Rw3G008350

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0019389
Physical Location & Seq
Reverse (-)
7724986 .. 7726643
1658 bp
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UTR
Exon/CDS
Intron
Rw3G008350.1

Sequence Viewer

Length: 843 bp
ATGGCATCCCTGCTTGAAGAGAAATTGACGGATGACAACTGGGATGAATACCTCATTACTTCACTTTCTAGAGATTTAGGGCATGTCCAAATTCTCCCTTCGAATGCATTACCCCGAAGCTTATCCTCACCCCAATGGAGCAGAGATCTGAGGATGCAGATTTTCACATGGTTTGATGAGATGAGGAAGAAGGAAGAGTACCCTATTGGGAGACAAACTGTCTATTTGGCTATGAATTTCTATGACAGATATTGCTCAACAGTATTGATTCCTGAAACAGTGGATGATGCTTTGAAGAAGAGGCTTTACACAATTGGGAAAGTGAGCTTAGCATTGGCTTCAAAGTTGCAGGAGGAGAAGGCAGTTCCATTTGAAGAATGCACATCTGATTCAATGTCAGTCTATGACATCGAGCAAGTGGAATTTACTCTCTTGAAGGCGCTCAAGTTTGAAATGAAGTCAATTACTCCATTCCACTACCTGGAACATATGGTCACCATCTTCAGAGATAATTTCAATGAATATCAGATGAGGGAAGAGAAGATAGATATACAACTTTCAAATCTTAAAGATGAAATTGGACAATTGGTGCTTGATATGAACTGTGAGGGCACTTTGTTGAATCGCAGACCTTTTATCATAGCTGCTGTAGCAACTATAAAGGTACTAGAATCACTGATTTCTCCATCTATATCAGCACCGAAGATCCTATCTATGAAGTTATTTGAAGATGATATGGAGGTAGTGGAAAAAAATCAGAGAAAGCAGAAACTAAAAACTGAGCTTGCTTCCCTTGTCGAGGCCCATGAAAGTAGAAAAAGAAAGAGAACTGATCCAGAGTAG

Protein Analysis

280

Amino Acids

32.65

Weight (kDa)

5.29

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 42 - 152 1.6e-12 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019389)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460231
rosa_laevigata RLG00000025034
rosa_roxburghii Rroxscaffold_6G00419730
rosa_samantha Rh3BG101900 Rh3BG102000 Rh3CG104000 Rh3DG103200
rosa_wichuraiana Rw3G008350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AclWI GGATC 2 cut(s) 700, 827
AcsI RAATTY 3 cut(s) 90, 235, 422
AcuI CTGAAG 1 cut(s) 487
AfaI GTAC 2 cut(s) 200, 666
AfiI CCNNNNNNNGG 2 cut(s) 481, 799
AhdI GACNNNNNGTC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 4 cut(s) 120, 327, 644, 784
AluI AGCT 4 cut(s) 120, 327, 644, 784
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 2 cut(s) 700, 827
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 3 cut(s) 90, 235, 422
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 802
AsuHPI GGTGA 2 cut(s) 120, 487
AsuII TTCGAA 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 614
BarI GAAGNNNNNNTAC 4 cut(s) 182, 214, 290, 322
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 506, 694
BciT130I CCWGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 69, 668
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 443
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 645
BlpI GCTNAGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 482
BmeRI GACNNNNNGTC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 802
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 14, 144, 277
BmuI ACTGGG 1 cut(s) 49
Bpu1102I GCTNAGC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 799
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 482
BseGI GGATG 5 cut(s) 5, 37, 49, 159, 289
BseLI CCNNNNNNNGG 2 cut(s) 481, 799
BseMII CTCAG 2 cut(s) 140, 771
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 1 cut(s) 631
BshFI GGCC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 481, 799
BsmAI GTCTC 1 cut(s) 205
BsmI GAATGC 2 cut(s) 109, 383
BsnI GGCC 1 cut(s) 803
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 3 cut(s) 145, 705, 832
Bsp1720I GCTNAGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 2 cut(s) 141, 772
BspPI GGATC 2 cut(s) 700, 827
BspT104I TTCGAA 1 cut(s) 101
BsrI ACTGG 1 cut(s) 44
BssMI GATC 3 cut(s) 145, 705, 832
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 4 cut(s) 220, 262, 280, 605
Bst6I CTCTTC 4 cut(s) 12, 189, 293, 531
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 3 cut(s) 149, 328, 780
BstEII GGTNACC 1 cut(s) 493
BstENI CCTNNNNNAGG 1 cut(s) 797
BstF5I GGATG 5 cut(s) 5, 37, 49, 159, 289
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 3 cut(s) 148, 708, 835
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 3 cut(s) 145, 705, 832
BstMWI GCNNNNNNNGC 1 cut(s) 650
BstNI CCWGG 1 cut(s) 482
BstNSI RCATGY 1 cut(s) 86
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 2 cut(s) 145, 705
BstYI RGATCY 2 cut(s) 145, 705
BsuRI GGCC 1 cut(s) 803
BtsCI GGATG 5 cut(s) 5, 37, 49, 159, 289
BtsIMutI CAGTG 2 cut(s) 285, 674
Cac8I GCNNGC 1 cut(s) 786
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 802
Csp6I GTAC 2 cut(s) 199, 665
CviAII CATG 3 cut(s) 83, 168, 806
CviJI RGCY 8 cut(s) 120, 230, 304, 327, 338, 644, 784, 803
CviKI_1 RGCY 8 cut(s) 120, 230, 304, 327, 338, 644, 784, 803
CviQI GTAC 2 cut(s) 199, 665
DdeI CTNAG 3 cut(s) 149, 328, 780
DpnI GATC 3 cut(s) 147, 707, 834
DpnII GATC 3 cut(s) 145, 705, 832
DriI GACNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 4 cut(s) 12, 189, 293, 531
Eam1105I GACNNNNNGTC 1 cut(s) 218
EarI CTCTTC 4 cut(s) 12, 189, 293, 531
Eco57I CTGAAG 1 cut(s) 487
Eco91I GGTNACC 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 797
EcoO65I GGTNACC 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 3 cut(s) 86, 171, 809
FatI CATG 3 cut(s) 82, 167, 805
FauNDI CATATG 1 cut(s) 489
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 4 cut(s) 44, 56, 166, 296
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 2 cut(s) 69, 668
GlaI GCGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 1 cut(s) 803
HhaI GCGC 1 cut(s) 442
Hin1II CATG 3 cut(s) 86, 171, 809
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 4 cut(s) 268, 389, 622, 671
HphI GGTGA 2 cut(s) 120, 487
Hpy188I TCNGA 5 cut(s) 150, 388, 506, 528, 759
Hpy188III TCNNGA 4 cut(s) 69, 272, 433, 836
HpyAV CCTTC 4 cut(s) 108, 184, 352, 430
HpyCH4III ACNGT 4 cut(s) 220, 262, 280, 605
HpyCH4V TGCA 4 cut(s) 107, 157, 349, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 650
HpyF3I CTNAG 3 cut(s) 149, 328, 780
Hsp92II CATG 3 cut(s) 86, 171, 809
HspAI GCGC 1 cut(s) 440
Kzo9I GATC 3 cut(s) 145, 705, 832
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 6 cut(s) 23, 25, 285, 335, 467, 494
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 3 cut(s) 14, 144, 277
MaeI CTAG 2 cut(s) 69, 668
MaeIII GTNAC 1 cut(s) 493
MalI GATC 3 cut(s) 147, 707, 834
MboI GATC 3 cut(s) 145, 705, 832
MfeI CAATTG 2 cut(s) 312, 584
MflI RGATCY 2 cut(s) 145, 705
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 9 cut(s) 23, 90, 235, 312, 422, 462, 511, 576, 584
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 2 cut(s) 312, 584
Mva1269I GAATGC 2 cut(s) 109, 383
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 1 cut(s) 650
NdeI CATATG 1 cut(s) 489
NdeII GATC 3 cut(s) 145, 705, 832
NlaIII CATG 3 cut(s) 86, 171, 809
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 101
PctI GAATGC 2 cut(s) 109, 383
PfeI GAWTC 4 cut(s) 268, 389, 622, 671
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 480
PspEI GGTNACC 1 cut(s) 493
PspGI CCWGG 1 cut(s) 480
PspPI GGNCC 1 cut(s) 802
PsuI RGATCY 2 cut(s) 145, 705
RsaI GTAC 2 cut(s) 200, 666
RsaNI GTAC 2 cut(s) 199, 665
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 3 cut(s) 145, 705, 832
Sau96I GGNCC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 614
SetI ASST 9 cut(s) 54, 122, 329, 483, 634, 646, 666, 744, 786
SfaNI GCATC 3 cut(s) 14, 144, 277
SfcI CTRYAG 1 cut(s) 648
SfuI TTCGAA 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 9 cut(s) 23, 90, 235, 312, 422, 462, 511, 576, 584
SspMI CTAG 2 cut(s) 69, 668
StyD4I CCNGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 220, 262, 280, 605
TaqI TCGA 3 cut(s) 101, 411, 798
TasI AATT 9 cut(s) 23, 90, 235, 312, 422, 462, 511, 576, 584
TfiI GAWTC 4 cut(s) 268, 389, 622, 671
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 285, 681
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 8 cut(s) 60, 248, 470, 534, 588, 614, 731, 822
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 285, 681
Van91I CCANNNNNTGG 1 cut(s) 481
XagI CCTNNNNNAGG 1 cut(s) 797
XapI RAATTY 3 cut(s) 90, 235, 422
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 1 cut(s) 86
XspI CTAG 2 cut(s) 69, 668
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.