Rroxscaffold_6G00419730

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019389
Physical Location & Seq
Forward (+)
41128027 .. 41129324
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419730.1

Sequence Viewer

Length: 663 bp
ATGAGGAAGAAGGAAGAGTACCCTATTGGGAGACAAACTGTCTATTTGGCTATGAATTTCTATGACAGATATTGCTCAACAGTATTGATTCCTGAAACAGTGGATGATGCTTTGAAGAAGAGGCTTTACACAATTGGGAAAGTGAGCTTAGCATTGGCTTCAAAGTTGCAGGAGGAGAAGGCAGTTCCATTTGAAGAATGCACATCTGATTCAATGTCAGTCTATGACATCGAGCAAGTGGAATTTACTCTCTTGAAGGCGCTCAAGTTTGAAATGAAGTCAATTACTCCATTCCACTACCTGGTACATATGGTCACCATCTTCAGAGATAATTTCAATGAATATCAGATGAAGGAAGAGGAGATAGATATACAACTTTCAAATCTCAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCTTTTATCATAGCTGCTGTAGCAACTATAAAGGTACTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAGTTATTTGAAGATGATATGGAGGTAGTGGAAAAAAATCAGAGAAAGCAGAAACTAAAAACTGAGCTTGCTTCCCTTGTCGAGGCCTATGAAAGTAGAAAAAGAAAGAGAACTGATCCAGAGTAG

Protein Analysis

220

Amino Acids

25.57

Weight (kDa)

5.5

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 5 - 92 6.3e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019389)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460231
rosa_laevigata RLG00000025034
rosa_roxburghii Rroxscaffold_6G00419730
rosa_samantha Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana Rw3G008350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AclWI GGATC 2 cut(s) 520, 647
AcsI RAATTY 2 cut(s) 55, 242
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 3 cut(s) 20, 306, 486
AfiI CCNNNNNNNGG 2 cut(s) 301, 619
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 147, 464, 604
AluI AGCT 3 cut(s) 147, 464, 604
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 520, 647
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 55, 242
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 434
BarI GAAGNNNNNNTAC 3 cut(s) 34, 110, 142
BbvI GCAGC 1 cut(s) 451
BccI CCATC 2 cut(s) 326, 514
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 302
BmeRI GACNNNNNGTC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 97
Bpu1102I GCTNAGC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 619
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 301, 619
BseMII CTCAG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 188, 374
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 623
BslI CCNNNNNNNGG 2 cut(s) 301, 619
BsmAI GTCTC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 2 cut(s) 525, 652
Bsp1720I GCTNAGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 1 cut(s) 592
BspPI GGATC 2 cut(s) 520, 647
BssMI GATC 2 cut(s) 525, 652
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 40, 82, 100, 425
Bst6I CTCTTC 3 cut(s) 9, 113, 351
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 2 cut(s) 148, 600
BstEII GGTNACC 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 528, 655
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 525, 652
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 302
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
BsuRI GGCC 1 cut(s) 623
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 105, 494
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 19, 305, 485
CviJI RGCY 7 cut(s) 50, 124, 147, 158, 464, 604, 623
CviKI_1 RGCY 7 cut(s) 50, 124, 147, 158, 464, 604, 623
CviQI GTAC 3 cut(s) 19, 305, 485
DdeI CTNAG 2 cut(s) 148, 600
DpnI GATC 2 cut(s) 527, 654
DpnII GATC 2 cut(s) 525, 652
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 9, 113, 351
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 3 cut(s) 9, 113, 351
Eco147I AGGCCT 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 300
FauNDI CATATG 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 1 cut(s) 623
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 4 cut(s) 88, 209, 442, 491
HphI GGTGA 1 cut(s) 307
Hpy188I TCNGA 4 cut(s) 208, 326, 348, 579
Hpy188III TCNNGA 3 cut(s) 92, 253, 656
HpyAV CCTTC 4 cut(s) 4, 172, 250, 346
HpyCH4III ACNGT 4 cut(s) 40, 82, 100, 425
HpyCH4V TGCA 2 cut(s) 169, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 148, 600
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 2 cut(s) 525, 652
LpnPI CCDG 4 cut(s) 105, 155, 287, 314
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 97
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 527, 654
MboI GATC 2 cut(s) 525, 652
MboII GAAGA 9 cut(s) 19, 26, 127, 130, 206, 313, 368, 535, 560
MfeI CAATTG 2 cut(s) 132, 404
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 7 cut(s) 55, 132, 242, 282, 331, 396, 404
MnlI CCTC 6 cut(s) 114, 166, 352, 421, 553, 613
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 2 cut(s) 132, 404
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeI CATATG 1 cut(s) 309
NdeII GATC 2 cut(s) 525, 652
NmuCI GTSAC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 623
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 4 cut(s) 88, 209, 442, 491
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 3 cut(s) 20, 306, 486
RsaNI GTAC 3 cut(s) 19, 305, 485
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 2 cut(s) 525, 652
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 434
SetI ASST 7 cut(s) 149, 303, 454, 466, 486, 564, 606
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 7 cut(s) 55, 132, 242, 282, 331, 396, 404
SseBI AGGCCT 1 cut(s) 623
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 4 cut(s) 40, 82, 100, 425
TaqI TCGA 2 cut(s) 231, 618
TasI AATT 7 cut(s) 55, 132, 242, 282, 331, 396, 404
TfiI GAWTC 4 cut(s) 88, 209, 442, 491
TscAI CASTG 2 cut(s) 105, 501
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 8 cut(s) 68, 290, 354, 365, 408, 434, 551, 642
TspRI CASTG 2 cut(s) 105, 501
Van91I CCANNNNNTGG 1 cut(s) 301
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 2 cut(s) 55, 242
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.