGTCAAGCAGTTAATCAAGAAAACAAGGGAAACAGAAAGGAGGTTGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

492

Amino Acids

56.3

Weight (kDa)

9.05

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	114 - 230	8.8e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	412 - 446	4.4e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300
rosa_chinensis	RchiOBHm_Chr3g0458171
rosa_multiflora	Rmu_co8222700.1_g000001 Rmu_sc0012767.1_g000003 Rmu_sc0012767.1_g000004 Rmu_sc0031170.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421240
rosa_rugosa	Rorug03G0025300
rosa_samantha	Rh3AG086100 Rh3BG088800 Rh3CG089400 Rh3DG089800
rosa_wichuraiana	Rw3G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1088
Acc16I	TGCGCA	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	790
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	186, 205, 255
AclWI	GGATC	3 cut(s)	299, 353, 593
AcoI	YGGCCR	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	84, 1318
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	3 cut(s)	774, 1177, 1247
AfiI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
AflII	CTTAAG	3 cut(s)	500, 686, 722
AflIII	ACRYGT	2 cut(s)	769, 785
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	1221
AluBI	AGCT	8 cut(s)	26, 276, 391, 663, 727, 971, 1295, 1386
AluI	AGCT	8 cut(s)	26, 276, 391, 663, 727, 971, 1295, 1386
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	4 cut(s)	102, 748, 987, 1024
AlwI	GGATC	3 cut(s)	299, 353, 593
Ama87I	CYCGRG	2 cut(s)	21, 30
AoxI	GGCC	2 cut(s)	1101, 1348
ApeKI	GCWGC	1 cut(s)	1292
ApoI	RAATTY	2 cut(s)	84, 1318
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AseI	ATTAAT	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	1143
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	2 cut(s)	21, 30
BalI	TGGCCA	1 cut(s)	1103
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	1304
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	1223
BclI	TGATCA	1 cut(s)	1234
BcoDI	GTCTC	4 cut(s)	102, 748, 987, 1024
BfaI	CTAG	3 cut(s)	1173, 1314, 1477
BfrI	CTTAAG	3 cut(s)	500, 686, 722
BisI	GCNGC	1 cut(s)	1293
BlsI	GCNGC	1 cut(s)	1294
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	1 cut(s)	1223
BmeT110I	CYCGRG	2 cut(s)	21, 30
BmgBI	CACGTC	1 cut(s)	794
BmiI	GGNNCC	1 cut(s)	1422
BmrFI	CCNGG	1 cut(s)	1223
BmrI	ACTGGG	1 cut(s)	767
BmsI	GCATC	2 cut(s)	444, 469
BmuI	ACTGGG	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	407, 1262
BsaAI	YACGTR	2 cut(s)	788, 1249
BsaHI	GRCGYC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
Bse1I	ACTGG	4 cut(s)	361, 525, 762, 1424
Bse3DI	GCAATG	3 cut(s)	373, 442, 654
BseBI	CCWGG	1 cut(s)	1223
BseGI	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BseLI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
BseMI	GCAATG	3 cut(s)	373, 442, 654
BseMII	CTCAG	3 cut(s)	406, 759, 1359
BseNI	ACTGG	4 cut(s)	361, 525, 762, 1424
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	1304
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	1103, 1350
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	21, 30
BslFI	GGGAC	2 cut(s)	1076, 1084
BslI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
BsmAI	GTCTC	4 cut(s)	102, 748, 987, 1024
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	1076, 1084
BsnI	GGCC	2 cut(s)	1103, 1350
Bso31I	GGTCTC	1 cut(s)	1024
BsoBI	CYCGRG	2 cut(s)	21, 30
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	5 cut(s)	291, 345, 585, 715, 1234
BspACI	CCGC	3 cut(s)	186, 205, 255
BspANI	GGCC	2 cut(s)	1103, 1350
BspCNI	CTCAG	3 cut(s)	405, 758, 1358
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	2 cut(s)	858, 1026
BspLI	GGNNCC	1 cut(s)	1422
BspPI	GGATC	3 cut(s)	299, 353, 593
BspTI	CTTAAG	3 cut(s)	500, 686, 722
BspTNI	GGTCTC	1 cut(s)	1024
BsrDI	GCAATG	3 cut(s)	373, 442, 654
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	4 cut(s)	361, 525, 762, 1424
BssMI	GATC	5 cut(s)	291, 345, 585, 715, 1234
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	1223
Bst4CI	ACNGT	2 cut(s)	113, 1120
Bst6I	CTCTTC	1 cut(s)	1319
BstACI	GRCGYC	1 cut(s)	506
BstAFI	CTTAAG	3 cut(s)	500, 686, 722
BstAUI	TGTACA	1 cut(s)	772
BstBAI	YACGTR	2 cut(s)	788, 1249
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	4 cut(s)	392, 745, 1039, 1345
BstF5I	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	1143
BstKTI	GATC	5 cut(s)	294, 348, 588, 718, 1237
BstMAI	GTCTC	4 cut(s)	102, 748, 987, 1024
BstMBI	GATC	5 cut(s)	291, 345, 585, 715, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 963
BstNI	CCWGG	1 cut(s)	1223
BstNSI	RCATGY	2 cut(s)	205, 773
BstSCI	CCNGG	1 cut(s)	1221
BstSNI	TACGTA	1 cut(s)	1249
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	1304
BstX2I	RGATCY	2 cut(s)	291, 585
BstYI	RGATCY	2 cut(s)	291, 585
BsuRI	GGCC	2 cut(s)	1103, 1350
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BtsI	GCAGTG	2 cut(s)	964, 1398
BtsIMutI	CAGTG	5 cut(s)	118, 368, 964, 1125, 1398
Cac8I	GCNNGC	1 cut(s)	661
CciI	TCATGA	2 cut(s)	858, 1026
CfoI	GCGC	1 cut(s)	1143
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	3 cut(s)	773, 1176, 1246
CviAII	CATG	7 cut(s)	202, 342, 591, 770, 859, 1027, 1355
CviQI	GTAC	3 cut(s)	773, 1176, 1246
DdeI	CTNAG	4 cut(s)	392, 745, 1039, 1345
DpnI	GATC	5 cut(s)	293, 347, 587, 717, 1236
DpnII	GATC	5 cut(s)	291, 345, 585, 715, 1234
DrdI	GACNNNNNNGTC	1 cut(s)	1088
DseDI	GACNNNNNNGTC	1 cut(s)	1088
EaeI	YGGCCR	1 cut(s)	1101
Eam1104I	CTCTTC	1 cut(s)	1319
EarI	CTCTTC	1 cut(s)	1319
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	391
Eco105I	TACGTA	1 cut(s)	1249
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	1024
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	21, 30
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	1221
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	7 cut(s)	205, 345, 594, 773, 862, 1030, 1358
FaqI	GGGAC	2 cut(s)	1076, 1084
FatI	CATG	7 cut(s)	201, 341, 590, 769, 858, 1026, 1354
FauI	CCCGC	2 cut(s)	198, 248
FbaI	TGATCA	1 cut(s)	1234
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	1 cut(s)	1293
FokI	GGATG	6 cut(s)	83, 138, 421, 485, 719, 1145
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	1293
FspBI	CTAG	3 cut(s)	1173, 1314, 1477
FspI	TGCGCA	1 cut(s)	1142
GlaI	GCGC	1 cut(s)	1142
GluI	GCNGC	1 cut(s)	1293
HaeIII	GGCC	2 cut(s)	1103, 1350
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	1143
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	7 cut(s)	205, 345, 594, 773, 862, 1030, 1358
Hin6I	GCGC	1 cut(s)	1141
HinP1I	GCGC	1 cut(s)	1141
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HindIII	AAGCTT	1 cut(s)	1384
HinfI	GANTC	5 cut(s)	182, 496, 648, 674, 949
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	791, 1077
Hpy188I	TCNGA	2 cut(s)	168, 712
Hpy8I	GTNNAC	2 cut(s)	791, 1077
HpyAV	CCTTC	4 cut(s)	103, 256, 293, 1013
HpyCH4III	ACNGT	2 cut(s)	113, 1120
HpyCH4IV	ACGT	5 cut(s)	741, 787, 793, 1073, 1248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 963
HpyF3I	CTNAG	4 cut(s)	392, 745, 1039, 1345
HpySE526I	ACGT	5 cut(s)	741, 787, 793, 1073, 1248
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	7 cut(s)	205, 345, 594, 773, 862, 1030, 1358
HspAI	GCGC	1 cut(s)	1141
Ksp22I	TGATCA	1 cut(s)	1234
Kzo9I	GATC	5 cut(s)	291, 345, 585, 715, 1234
Lsp1109I	GCAGC	1 cut(s)	1304
LweI	GCATC	2 cut(s)	444, 469
MaeI	CTAG	3 cut(s)	1173, 1314, 1477
MaeII	ACGT	5 cut(s)	741, 787, 793, 1073, 1248
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	5 cut(s)	293, 347, 587, 717, 1236
MboI	GATC	5 cut(s)	291, 345, 585, 715, 1234
MboII	GAAGA	4 cut(s)	53, 505, 1100, 1336
MflI	RGATCY	2 cut(s)	291, 585
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	1103
MluNI	TGGCCA	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	352
Mox20I	TGGCCA	1 cut(s)	1103
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	1103
Msp20I	TGGCCA	1 cut(s)	1103
MspCI	CTTAAG	3 cut(s)	500, 686, 722
MspR9I	CCNGG	1 cut(s)	1223
MvaI	CCWGG	1 cut(s)	1223
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	660, 963
NdeII	GATC	5 cut(s)	291, 345, 585, 715, 1234
NlaIII	CATG	7 cut(s)	205, 345, 594, 773, 862, 1030, 1358
NlaIV	GGNNCC	1 cut(s)	1422
NsbI	TGCGCA	1 cut(s)	1142
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	2 cut(s)	205, 773
PaeR7I	CTCGAG	2 cut(s)	21, 30
PagI	TCATGA	2 cut(s)	858, 1026
PciI	ACATGT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
PflFI	GACNNNGTC	1 cut(s)	1088
PkrI	GCNGC	1 cut(s)	1294
Ppu21I	YACGTR	2 cut(s)	788, 1249
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	1221
PspGI	CCWGG	1 cut(s)	1221
PspN4I	GGNNCC	1 cut(s)	1422
PsuI	RGATCY	2 cut(s)	291, 585
PsyI	GACNNNGTC	1 cut(s)	1088
RsaI	GTAC	3 cut(s)	774, 1177, 1247
RsaNI	GTAC	3 cut(s)	773, 1176, 1246
SacI	GAGCTC	1 cut(s)	393
SatI	GCNGC	1 cut(s)	1293
Sau3AI	GATC	5 cut(s)	291, 345, 585, 715, 1234
ScaI	AGTACT	1 cut(s)	1177
ScrFI	CCNGG	1 cut(s)	1223
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	2 cut(s)	444, 469
Sfr274I	CTCGAG	2 cut(s)	21, 30
SlaI	CTCGAG	2 cut(s)	21, 30
SmlI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SmoI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SnaBI	TACGTA	1 cut(s)	1249
SsiI	CCGC	3 cut(s)	186, 205, 255
SspMI	CTAG	3 cut(s)	1173, 1314, 1477
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	1221
TaaI	ACNGT	2 cut(s)	113, 1120
TaiI	ACGT	5 cut(s)	744, 790, 796, 1076, 1251
TaqI	TCGA	4 cut(s)	22, 31, 331, 902
TatI	WGTACW	2 cut(s)	772, 1175
TfiI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
TscAI	CASTG	5 cut(s)	118, 368, 964, 1125, 1405
TseI	GCWGC	1 cut(s)	1292
TspDTI	ATGAA	6 cut(s)	275, 431, 847, 875, 1015, 1173
TspGWI	ACGGA	1 cut(s)	1284
TspRI	CASTG	5 cut(s)	118, 368, 964, 1125, 1405
Tth111I	GACNNNGTC	1 cut(s)	1088
Vha464I	CTTAAG	3 cut(s)	500, 686, 722
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	2 cut(s)	84, 1318
XceI	RCATGY	2 cut(s)	205, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XhoI	CTCGAG	2 cut(s)	21, 30
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	3 cut(s)	1173, 1314, 1477
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.