Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019389

Physical Location & Seq

Genomic Coordinates Reverse (-)

8318674 .. 8320890

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAACAAATGGCATCCATGCTTGAAGAGAAATTGACGGATGACAACTGGGATGAATACCTCATTACTTCACTTTCTAGAGATTTAGGGCATGTCCAAATTCTCCCTTCGAATGTATTACCCCGAAGCTTATCCTCACCCCAATGGAGCAGAGATCTGAGGATGCAGATTTTCACATGGTTTGATGAGATGAGGAAGAAGGAAGAGTACCCTATTGGGAGACAAACTGTCTATTTGGCTATGAATTTCTATGACAGATATTGCTCAACAGTATTGATTCCTGAAACAGTGGATGATGCTTTGAAGAAGAGGCTTTACACAACTGGGAAAGTGAGCTTAGCATTGGCTTCAAAGTTGCAGGAGGAGAAGGCAGTTCCATTTGAAGAATGCACATCTGATTCAATGTCAGTCTATGACATCGAGCAAGTGGAATTTACTCTCTTGAAGGCGCTCAAGTTTGAAATGAAGTCAATAACTCCATTCCACTACCTGGAACATATGGTCACCATCTTCAGAGATAATTTCAATGAATATCAGATGAGGGAAGAGGAGATAGATATACAACTTTCAAATCTCAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCTTTTATCATAGCTGCTGTAGCAACTATAAAGGTCCTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAGTTATTTGAAGATGTGAGTCAACTAACCCATGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

255

Amino Acids

29.64

Weight (kDa)

4.89

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	45 - 155	5.5e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019389)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460231
rosa_laevigata	RLG00000025034
rosa_roxburghii	Rroxscaffold_6G00419730
rosa_samantha	Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana	Rw3G008350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	99, 244, 431
AcuI	CTGAAG	1 cut(s)	496
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	490
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	3 cut(s)	129, 336, 653
AluI	AGCT	3 cut(s)	129, 336, 653
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	3 cut(s)	99, 244, 431
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	129, 496
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	4 cut(s)	191, 223, 299, 331
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	515, 703
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	78, 677, 766
BfmI	CTRYAG	1 cut(s)	657
BfoI	RGCGCY	1 cut(s)	452
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	1 cut(s)	654
BlpI	GCTNAGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	673
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	491
BmrI	ACTGGG	2 cut(s)	58, 333
BmsI	GCATC	3 cut(s)	23, 153, 286
BmuI	ACTGGG	2 cut(s)	58, 333
Bpu1102I	GCTNAGC	1 cut(s)	337
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	53, 328
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	5 cut(s)	14, 46, 58, 168, 298
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	53, 328
BseRI	GAGGAG	2 cut(s)	377, 563
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	640
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	154, 714
Bsp1720I	GCTNAGC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	757
BspCNI	CTCAG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	709
BspT104I	TTCGAA	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	53, 328
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	2 cut(s)	154, 714
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	4 cut(s)	229, 271, 289, 614
Bst6I	CTCTTC	4 cut(s)	21, 198, 302, 540
BstBI	TTCGAA	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	158, 337
BstDSI	CCRYGG	1 cut(s)	757
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	5 cut(s)	14, 46, 58, 168, 298
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	157, 717
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	154, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	2 cut(s)	154, 714
BstYI	RGATCY	2 cut(s)	154, 714
BtgI	CCRYGG	1 cut(s)	757
BtsCI	GGATG	5 cut(s)	14, 46, 58, 168, 298
BtsIMutI	CAGTG	2 cut(s)	294, 683
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	19, 92, 177, 758
CviJI	RGCY	6 cut(s)	129, 239, 313, 336, 347, 653
CviKI_1	RGCY	6 cut(s)	129, 239, 313, 336, 347, 653
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	158, 337
DpnI	GATC	2 cut(s)	156, 716
DpnII	GATC	2 cut(s)	154, 714
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	4 cut(s)	21, 198, 302, 540
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	4 cut(s)	21, 198, 302, 540
Eco130I	CCWWGG	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	496
Eco91I	GGTNACC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	673
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	4 cut(s)	22, 95, 180, 761
FatI	CATG	4 cut(s)	18, 91, 176, 757
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	4 cut(s)	53, 65, 175, 305
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	3 cut(s)	78, 677, 766
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	452
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	22, 95, 180, 761
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	749
HindII	GTYRAC	1 cut(s)	749
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	5 cut(s)	277, 398, 631, 680, 745
HphI	GGTGA	2 cut(s)	129, 496
Hpy166II	GTNNAC	1 cut(s)	749
Hpy188I	TCNGA	4 cut(s)	159, 397, 515, 537
Hpy188III	TCNNGA	3 cut(s)	78, 281, 442
Hpy8I	GTNNAC	1 cut(s)	749
HpyAV	CCTTC	4 cut(s)	117, 193, 361, 439
HpyCH4III	ACNGT	4 cut(s)	229, 271, 289, 614
HpyCH4V	TGCA	3 cut(s)	166, 358, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	2 cut(s)	158, 337
Hsp92II	CATG	4 cut(s)	22, 95, 180, 761
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	154, 714
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	6 cut(s)	34, 294, 309, 344, 476, 503
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	3 cut(s)	23, 153, 286
MaeI	CTAG	3 cut(s)	78, 677, 766
MaeIII	GTNAC	2 cut(s)	502, 761
MalI	GATC	2 cut(s)	156, 716
MboI	GATC	2 cut(s)	154, 714
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	2 cut(s)	154, 714
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	7 cut(s)	32, 99, 244, 431, 520, 585, 593
MlyI	GAGTC	1 cut(s)	754
MnlI	CCTC	9 cut(s)	71, 145, 153, 186, 303, 355, 534, 541, 610
MslI	CAYNNNNRTG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	757
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	154, 714
NlaIII	CATG	4 cut(s)	22, 95, 180, 761
NmuCI	GTSAC	2 cut(s)	502, 761
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	110
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	277, 398, 631, 680
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	753
PpsI	GAGTC	1 cut(s)	753
PpuMI	RGGWCCY	1 cut(s)	673
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	673
PspPPI	RGGWCCY	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	154, 714
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	142
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	2 cut(s)	154, 714
Sau96I	GGNCC	1 cut(s)	673
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	623
SetI	ASST	7 cut(s)	63, 131, 338, 492, 643, 655, 675
SfaNI	GCATC	3 cut(s)	23, 153, 286
SfcI	CTRYAG	1 cut(s)	657
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	7 cut(s)	32, 99, 244, 431, 520, 585, 593
SspMI	CTAG	3 cut(s)	78, 677, 766
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	4 cut(s)	229, 271, 289, 614
TaqI	TCGA	2 cut(s)	110, 420
TasI	AATT	7 cut(s)	32, 99, 244, 431, 520, 585, 593
TfiI	GAWTC	4 cut(s)	277, 398, 631, 680
TscAI	CASTG	2 cut(s)	294, 690
TseFI	GTSAC	2 cut(s)	502, 761
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	502, 761
TspDTI	ATGAA	7 cut(s)	69, 257, 479, 543, 597, 623, 740
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	2 cut(s)	294, 690
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	3 cut(s)	99, 244, 431
XbaI	TCTAGA	1 cut(s)	77
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	3 cut(s)	78, 677, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.