Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019389

Physical Location & Seq

Genomic Coordinates Reverse (-)

8423080 .. 8424260

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATTCCTGAAACAGTGGATGATGCTTTGAAGAAGAGGCTTTACACAATTGGGAAAGTGAGCTTAGCATTGGCTTCAAAGTTGCAGGAGGAGAAGGCAGTTCCATTTGAAGAATGCACATCTGATTCAATGTCAGTCTATGACATCGAGCAAGTGGAATTTATTCTCTTGAAGGCGCTCAAGTTTGAAATGAAGTCAATTACTCCATTCCACTACCTGGAACATATGGTCACCATCTTCAGAGATAATTTCAATGAATATCAGATGAGGGAAGAGGAGATAGATATACTACTTTCAAATCTCAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCTTTTATCATAGCTGCTGTAGCAACTATAAAGGTACTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAGTTATTTGAAGATGATATGGAGGTAGTGGAAAAAAATCAGAGAAAGCAGAAACTAAAAACTGAGCTTGCTTCCCTTGTCGAGGCCTATGAAAGTAGAAAAAGAAAGAGAACTGATCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

192

Amino Acids

22.19

Weight (kDa)

5.12

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019389)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460231
rosa_laevigata	RLG00000025034
rosa_roxburghii	Rroxscaffold_6G00419730
rosa_samantha	Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana	Rw3G008350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AclWI	GGATC	2 cut(s)	436, 563
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	217, 535
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	63, 380, 520
AluI	AGCT	3 cut(s)	63, 380, 520
AlwI	GGATC	2 cut(s)	436, 563
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	242, 430
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	1 cut(s)	381
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	13
Bpu1102I	GCTNAGC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 535
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	217, 535
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	104, 290
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	217, 535
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	441, 568
Bsp1720I	GCTNAGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	436, 563
BssMI	GATC	2 cut(s)	441, 568
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	16, 341
Bst6I	CTCTTC	2 cut(s)	29, 267
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	64, 516
BstEII	GGTNACC	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	444, 571
BstMBI	GATC	2 cut(s)	441, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	21, 410
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	401
CviJI	RGCY	6 cut(s)	40, 63, 74, 380, 520, 539
CviKI_1	RGCY	6 cut(s)	40, 63, 74, 380, 520, 539
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	2 cut(s)	64, 516
DpnI	GATC	2 cut(s)	443, 570
DpnII	GATC	2 cut(s)	441, 568
Eam1104I	CTCTTC	2 cut(s)	29, 267
EarI	CTCTTC	2 cut(s)	29, 267
Eco147I	AGGCCT	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	4, 125, 358, 407
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	124, 242, 264, 495
Hpy188III	TCNNGA	3 cut(s)	8, 169, 572
HpyAV	CCTTC	2 cut(s)	88, 166
HpyCH4III	ACNGT	2 cut(s)	16, 341
HpyCH4V	TGCA	2 cut(s)	85, 117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	64, 516
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	441, 568
LpnPI	CCDG	4 cut(s)	21, 71, 203, 230
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	443, 570
MboI	GATC	2 cut(s)	441, 568
MboII	GAAGA	7 cut(s)	43, 46, 122, 229, 284, 451, 476
MfeI	CAATTG	2 cut(s)	48, 320
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	6 cut(s)	48, 158, 198, 247, 312, 320
MnlI	CCTC	7 cut(s)	30, 82, 261, 268, 337, 469, 529
MroXI	GAANNNNTTC	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	48, 320
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	2 cut(s)	441, 568
NmuCI	GTSAC	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	539
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	4 cut(s)	4, 125, 358, 407
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	441, 568
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	7 cut(s)	65, 219, 370, 382, 402, 480, 522
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	6 cut(s)	48, 158, 198, 247, 312, 320
SseBI	AGGCCT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	16, 341
TaqI	TCGA	2 cut(s)	147, 534
TasI	AATT	6 cut(s)	48, 158, 198, 247, 312, 320
TfiI	GAWTC	4 cut(s)	4, 125, 358, 407
TscAI	CASTG	2 cut(s)	21, 417
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	6 cut(s)	206, 270, 324, 350, 467, 558
TspRI	CASTG	2 cut(s)	21, 417
Van91I	CCANNNNNTGG	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.