Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019389

Physical Location & Seq

Genomic Coordinates Reverse (-)

8123394 .. 8124039

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG101900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCAGTCTATGACATCGAGCAAGTGGAATTTACTCTCTTGAAGGCGCTCGAGTTTGAAATGAAGTCAATTACTCCATTCCACTACCTGGAACATATGGTCACCATCTTCAGAGATAATTTCAATGAATATCAGATGAGGGAAGACGAGATAGATATACAACTTTCAAATCTCAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCTTTTATCATAGCTGCTGTAGCAACTATAAAGGTACTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAATTATTTGAAGATGATATGGAGGTAGTGGAAAAAAATCAGAGAAAGCAAAAACTAAAAACTGAGCTTGCTTCCCTTGTCGAGGCCTATGAAAGTAGAAAAAGAAAGAGAACTGATCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

149

Amino Acids

17.45

Weight (kDa)

5.0

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019389)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460231
rosa_laevigata	RLG00000025034
rosa_roxburghii	Rroxscaffold_6G00419730
rosa_samantha	Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana	Rw3G008350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AclWI	GGATC	2 cut(s)	307, 434
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	88, 406
AgsI	TTSAA	6 cut(s)	43, 59, 124, 168, 229, 335
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	251, 391
AluI	AGCT	2 cut(s)	251, 391
AlwI	GGATC	2 cut(s)	307, 434
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	113, 301
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 406
BseBI	CCWGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	88, 406
BseMII	CTCAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	88, 406
BsnI	GGCC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	312, 439
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	307, 434
BssMI	GATC	2 cut(s)	312, 439
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	315, 442
BstMBI	GATC	2 cut(s)	312, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	272
CviJI	RGCY	3 cut(s)	251, 391, 410
CviKI_1	RGCY	3 cut(s)	251, 391, 410
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	2 cut(s)	314, 441
DpnII	GATC	2 cut(s)	312, 439
Eco147I	AGGCCT	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	229, 278
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	113, 135, 366
Hpy188III	TCNNGA	2 cut(s)	40, 443
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	312, 439
LpnPI	CCDG	2 cut(s)	74, 101
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	314, 441
MboI	GATC	2 cut(s)	312, 439
MboII	GAAGA	4 cut(s)	100, 155, 322, 347
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	6 cut(s)	29, 69, 118, 183, 191, 326
MnlI	CCTC	4 cut(s)	132, 208, 340, 400
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	312, 439
NmuCI	GTSAC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	229, 278
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	87
PspXI	VCTCGAGB	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	312, 439
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	6 cut(s)	90, 241, 253, 273, 351, 393
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	6 cut(s)	29, 69, 118, 183, 191, 326
SseBI	AGGCCT	1 cut(s)	410
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	18, 51, 405
TasI	AATT	6 cut(s)	29, 69, 118, 183, 191, 326
TfiI	GAWTC	2 cut(s)	229, 278
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	6 cut(s)	77, 141, 195, 221, 338, 429
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	50
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.