RLG00000025034

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019389
Physical Location & Seq
Forward (+)
41464686 .. 41466390
1705 bp
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UTR
Exon/CDS
Intron
RLM00000025034

Sequence Viewer

Length: 834 bp
ATGGCATCCATGCTTGAAGAGAAATTGACGGATGACAACTGGGATGAATACCTCATTGCTTCACTTTCTAGAGATTTAGGGCACGTCCAAATCCTCCCTTCAAATATATTACCCCGAAGCTTATCCTCACTCCAATGGAGCAGAGATCTGAGGATGCAGATTTTCACATGGTTTGATGAGATGAGGAAGAAGGAAGAGTACCCTATTGGGAGACAAACTGTCTATTTTGCTATGAATTTCTATGACAGATATTGCTCGATCAACAGTATTGTGGATGATGCTTTGAAGAAGAGACTTTACACAATTGGGAAAGTGAGCATATCATTGGCTTCAAAGTTGCAGGAGGAGAAGGCAGTTCCATTCGAAGAATGCACATCTGATTCAATGTCAGTCTATGACATCGAGCAAGTGGAATTTACTCTCTTGAAGGCGCTCAAGTTTGAAATGAAGTCGATTACTCCATTCCACTACCTGGAACATATGGTCACCATCTTTAGAGATAATTTCAATGAATATCAGATGAAGGAAGACGAGATAGATATACAACTTTCAAATCTCAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCCTTTATCATAGCTGCTGTAGCAACTATAAAGGTTCTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAGTTATTTGAAGATGATATGGAGGTAGAGGAGAAAAATCAGAGAACGCAGAAACTAAAAACTGAGATTGCTTCCCTTGTTGAGGCCTTTGAATGTAGAAAAAGAAAGAGAACTGATCCAGAGTAG

Protein Analysis

278

Amino Acids

32.4

Weight (kDa)

5.01

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 47 - 149 1.3e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019389)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460231
rosa_laevigata RLG00000025034
rosa_roxburghii Rroxscaffold_6G00419730
rosa_samantha Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana Rw3G008350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 472
AclWI GGATC 2 cut(s) 691, 818
AcsI RAATTY 2 cut(s) 235, 413
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 472, 790
AhdI GACNNNNNGTC 1 cut(s) 218
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 2 cut(s) 120, 635
AluI AGCT 2 cut(s) 120, 635
Alw26I GTCTC 2 cut(s) 205, 286
AlwI GGATC 2 cut(s) 691, 818
AoxI GGCC 1 cut(s) 792
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 235, 413
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 1 cut(s) 478
AsuII TTCGAA 1 cut(s) 363
BaeGI GKGCMC 2 cut(s) 84, 605
BarI GAAGNNNNNNTAC 4 cut(s) 182, 214, 281, 313
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 622
BccI CCATC 2 cut(s) 497, 685
BciT130I CCWGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 205, 286
BfaI CTAG 2 cut(s) 69, 659
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 1 cut(s) 434
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 473
BmeRI GACNNNNNGTC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 473
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 14, 144, 268
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 790
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 473
BseGI GGATG 5 cut(s) 5, 37, 49, 159, 280
BseLI CCNNNNNNNGG 2 cut(s) 472, 790
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 140, 762
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 359, 752
BseSI GKGCMC 2 cut(s) 84, 605
BseXI GCAGC 1 cut(s) 622
BshFI GGCC 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 472, 790
BsmAI GTCTC 2 cut(s) 205, 286
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 1 cut(s) 794
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 84, 605
Bsp143I GATC 4 cut(s) 145, 258, 696, 823
BspANI GGCC 1 cut(s) 794
BspCNI CTCAG 2 cut(s) 141, 763
BspPI GGATC 2 cut(s) 691, 818
BspT104I TTCGAA 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 44
BssMI GATC 4 cut(s) 145, 258, 696, 823
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 3 cut(s) 220, 266, 596
Bst6I CTCTTC 3 cut(s) 12, 189, 284
BstBI TTCGAA 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 149, 771
BstEII GGTNACC 1 cut(s) 484
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 5 cut(s) 5, 37, 49, 159, 280
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 4 cut(s) 148, 261, 699, 826
BstMAI GTCTC 2 cut(s) 205, 286
BstMBI GATC 4 cut(s) 145, 258, 696, 823
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 2 cut(s) 84, 605
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 145, 696
BstYI RGATCY 2 cut(s) 145, 696
BsuRI GGCC 1 cut(s) 794
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 5 cut(s) 5, 37, 49, 159, 280
BtsIMutI CAGTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 10, 168
CviJI RGCY 4 cut(s) 120, 329, 635, 794
CviKI_1 RGCY 4 cut(s) 120, 329, 635, 794
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 149, 771
DpnI GATC 4 cut(s) 147, 260, 698, 825
DpnII GATC 4 cut(s) 145, 258, 696, 823
DriI GACNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 12, 189, 284
Eam1105I GACNNNNNGTC 1 cut(s) 218
EarI CTCTTC 3 cut(s) 12, 189, 284
Eco147I AGGCCT 1 cut(s) 794
Eco91I GGTNACC 1 cut(s) 484
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO65I GGTNACC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 471
FaeI CATG 2 cut(s) 13, 171
FatI CATG 2 cut(s) 9, 167
FauNDI CATATG 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 4 cut(s) 44, 56, 166, 287
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 2 cut(s) 69, 659
GlaI GCGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 1 cut(s) 794
HhaI GCGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 13, 171
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 380, 613, 662
HphI GGTGA 1 cut(s) 478
Hpy188I TCNGA 4 cut(s) 150, 379, 519, 750
Hpy188III TCNNGA 4 cut(s) 69, 424, 659, 827
HpyAV CCTTC 5 cut(s) 108, 184, 343, 421, 517
HpyCH4III ACNGT 3 cut(s) 220, 266, 596
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 157, 340, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 2 cut(s) 149, 771
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 13, 171
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 145, 258, 696, 823
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 25, 326, 458, 485
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 3 cut(s) 14, 144, 268
MaeI CTAG 2 cut(s) 69, 659
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 484
MalI GATC 4 cut(s) 147, 260, 698, 825
MboI GATC 4 cut(s) 145, 258, 696, 823
MboII GAAGA 9 cut(s) 29, 199, 206, 298, 301, 377, 539, 706, 731
MfeI CAATTG 2 cut(s) 303, 575
MflI RGATCY 2 cut(s) 145, 696
MhlI GDGCHC 2 cut(s) 84, 605
MluCI AATT 7 cut(s) 23, 235, 303, 413, 502, 567, 575
MslI CAYNNNNRTG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 473
MunI CAATTG 2 cut(s) 303, 575
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 641
NdeI CATATG 1 cut(s) 480
NdeII GATC 4 cut(s) 145, 258, 696, 823
NlaIII CATG 2 cut(s) 13, 171
NmuCI GTSAC 1 cut(s) 484
NspV TTCGAA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 794
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 380, 613, 662
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 1 cut(s) 637
Psp6I CCWGG 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 1 cut(s) 471
PsuI RGATCY 2 cut(s) 145, 696
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 133
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 4 cut(s) 145, 258, 696, 823
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 2 cut(s) 84, 605
SetI ASST 7 cut(s) 54, 87, 122, 474, 637, 657, 735
SfaNI GCATC 3 cut(s) 14, 144, 268
SfcI CTRYAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 7 cut(s) 23, 235, 303, 413, 502, 567, 575
SseBI AGGCCT 1 cut(s) 794
SspMI CTAG 2 cut(s) 69, 659
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 220, 266, 596
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 257, 363, 402, 452
TasI AATT 7 cut(s) 23, 235, 303, 413, 502, 567, 575
TfiI GAWTC 3 cut(s) 380, 613, 662
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 8 cut(s) 60, 248, 461, 525, 536, 579, 605, 722
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 672
Van91I CCANNNNNTGG 1 cut(s) 472
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 2 cut(s) 235, 413
XbaI TCTAGA 2 cut(s) 68, 658
XspI CTAG 2 cut(s) 69, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.